| | Lily mitosis 08 | Active | Photograph | | A light microscope image of a cell from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, condensed chromosomes are clearly visible and lined up. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1010">1010</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1011">1011</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1012">1012</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1013">1013</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1014">1014</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1015">1015</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1016">1016</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1017">1017</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1018">1018</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1019">1019</a>. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 48,934 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA | | 131 | 11,418 | 192 | | 262 | 32,273 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Lily mitosis 01 | Active | Photograph | | A light microscope image shows the chromosomes, stained dark blue, in a dividing cell of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. | | Andrew S. Bajer, University of Oregon, Eugene | 860 | 4,900,308 | 1,261 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1)] File name: F04101GMS blue cell source.tif | Andrew S. Bajer (not an NIGMS grantee) | DNA, nucleus, flower, circle | | 215 | 590,248 | 316 | | 430 | 66,936 | 631 | Cells, Genes | | 5/6/2005 | CCC | Andrew S. Bajer, University of Oregon, Eugene | | | Sea urchin embryo 04 | Active | Photograph | | | | George von Dassow, University of Washington | 300 | 73,117 | 800 | [OCPL Contact: Karin Jegalian] Received from George von Dassow of Odell lab, when searching for cool image for Biomedical Beat.None of the images in this series were used. Instead, used myo2. 12/20/07 to KJ: Of course you are welcome to use them; the NIGMS paid for their creation after all! Please let me know if you need anything else. (2/11/05 note-description of how to view stereo triplets) | Garrett Odell, CBCB | cell, division, development | | 75 | 7,685 | 200 | | 150 | 20,924 | 400 | Cells | | 3/18/2005 | Not used | George von Dassow, University of Washington | | | Lily mitosis 07 | Active | Photograph | | A light microscope image of a cell from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, condensed chromosomes are clearly visible and have lined up in the middle of the dividing cell. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1010">1010</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1011">1011</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1012">1012</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1013">1013</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1014">1014</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1015">1015</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1016">1016</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1018">1018</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1019">1019</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1021">1021</a>. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 45,475 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA | | 131 | 10,061 | 192 | | 262 | 30,277 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Lab mice | Active | Photograph | | Many researchers use the mouse <i>(Mus musculus)</i> as a model organism to study mammalian biology. Mice carry out practically all the same life processes as humans and, because of their small size and short generation times, are easily raised in labs. Scientists studying a certain cellular activity or disease can choose from tens of thousands of specially bred strains of mice to select those prone to developing certain tumors, neurological diseases, metabolic disorders, premature aging, or other conditions. | | Bill Branson, National Institutes of Health, Bethesda, MD | 709 | 2,912,308 | 828 | | N/A | research organism | | 178 | 564,174 | 207 | | 355 | 15,011 | 414 | Tools and Techniques | | 5/6/2005 | CCC | Bill Branson, National Institutes of Health | | | Lily mitosis 09 | Active | Photograph | | A light microscope image of a cell from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, condensed chromosomes are clearly visible and are starting to separate to form two new cells. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 56,337 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA | | 131 | 12,339 | 192 | | 262 | 36,021 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Lily mitosis 05 | Active | Photograph | | A light microscope image of a cell from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, condensed chromosomes are clearly visible. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1010">1010</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1011">1011</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1012">1012</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1013">1013</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1014">1014</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1016">1016</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1017">1017</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1018">1018</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1019">1019</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1021">1021</a>. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 56,859 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA, nucleus | | 131 | 12,406 | 192 | | 262 | 35,937 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Lily mitosis 13 | Active | Photograph | | A light microscope image of cells from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, two cells have formed after a round of mitosis. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1010">1010</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1011">1011</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1012">1012</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1013">1013</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1014">1014</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1015">1015</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1016">1016</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1017">1017</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1018">1018</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1021">1021</a>. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 54,512 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA | | 131 | 12,290 | 192 | | 262 | 35,589 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Microarray 01 | Active | Photograph | | Microarrays, also called gene chips, are tools that let scientists track the activity of hundreds or thousands of genes simultaneously. For example, researchers can compare the activities of genes in healthy and diseased cells, allowing the scientists to pinpoint which genes and cell processes might be involved in the development of a disease. | | Juanita Martinez, Angelina Rodriguez of the Werner-Washburne lab | 1,082 | 6,177,124 | 1,296 | (Bulk import) [OCPL Contact: Alisa Machalek] | Maggie Werner-Washburne, GDB | genetics, DNA, RNA | | 270 | 634,161 | 324 | | 541 | 215,017 | 648 | Tools and Techniques | | 5/6/2005 | CCC | Maggie Werner-Washburne, University of New Mexico, Albuquerque | | | Sea urchin embryo 05 | Active | Photograph | | | | George von Dassow, University of Washington | 300 | 84,429 | 800 | [OCPL Contact: Karin Jegalian] Received from George von Dassow of Odell lab, when searching for cool image for Biomedical Beat.None of the images in this series were used. Instead, used myo2. 12/20/07 to KJ: Of course you are welcome to use them; the NIGMS paid for their creation after all! Please let me know if you need anything else. (2/11/05 note-description of how to view stereo triplets) | Garrett Odell, CBCB | cell, division, development | | 75 | 7,982 | 200 | | 150 | 22,788 | 400 | Cells | | 3/18/2005 | Not used | George von Dassow, University of Washington | | | Sea urchin embryo 02 | Active | Photograph | | | | George von Dassow, University of Washington | 300 | 82,975 | 800 | [OCPL Contact: Karin Jegalian] Received from George von Dassow of Odell lab, when searching for cool image for Biomedical Beat.None of the images in this series were used. Instead, used myo2. 12/20/07 to KJ: Of course you are welcome to use them; the NIGMS paid for their creation after all! Please let me know if you need anything else. (2/11/05 note-description of how to view stereo triplets) | Garrett Odell, CBCB | Cell, division, mitosis, development | | 75 | 8,089 | 200 | | 150 | 23,014 | 400 | Cells | | 3/18/2005 | Not used | George von Dassow, University of Washington | | | Sea urchin embryo 03 | Active | Photograph | | | | George von Dassow, University of Washington | 300 | 83,646 | 800 | [OCPL Contact: Karin Jegalian] Received from George von Dassow of Odell lab, when searching for cool image for Biomedical Beat.None of the images in this series were used. Instead, used myo2. 12/20/07 to KJ: Of course you are welcome to use them; the NIGMS paid for their creation after all! Please let me know if you need anything else. (2/11/05 note-description of how to view stereo triplets) | Garrett Odell, CBCB | cell, division, development | | 75 | 7,997 | 200 | | 150 | 22,756 | 400 | Cells | | 3/18/2005 | Not used | George von Dassow, University of Washington | | | Skin cross-section | Active | Illustration | | Cross-section of skin anatomy shows layers and different tissue types. | | National Institute of General Medical Sciences | 1,932 | 731,442 | 3,219 | (Bulk import) [OCPL Contact: Alison Davis] [Similar images: 300skin8inch] | N/A | epidermis, dermis, hair follicle, sweat gland, fibroblasts, blood vessel | | 483 | 39,503 | 804 | | 966 | 180,551 | 1,609 | Cells | | 5/6/2005 | 6/18/99 fact sheet | National Institutes of Health Medical Arts | | | Lily mitosis 06 | Active | Photograph | | A light microscope image of a cell from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, condensed chromosomes are clearly visible and are starting to line up. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1010">1010</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1011">1011</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1012">1012</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1013">1013</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1014">1014</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1015">1015</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1017">1017</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1018">1018</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1019">1019</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1021">1021</a>. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 57,482 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA | | 131 | 12,913 | 192 | | 262 | 36,433 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Lily mitosis 02 | Active | Photograph | | | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 58,205 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA, nucleus | | 131 | 12,503 | 192 | | 262 | 38,545 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Sea urchin embryo 01 | Active | Photograph | | | | George von Dassow, University of Washington | 300 | 91,185 | 800 | [OCPL Contact: Karin Jegalian] Received from George von Dassow of Odell lab, when searching for cool image for Biomedical Beat.None of the images in this series were used. Instead, used myo2. 12/20/07 to KJ: Of course you are welcome to use them; the NIGMS paid for their creation after all! Please let me know if you need anything else. (2/11/05 note-description of how to view stereo triplets) | Garrett Odell, CBCB | cell, division, mitosis | | 75 | 9,621 | 200 | | 150 | 27,076 | 400 | Cells | | 3/18/2005 | Not used | George von Dassow, University of Washington | | | Lily mitosis 12 | Active | Photograph | | A light microscope image of a cell from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, condensed chromosomes are clearly visible near the end of a round of mitosis. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1010">1010</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1011">1011</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1012">1012</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1013">1013</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1014">1014</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1015">1015</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1016">1016</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1017">1017</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1019">1019</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1021">1021</a>. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 52,632 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA | | 131 | 10,926 | 192 | | 262 | 34,377 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Lily mitosis 03 | Active | Photograph | | | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 43,287 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | Nucleus | | 131 | 9,601 | 192 | | 262 | 28,783 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Lily mitosis 11 | Active | Photograph | | A light microscope image of cells from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, condensed chromosomes are clearly visible and have separated into the opposite sides of a dividing cell. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1010">1010</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1012">1012</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1013">1013</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1014">1014</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1015">1015</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1016">1016</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1017">1017</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1018">1018</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1019">1019</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1021">1021</a>. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 53,165 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA, heredity | | 131 | 11,593 | 192 | | 262 | 34,912 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Lily mitosis 04 | Active | Photograph | | | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 56,905 | 768 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | DNA, nucleus | | 131 | 12,608 | 192 | | 262 | 37,576 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Sea urchin embryo 06 | Active | Photograph | | | | George von Dassow, University of Washington | 300 | 109,057 | 800 | [OCPL Contact: Karin Jegalian] Received from George von Dassow of Odell lab, when searching for cool image for Biomedical Beat.None of the images in this series were used. Instead, used myo2. 12/20/07 to KJ: Of course you are welcome to use them; the NIGMS paid for their creation after all! Please let me know if you need anything else. (2/11/05 note-description of how to view stereo triplets) | Garrett Odell, CBCB | cell, division, development | | 75 | 10,275 | 200 | | 150 | 29,443 | 400 | Cells | | 3/18/2005 | Not used | George von Dassow, University of Washington | | | Lily mitosis 10 | Active | Photograph | | A light microscope image of a cell from the endosperm of an African globe lily (<i>Scadoxus katherinae</i>). This is one frame of a time-lapse sequence that shows cell division in action. The lily is considered a good organism for studying cell division because its chromosomes are much thicker and easier to see than human ones. Staining shows microtubules in red and chromosomes in blue. Here, condensed chromosomes are clearly visible and are separating to form the cores of two new cells. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1011">1011</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1012">1012</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1013">1013</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1014">1014</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1015">1015</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1016">1016</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1017">1017</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1018">1018</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1019">1019</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1021">1021</a>. | | Andrew S. Bajer, University of Oregon, Eugene | 524 | 67,455 | 768 | [OCPL Contact: Alisa Machalek] [Similar images: lilymit1-13(1), series of 14] | Andrew S. Bajer (not an NIGMS grantee) | nucleus | | 131 | 14,473 | 192 | | 262 | 43,535 | 384 | Cells, Genes | | 4/22/2005 | Not used | Andrew S. Bajer, University of Oregon, Eugene | | | Protein crystals | Active | Photograph | | Structural biologists create crystals of proteins, shown here, as a first step in a process called X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 1,341 | 286,444 | 910 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: N/A] F04101GMS 0226d2.tif | Alex McPherson, CBB | microscopy | | 335 | 604,959 | 228 | | 670 | 85,863 | 455 | Molecular Structures, Tools and Techniques | | 5/6/2005 | CCC | Alex McPherson, University of California, Irvine | | | Natcher Building 05 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 1,536 | 1,909,629 | 2,048 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1-3, 5-7, 2005-04-14-008, 2005-04-14-009, 2005-04-14-010] | N/A | offices | | 459 | 134,797 | 612 | | 768 | 300,420 | 1,024 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Nerve and glial cells in fruit fly embryo | Active | Photograph | | Glial cells (stained green) in a fruit fly developing embryo have survived thanks to a signaling pathway initiated by neighboring nerve cells (stained red). | | Andreas Bergmann and Hermann Steller, Rockefeller University | 741 | 488,957 | 1,500 | [OCPL Contact: Kirstie Saltsman] A. Bergmann is former postdoc of Steller lab. Steller granted permission to use in other NIH print and online publications. | Hermann Steller, GDB | microscopy, neuron | | 184 | 54,631 | 375 | | 370 | 102,394 | 750 | Cells | | 5/27/2005 | ITC | Hermann Steller, Rockefeller University | | | Natcher Building 01 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 2,048 | 2,053,056 | 1,536 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1-6, 2005-04-14-008, 2005-04-14-009, 2005-04-14-010] | N/A | window | | 512 | 122,090 | 384 | | 1,024 | 305,559 | 768 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Natcher Building 03 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 1,536 | 2,388,856 | 2,048 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1, 3-7, 2005-04-14-008, 2005-04-14-009, 2005-04-14-010] | N/A | offices | | 459 | 210,371 | 612 | | 768 | 468,662 | 1,024 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Yeast cell | Active | Illustration | | A whole yeast (<i>Saccharomyces cerevisiae</i>) cell viewed by X-ray microscopy. Inside, the nucleus and a large vacuole (red) are visible. | | See Source | 1,500 | 263,169 | 1,500 | [OCPL Contact: Karin Jegalian] 1/3/08: You are certainly welcome to use our images! Happy to provide more if you prefer something new. | Carolyn Larabell, CBB | eukaryote, cytoplasm, nucleus | | 360 | 20,778 | 360 | | 750 | 64,969 | 750 | Cells | | 5/13/2005 | Not used | Carolyn Larabell, University of California, San Francisco and the Lawrence Berkeley National Laboratory | | | Endothelial cell | Active | Photograph | | This image shows two components of the cytoskeleton, microtubules (green) and actin filaments (red), in an endothelial cell derived from a cow lung. The cystoskeleton provides the cell with an inner framework and enables it to move and change shape. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 512 | 798,700 | 512 | (Bulk import) {see caption}[OCPL Contact: Alisa Machalek] Permitted to use as like; would be nice to send her copy of pubs that use her image. From 12/19/07 email correspondence between AZM and Carvalho: Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa Original name for this image: prettycellb.tif | N/A | microscopy | | 128 | 17,645 | 128 | | 256 | 25,879 | 256 | Cells | | 6/24/2005 | | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Natcher Building 08 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 2,000 | 18,071,064 | 3,008 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1-7, 2005-04-14-008, 2005-04-14-010] | N/A | offices | | 500 | 29,811 | 752 | | 1,000 | 133,136 | 1,504 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Natcher Building 09 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 3,008 | 18,071,836 | 2,000 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1-7, 2005-04-14-008, 2005-04-14-009] | N/A | offices | | 722 | 245,904 | 480 | | 722 | 245,904 | 480 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Natcher Building 02 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 1,536 | 2,092,290 | 2,048 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher2-7, 2005-04-14-008, 2005-04-14-009, 2005-04-14-010] | N/A | | | 459 | 173,600 | 612 | | 768 | 382,085 | 1,024 | | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Natcher Building 07 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 2,048 | 1,716,146 | 1,536 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1-5, 7, 2005-04-14-008, 2005-04-14-009, 2005-04-14-010] | N/A | offices | | 512 | 114,986 | 384 | | 1,024 | 305,695 | 768 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Natcher Building 04 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 1,536 | 1,917,813 | 2,048 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1-2, 4-7, 2005-04-14-008, 2005-04-14-009, 2005-04-14-010] | N/A | offices | | 459 | 129,542 | 612 | | 768 | 301,077 | 1,024 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Natcher Building 06 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 1,536 | 1,805,719 | 2,048 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1-4, 6-7, 2005-04-14-008, 2005-04-14-009, 2005-04-14-010] | N/A | offices | | 459 | 138,206 | 612 | | 768 | 297,613 | 1,024 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Natcher Building 10 | Active | Photograph | | NIGMS staff are located in the Natcher Building on the NIH campus. | | Alisa Machalek, National Institute of General Medical Sciences | 3,008 | 18,070,736 | 2,000 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: Natcher1-7, 2005-04-14-009, 2005-04-14-010] | N/A | offices | | 752 | 24,984 | 500 | | 1,504 | 124,032 | 1,000 | Being a Scientist | | 5/27/2005 | Not used | Alisa Machalek, National Institute of General Medical Sciences | | | Red blood cells | Active | Photograph | | This image of human red blood cells was obtained with the help of a scanning electron microscope, an instrument that uses a finely focused electron beam to yield detailed images of the surface of a sample. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 843 | 763,256 | 899 | (Bulk import) {see caption}[OCPL Contact: Alisa Machalek] Permitted to use as like; would be nice to send her copy of pubs that use her image. This from a 12/19/07 email from Carvalho: Rbcg.tif > > SEM of red blood cells, probably human, came from Rocky Mtn. labs Permission info, from 12/19/07 email: From: Tina Carvalho [ mailto:tina@pbrc.hawaii.edu] Sent: Wednesday, December 19, 2007 1:15 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: Your images for NIGMS gallery Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa | N/A | erythrocytes | | 211 | 22,802 | 225 | | 422 | 47,861 | 450 | Cells | | 6/24/2005 | | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Superconducting magnet | Active | Photograph | | Superconducting magnet for NMR research, from the February 2003 profile of Dorothee Kern in <I>Findings</i>. | | Mike Lovett | | 11,116,705 | | (Bulk import) [OCPL Contact: Alisa Machalek] | Dorothee Kern, CBB | laboratory | | 1,120 | 500,749 | 840 | | 2,240 | 1,978,577 | 1,680 | Tools and Techniques | | 7/29/2005 | Findings 2/03 | Mike Lovett | | | Streptococcus bacteria | Active | Photograph | | Image of <i>Streptococcus</i>, a type (genus) of spherical bacteria that can colonize the throat and back of the mouth. Stroptococci often occur in pairs or in chains, as shown here. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 1,500 | 5,024,892 | 1,114 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: strept1] Description, from 12/19/07 email from Carvalho: Strep1color.tif > > SEM of streptococcus, original image from Rocky Mtn lab, colorized by > me Permission, from 12/19/07 email: From: Tina Carvalho [ mailto:tina@pbrc.hawaii.edu] Sent: Wednesday, December 19, 2007 1:15 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: Your images for NIGMS gallery Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa | Not a grantee | infection | | 415 | 157,269 | 308 | | 750 | 61,685 | 557 | Cells, Injury and Illness | | 9/16/2005 | Not used | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Bacteria shapes | Active | Photograph | | A colorized scanning electron micrograph of bacteria. Scanning electron microscopes allow scientists to see the three-dimensional surface of their samples. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 1,022 | 2,514,976 | 816 | (Bulk import) [OCPL Contact: Alisa Machalek] Appears in the NIGMS booklet Inside the Cell. Tina Carvalho University of Hawaii Research Associate Biological Electron Microscope Facility Pacific Biomedical Research Center 1993 East-West Road Honolulu, HI 96822 office: Snyder Rm. 118 phone: 956-6251 fax: 956-5043 email: tina@pbrc.hawaii.edu | Not a grantee | spheres, cocci, rods, bacilli | | 256 | 40,690 | 204 | | 511 | 76,282 | 408 | Cells | | 9/16/2005 | Inside the Cell | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Leptospira bacteria | Active | Photograph | | <i>Leptospira</i>, shown here in green, is a type (genus) of elongated, spiral-shaped bacteria. Infection can cause Weil's disease, a kind of jaundice, in humans. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 1,957 | 10,581,252 | 1,800 | (Bulk import) [OCPL Contact: Alisa Machalek] Previous name of image: Leptoc2color Description (from Carvalho): > SEM of Leptospira on a 0.22 micrometer filter, from researcher across > the hall. He wasn't sure what the yellow things were; either a sort of > spore stage, or a contaminant! Permission (from 12/19/07 email to AZM): From: Tina Carvalho [ mailto:tina@pbrc.hawaii.edu] Sent: Wednesday, December 19, 2007 1:15 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: Your images for NIGMS gallery Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa | Not a grantee | SEM | | 489 | 107,192 | 450 | | 978 | 197,921 | 900 | Cells, Injury and Illness | | 9/16/2005 | Not used | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Vibrio bacteria | Active | Photograph | | <i>Vibrio</i>, a type (genus) of rod-shaped bacteria. Some <i>Vibrio</i> species cause cholera in humans. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 2,046 | 10,082,008 | 1,640 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: bacta4] Original name for this image: Bacta4acolor.tif Description, provided by Carvalho: > TEM of negative stained Vibrio species (not sure which species) Permission info (from 12/19/07 email to AZM): Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa | Not a grantee | Infection, TEM | | 511 | 164,046 | 410 | | 1,023 | 374,574 | 820 | Cells, Injury and Illness | | 9/16/2005 | Not used | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Mouse sperm sections | Active | Photograph | | This transmission electron micrograph shows sections of mouse sperm tails, or flagella. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 238 | 19,141 | 321 | (Bulk import) [OCPL Contact: Alisa Machalek] Previous name for this image: Sperm9X2c.tif Description (provided by Carvalho): TEM of section through a pellet of mouse sperm, showing head, > acrosome, tail with coil fo mitochondria, some tails in cross section Permission info (from email to AZM): From: Tina Carvalho [ mailto:tina@pbrc.hawaii.edu] Sent: Wednesday, December 19, 2007 1:15 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: Your images for NIGMS gallery Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa | Not a grantee | | | 238 | 19,141 | 321 | | 238 | 19,141 | 321 | | | 9/16/2005 | | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Cultured cells | Active | Photograph | | This image of laboratory-grown cells was taken with the help of a scanning electron microscope, which yields detailed images of cell surfaces. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 1,163 | 5,367,204 | 1,535 | (Bulk import) [OCPL Contact: Alisa Machalek] The previous name for this image: Cc6-1.tif Description (provided by Carvalho): SEM fof cultured cells, macrophages, I think. Very old! Permission info (from email to AZM): From: Tina Carvalho [ mailto:tina@pbrc.hawaii.edu] Sent: Wednesday, December 19, 2007 1:15 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: Your images for NIGMS gallery Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa | Not a grantee | SEM, macrophage | | 290 | 70,050 | 384 | | 581 | 139,012 | 768 | Cells | | 9/16/2005 | | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Crab larva eye | Active | Photograph | | Colorized scanning electron micrographs progressively zoom in on the eye of a crab larva. In the higher-resolution frames, bacteria are visible on the eye. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 4,028 | 38,414,120 | 3,177 | (Bulk import) [OCPL Contact: Alisa Machalek] File name: crablarva-bacteria-eye.tif Contact: Tina Carvalho University of Hawaii Research Associate Biological Electron Microscope Facility Pacific Biomedical Research Center 1993 East-West Road Honolulu, HI 96822 office: Snyder Rm. 118 phone: 956-6251 fax: 956-5043 email: tina@pbrc.hawaii.edu | Not a grantee | SEM | | 1,001 | 371,150 | 790 | | 2,009 | 1,291,300 | 1,585 | Cells, Tools and Techniques | | 9/16/2005 | | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Glycoproteins | Active | Illustration | | | | Judith Stoffer | 393 | 89,521 | 308 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_CarbProteins Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | | | 393 | 89,521 | 308 | | 393 | 89,521 | 308 | | | 12/16/2005 | ITC | Judith Stoffer | | | Glycan arrays | Active | Photograph | | The signal is obtained by allowing proteins in human serum to interact with glycan (polysaccharide) arrays. The arrays are shown in replicate so the pattern is clear. Each spot contains a specific type of glycan. Proteins have bound to the spots highlighted in green. | | Ola Blixt, Scripps Research Institute | 617 | 254,377 | 710 | {see caption}[OCPL Contact: Alisa Machalek] [Similar images: Human serum 4x4 grid] Blixt is a research scientist. See Blixt or Richard Alvarez (OUHSC), also a member of CFG, for more info. Human serum 2x2 grid.jpg | Part of Consortium for Functional Glycomics Center | microarray | | 155 | 9,456 | 178 | | 309 | 24,951 | 355 | Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | 12/9/2005 | | Ola Blixt, Scripps Research Institute | | | Cone cell | Active | Illustration | | | | Judith Stoffer | 1,666 | 67,961 | 295 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_ConeCell Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | | | 1,666 | 67,961 | 295 | | 1,666 | 67,961 | 295 | | | 12/16/2005 | ITC | Judith Stoffer | | | Nerve ending | Active | Photograph | | A scanning electron microscope picture of a nerve ending. It has been broken open to reveal vesicles (orange and blue) containing chemicals used to pass messages in the nervous system. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 2,395 | 21,567,196 | 3,000 | (Bulk import) [OCPL Contact: Alisa Machalek] Contact: Tina Carvalho University of Hawaii Research Associate Biological Electron Microscope Facility Pacific Biomedical Research Center 1993 East-West Road Honolulu, HI 96822 office: Snyder Rm. 118 phone: 956-6251 fax: 956-5043 email: tina@pbrc.hawaii.edu | | SEM | | 575 | 359,620 | 720 | | 1,197 | 1,054,645 | 1,500 | Cells | | 9/16/2005 | Inside the Cell | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Egg cell | Active | Illustration | | Sketch of an egg cell. | | Judith Stoffer | 862 | 2,874,718 | 833 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Egg Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | sphere | | 216 | 16,904 | 209 | | 431 | 30,920 | 417 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Borrelia burgdorferi | Active | Photograph | | <i>Borrelia burgdorferi</i> is a spirochete, a class of long, slender bacteria that typically take on a coiled shape. Infection with this bacterium causes Lyme disease. | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 1,500 | 7,323,464 | 1,625 | (Bulk import) [OCPL Contact: Alisa Machalek] [Similar images: lyme4-negbw] Previous name for this image: Lyme4-neg.tif Description (provided by Carvalho): TEM of negative stained bacterium that causes Lyme disease, from Rocky > Mtn lab Permission info (from email to AZM): From: Tina Carvalho [ mailto:tina@pbrc.hawaii.edu] Sent: Wednesday, December 19, 2007 1:15 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: Your images for NIGMS gallery Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa | Not a grantee | TEM, transmission electron microscope | | 375 | 64,941 | 407 | | 750 | 153,093 | 813 | Cells, Injury and Illness | | 9/16/2005 | | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Crab nerve cell | Active | Photograph | | Neuron from a crab showing the cell body (bottom), axon (rope-like extension), and growth cone (top right). | | Tina Weatherby Carvalho, University of Hawaii at Manoa | 1,500 | 5,410,412 | 1,200 | (Bulk import) [OCPL Contact: Alisa Machalek] Previous name for this image: Neurop1acolor Description (provided by Carvalho): SEM of cultured crab neurosecretory neuron, showing cell body, axon, > and growth cone (did my Master's on this and can go on at length) Permission info (from email to AZM): From: Tina Carvalho [ mailto:tina@pbrc.hawaii.edu] Sent: Wednesday, December 19, 2007 1:15 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: Your images for NIGMS gallery Sure, so ahead and use them. You can probably also use the pretty cell - it's just a random shot off a prepared slide used to show all the colors are working. No problem with intellectual property there. Aloha, Tina > Thanks! So, would we have permission to use these on our publicly > accessible image gallery (with the possible exception of prettycell?) > > Alisa | | SEM, scanning electron microscope | | 385 | 136,786 | 308 | | 750 | 111,660 | 600 | Cells | | 9/16/2005 | | Tina Weatherby Carvalho, University of Hawaii at Manoa | | | Cytoskeleton | Active | Illustration | | The three fibers of the cytoskeleton--microtubules in blue, intermediate filaments in red, and actin in green--play countless roles in the cell. | | Judith Stoffer | 1,548 | 15,133,478 | 2,442 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Cytoskeleton Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cell, drawing | | 387 | 146,675 | 611 | | 774 | 483,075 | 1,221 | Cells, Molecular Structures | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Animal cell | Active | Illustration | | A typical animal cell, sliced open to reveal a cross-section of organelles. | | Judith Stoffer | 3,023 | 57,074,470 | 4,718 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_EukaryoticCell Copy.tif jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | nucleus, mitochondria, Golgi | | 753 | 266,069 | 1,177 | | 1,511 | 685,278 | 2,359 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Quartered torso | Active | Illustration | | Cells function within organs and tissues, such as the lungs, heart, intestines, and kidney. | | Judith Stoffer | 2,739 | 21,178,182 | 1,932 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | human, body, heart, lung, kidney, intestine | | 684 | 86,150 | 483 | | 1,369 | 219,321 | 966 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Golgi | Active | Illustration | | The Golgi complex, also called the Golgi apparatus or, simply, the Golgi. This organelle receives newly made proteins and lipids from the ER, puts the finishing touches on them, addresses them, and sends them to their final destinations. | | Judith Stoffer | 762 | 2,657,070 | 871 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Golgi_inset Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cell, endoplasmic reticulum | | 191 | 14,326 | 218 | | 381 | 28,479 | 436 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Golgi theories | Active | Illustration | | Two models for how material passes through the Golgi apparatus: the vesicular shuttle model and the cisternae maturation model. | | Judith Stoffer | 2,199 | 207,445 | 1,700 | | N/A | endoplasmic reticulum, cell | | 549 | 70,481 | 425 | | 1,099 | 199,048 | 850 | Cells | | 12/16/2005 | ITC | Judith Stoffer | | | Folding@Home | Active | Illustration | | Stanford University scientist Vijay Pande decided to couple the power of computers with the help of the public. He initiated a project called Folding@Home, a so-called distributed computing project in which anyone who wants to can download a screensaver that performs protein-folding calculations when a computer is not in use. Folding@Home is modeled on a similar project called SETI@Home, which is used to search for extraterrestrial intelligence. | | Judith Stoffer | 1,773 | 19,567,058 | 2,757 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_F@H Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | Vijay Pande, Stanford | technology, crowd-source | | 435 | 73,730 | 677 | | 872 | 202,676 | 1,357 | Tools and Techniques | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Translation | Active | Illustration | | Ribosomes manufacture proteins based on mRNA instructions. Each ribosome reads mRNA, recruits tRNA molecules to fetch amino acids, and assembles the amino acids in the proper order. | | Judith Stoffer | 1,104 | 4,428,006 | 1,002 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Translation Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | protein | | 276 | 22,537 | 251 | | 552 | 43,516 | 501 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Lysosomes | Active | Illustration | | Lysosomes have powerful enzymes and acids to digest and recycle cell materials. | | Judith Stoffer | 720 | 2,640,230 | 916 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Vesc_inset Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | illustration | | 180 | 13,814 | 229 | | 360 | 27,912 | 458 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Vesicle traffic | Active | Illustration | | This illustration shows vesicle traffic inside a cell. The double membrane that bounds the nucleus flows into the ribosome-studded rough endoplasmic reticulum (purple), where membrane-embedded proteins are manufactured. Proteins are processed and lipids are manufactured in the smooth endoplasmic reticulum (blue) and Golgi apparatus (green). Vesicles that fuse with the cell membrane release their contents outside the cell. The cell can also take in material from outside by having vesicles pinch off from the cell membrane. | | Judith Stoffer | 1,228 | 7,677,686 | 1,562 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_VesicTraffic Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | organelle, exocytosis | | 306 | 63,791 | 390 | | 621 | 146,135 | 791 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Lipid raft | Active | Illustration | | Researchers have learned much of what they know about membranes by constructing artificial membranes in the laboratory. In artificial membranes, different lipids separate from each other based on their physical properties, forming small islands called lipid rafts. | | Judith Stoffer | 1,428 | 14,834,294 | 2,595 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_LipidRaft Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cell, illustration | | 357 | 24,475 | 648 | | 714 | 103,544 | 1,297 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Animal cell membrane | Active | Illustration | | The membrane that surrounds a cell is made up of proteins and lipids. Depending on the membrane's location and role in the body, lipids can make up anywhere from 20 to 80 percent of the membrane, with the remainder being proteins. Cholesterol (green), which is not found in plant cells, is a type of lipid that helps stiffen the membrane. | | Judith Stoffer | 1,326 | 6,635,534 | 1,250 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Membrane_inset Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cell | | 332 | 42,414 | 313 | | 663 | 95,280 | 625 | Cells | | 12/16/2005 | Inside the cell | Judith Stoffer | | | Ion channels | Active | Illustration | | The body uses a variety of ion channels to transport small molecules across cell membranes. | | Judith Stoffer | 667 | 4,538,502 | 1,700 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_IonChannels Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cell | | 166 | 28,139 | 425 | | 333 | 59,534 | 850 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Mitochondria | Active | Illustration | | Bean-shaped mitochondria are cells' power plants. These organelles have their own DNA and replicate independently. The highly folded inner membranes are the site of energy generation. | | Judith Stoffer | 685 | 2,391,342 | 872 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Mito_inset Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cell, organelle | | 172 | 11,191 | 218 | | 343 | 21,852 | 436 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Olfactory system | Active | Illustration | | Sensory organs have cells equipped for detecting signals from the environment, such as odors. Receptors in the membranes of nerve cells in the nose bind to odor molecules, triggering a cascade of chemical reactions tranferred by G proteins into the cytoplasm. | | Judith Stoffer | 1,472 | 13,177,574 | 2,236 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | smell, nose | | 369 | 46,289 | 562 | | 736 | 103,233 | 1,118 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Nucleus and rough ER | Active | Illustration | | The nucleus contains the DNA of eukaryotic cells. The double membrane that bounds the nucleus flows into the rough endoplasmic reticulum, an organelle studded with ribosomes that manufacture membrane-bound proteins for the rest of the cell. | | Judith Stoffer | 1,000 | 6,968,230 | 1,741 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Nuc&RER_inset Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | organelle, cell | | 249 | 48,764 | 435 | | 499 | 153,253 | 870 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Smooth ER | Active | Illustration | | The endoplasmic reticulum comes in two types: Rough ER is covered with ribosomes and prepares newly made proteins; smooth ER specializes in making lipids and breaking down toxic molecules. | | Judith Stoffer | 909 | 5,217,894 | 1,434 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_SER_inset Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | organelle | | 227 | 26,346 | 360 | | 454 | 66,990 | 717 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Sperm cell | Active | Illustration | | Illustration of a sperm, the male reproductive cell. | | Judith Stoffer | 1,365 | 10,516,194 | 1,925 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Sperm Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | Reproduction | | 341 | 17,531 | 482 | | 682 | 33,846 | 963 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Stem cell differentiation | Active | Illustration | | Undifferentiated embryonic stem cells cease to exist a few days after conception. In this image, ES cells are shown to differentiate into sperm, muscle fiber, hair cells, nerve cells, and cone cells. | | Judith Stoffer | 2,739 | 32,199,914 | 2,937 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | development | | 699 | 98,213 | 750 | | 933 | 106,456 | 1,000 | Cells | | 12/16/2005 | Inside the Cell | Judith Stoffer | | | Vesicular shuttle model | Active | Video | | Animation for the vesicular shuttle model of Golgi transport. | | Judith Stoffer | | 791,714 | | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_VesicularShuttle.swf Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | Vesicle | | 1,739 | 223,823 | 308 | | | | | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Cisternae maturation model | Active | Video | | Animation for the cisternae maturation model of Golgi transport. | | Judith Stoffer | | 1,105,318 | | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_CisternaeMaturation.swf Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | organelle, cell | | | | | | | | | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Cell cycle wheel | Active | Illustration | | | | Judith Stoffer | 436 | 33,825 | 662 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | | | 203 | 41,765 | 308 | | 218 | 13,606 | 331 | | | 4/21/2006 | ITC | Judith Stoffer | | | Cell toxins | Active | Illustration | | A number of environmental factors cause DNA mutations that can lead to cancer: toxins in cigarette smoke, sunlight and other radiation, and some viruses. | | Judith Stoffer | 1,162 | 5,071,198 | 1,090 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | DNA damage | | 291 | 32,867 | 273 | | 581 | 73,140 | 545 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Housekeeping cell illustration | Active | Illustration | | Cell mopping up. | | Judith Stoffer | 1,500 | 513,603 | 1,025 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | Cartoon | | 284 | 49,867 | 308 | | 749 | 28,381 | 512 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Cell eyes clock | Active | Illustration | | Cells keep time to know when to retire. | | Judith Stoffer | 1,070 | 3,932,126 | 918 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cartoon | | 268 | 18,959 | 230 | | 535 | 36,979 | 459 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Chromosomes after crossing over | Active | Illustration | | Duplicated pair of chromosomes have exchanged material. | | Judith Stoffer | 1,069 | 2,644,942 | 618 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | DNA | | 284 | 52,474 | 308 | | 535 | 30,256 | 309 | Genes | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Chromosomes before crossing over | Active | Illustration | | Duplicated pair of chromosomes lined up and ready to cross over. | | Judith Stoffer | 1,073 | 2,650,546 | 617 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | DNA | | 284 | 50,512 | 308 | | 537 | 28,125 | 309 | Genes | | 4/21/2006 | Inside the cell | Judith Stoffer | | | Mitosis - metaphase | Active | Illustration | | A cell in metaphase during mitosis: The copied chromosomes align in the middle of the spindle. Mitosis is responsible for growth and development, as well as for replacing injured or worn out cells throughout the body. For simplicity, mitosis is illustrated here with only six chromosomes. | | Judith Stoffer | 873 | 3,051,074 | 873 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | development, cell cycle | | 219 | 20,872 | 219 | | 437 | 40,441 | 437 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Mitosis - interphase | Active | Illustration | | A cell in interphase, at the start of mitosis: Chromosomes duplicate, and the copies remain attached to each other. Mitosis is responsible for growth and development, as well as for replacing injured or worn out cells throughout the body. For simplicity, mitosis is illustrated here with only six chromosomes. | | Judith Stoffer | 846 | 2,875,502 | 849 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | development, cell cycle | | 212 | 14,449 | 213 | | 423 | 25,481 | 425 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Mitosis - anaphase | Active | Illustration | | A cell in anaphase during mitosis: Chromosomes separate into two genetically identical groups and move to opposite ends of the spindle. Mitosis is responsible for growth and development, as well as for replacing injured or worn out cells throughout the body. For simplicity, mitosis is illustrated here with only six chromosomes. | | Judith Stoffer | 879 | 3,114,234 | 885 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | development, cell cycle | | 220 | 21,457 | 222 | | 440 | 42,522 | 443 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Mitosis - prophase | Active | Illustration | | A cell in prophase, near the start of mitosis: In the nucleus, chromosomes condense and become visible. In the cytoplasm, the spindle forms. Mitosis is responsible for growth and development, as well as for replacing injured or worn out cells throughout the body. For simplicity, mitosis is illustrated here with only six chromosomes. | | Judith Stoffer | 876 | 3,093,094 | 882 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | deelopment, cell cycle | | 219 | 18,702 | 221 | | 438 | 34,440 | 441 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Mitosis - telophase | Active | Illustration | | Telophase during mitosis: Nuclear membranes form around each of the two sets of chromosomes, the chromosomes begin to spread out, and the spindle begins to break down. Mitosis is responsible for growth and development, as well as for replacing injured or worn out cells throughout the body. For simplicity, mitosis is illustrated here with only six chromosomes. | | Judith Stoffer | 861 | 2,771,502 | 804 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | development, cell cycle | | 216 | 20,975 | 201 | | 431 | 41,022 | 402 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Mitosis - prometaphase | Active | Illustration | | A cell in prometaphase during mitosis: The nuclear membrane breaks apart, and the spindle starts to interact with the chromosomes. Mitosis is responsible for growth and development, as well as for replacing injured or worn out cells throughout the body. For simplicity, mitosis is illustrated here with only six chromosomes. | | Judith Stoffer | 879 | 3,093,138 | 879 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | development, cell cycle | | 220 | 18,381 | 220 | | 440 | 34,651 | 440 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Telomerase illustration | Active | Illustration | | Reactivating telomerase in our cells does not appear to be a good way to extend the human lifespan. Cancer cells reactivate telomerase. | | Judith Stoffer | 825 | 3,636,834 | 1,101 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cartoon, telomere | | 207 | 22,443 | 276 | | 413 | 47,086 | 551 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Mitosis and meiosis compared | Active | Illustration | | Meiosis is used to make sperm and egg cells. During meiosis, a cell's chromosomes are copied once, but the cell divides twice. During mitosis, the chromosomes are copied once, and the cell divides once. For simplicity, cells are illustrated with only three pairs of chromosomes. See image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6788">6788</a> for a labeled version of this illustration. | | Judith Stoffer | 4,236 | 38,327,558 | 2,260 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | development, cell cycle Alt text: On the left, a cell goes through the stages of mitosis to split into two cells that each have two sets of chromosomes. On the right, a cell goes through the phases of meiosis to divide into four cells that each have a single set of chromosomes. | | 1,049 | 120,593 | 560 | | 1,875 | 616,624 | 1,000 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Bicycling cell | Active | Illustration | | A humorous treatment of the concept of a cycling cell. | | Judith Stoffer | 2,550 | 12,168,830 | 1,192 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cartoon | | 641 | 56,911 | 300 | | 1,283 | 140,945 | 600 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Aging book of life | Active | Illustration | | Damage to each person's genome, often called the "Book of Life," accumulates with time. Such DNA mutations arise from errors in the DNA copying process, as well as from external sources, such as sunlight and cigarette smoke. DNA mutations are known to cause cancer and also may contribute to cellular aging. | | Judith Stoffer | 1,084 | 3,732,086 | 860 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | Cartoon | | 271 | 21,511 | 215 | | 542 | 42,173 | 430 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Life in balance | Active | Illustration | | Mitosis creates cells, and apoptosis kills them. The processes often work together to keep us healthy. | | Judith Stoffer | 1,269 | 8,055,846 | 1,586 | (Bulk import) [OCPL Contact: Alisa Machalek] Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | cartoon | | 317 | 30,426 | 397 | | 634 | 61,426 | 793 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Nerve cell | Active | Illustration | | Nerve cells have long, invisibly thin fibers that carry electrical impulses throughout the body. Some of these fibers extend about 3 feet from the spinal cord to the toes. | | Judith Stoffer | 4,108 | 92,052,294 | 5,600 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_Neuron_lg Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | neuron | | 1,027 | 107,381 | 1,400 | | 2,054 | 278,852 | 2,800 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Egg comparison | Active | Illustration | | The largest human cell (by volume) is the egg. Human eggs are 150 micrometers in diameter and you can just barely see one with a naked eye. In comparison, consider the eggs of chickens...or ostriches! | | Judith Stoffer | 2,258 | 18,271,966 | 2,022 | (Bulk import) [OCPL Contact: Alisa Machalek] ITC_EggComp02 Copy.tif Judith A. Stoffer, MA, CMI jStoffer Medical Illustration Phone: 443/676.8883 FAX: 443/946.0205 www.jStoffer.com judy@jStoffer.com | N/A | size | | 565 | 48,629 | 506 | | 1,129 | 118,293 | 1,011 | Cells | | 4/21/2006 | Inside the Cell | Judith Stoffer | | | Bacteria working to eat | Active | Video | | Gram-negative bacteria perform molecular acrobatics just to eat. Because they're encased by two membranes, they must haul nutrients across both. To test one theory of how the bacteria manage this feat, researchers used computer simulations of two proteins involved in importing vitamin B12. Here, the protein (red) anchored in the inner membrane of bacteria tugs on a much larger protein (green and blue) in the outer membrane. Part of the larger protein unwinds, creating a pore through which the vitamin can pass. | | Emad Tajkhorshid, University of Illinois at Urbana-Champaign | | 3,897,988 | | | | model | | 284 | 91,108 | 308 | | | | | Molecular Structures | | | Featured in the July 18, 2007, issue of Biomedical Beat. | Emad Tajkhorshid, University of Illinois at Urbana-Champaign | | | 2-D NMR | Active | Illustration | | A two-dimensional NMR spectrum of a protein, in this case a 2D 1H-15N HSQC NMR spectrum of a 228 amino acid DNA/RNA-binding protein. | | Dr. Xiaolian Gao's laboratory at the University of Houston | 1,584 | 871,498 | 2,131 | Alisa Machalek, Aug 29 2007 | Xiaolian Gao, University of Houston | | | 669 | 264,952 | 900 | | 1,115 | 528,330 | 1,500 | | | 9/7/2007 | SOL | Dr. Xiaolian Gao's laboratory at the University of Houston | | | Cells frozen in time | Active | Photograph | | The fledgling field of X-ray microscopy lets researchers look inside whole cells rapidly frozen to capture their actions at that very moment. Here, a yeast cell buds before dividing into two. Colors show different parts of the cell. Seeing whole cells frozen in time will help scientists observe cells' complex structures and follow how molecules move inside them. | | Carolyn Larabell, University of California, San Francisco, and the Lawrence Berkeley National Laboratory | 1,694 | 346,395 | 1,529 | | | Saccharomyces cerevisiae | | 120 | 3,254 | 108 | | 251 | 8,621 | 226 | Cells, Tools and Techniques | | 12/7/2007 | BB 6/05; MORE handbook Featured in the June 21, 2005, issue of Biomedical Beat | Carolyn Larabell, University of California, San Francisco, and the Lawrence Berkeley National Laboratory | | | Cellular metropolis | Active | Illustration | | Like a major city, a cell teems with specialized workers that carry out its daily operations--making energy, moving proteins, or helping with other tasks. Researchers took microscopic pictures of thin layers of a cell and then combined them to make this 3-D image featuring color-coded organelles--the cell's "workers." Using this image, scientists can understand how these specialized components fit together in the cell's packed inner world. | | Kathryn Howell, University of Colorado Health Sciences Center | 500 | 146,915 | 412 | | | organelle | | 284 | 238,499 | 308 | | 250 | 49,114 | 206 | Cells | | 12/7/2007 | Featured in the August 15, 2006, issue of Biomedical Beat. | Kathryn Howell, University of Colorado Health Sciences Center | | | Beaded bacteriophage | Active | Photograph | | This sculpture made of purple and clear glass beads depicts bacteriophage Phi174, a virus that infects bacteria. It rests on a surface that portrays an adaptive landscape, a conceptual visualization. The ridges represent the gene combinations associated with the greatest fitness levels of the virus, as measured by how quickly the virus can reproduce itself. Phi174 is an important model system for studies of viral evolution because its genome can readily be sequenced as it evolves under defined laboratory conditions. | | Holly Wichman, University of Idaho. (Surface by A. Johnston; photo by J. Palmersheim) | 1,488 | 1,429,875 | 2,240 | | | structure | | 106 | 5,970 | 120 | | 222 | 18,662 | 250 | Molecular Structures | | 12/7/2007 | Featured in the March 21, 2006, issue of Biomedical Beat. | Holly Wichman, University of Idaho. (Surface by A. Johnston; photo by J. Palmersheim) | | | Cellular polarity | Active | Photograph | | As an egg cell develops, a process called polarization controls what parts ultimately become the embryo's head and tail. This picture shows an egg of the fruit fly <em>Drosophila</em>. Red and green mark two types of signaling proteins involved in polarization. Disrupting these signals can scramble the body plan of the embryo, leading to severe developmental disorders. | | Wu-Min Deng, Florida State University | 150 | 62,826 | 250 | | | development | | 185 | 49,241 | 308 | | 75 | 35,887 | 125 | Cells | | 12/7/2007 | Featured in the September 19, 2006, issue of Biomedical Beat. | Wu-Min Deng, Florida State University | | | Color-coded chromosomes | Active | Photograph | | By mixing fluorescent dyes like an artist mixes paints, scientists are able to color code individual chromosomes. The technique, abbreviated multicolor-FISH, allows researchers to visualize genetic abnormalities often linked to disease. In this image, "painted" chromosomes from a person with a hereditary disease called Werner Syndrome show where a piece of one chromosome has fused to another (see the gold-tipped maroon chromosome in the center). As reported by molecular biologist Jan Karlseder of the Salk Institute for Biological Studies, such damage is typical among people with this rare syndrome. | | Anna Jauch, Institute of Human Genetics, Heidelberg, Germany | 351 | 67,867 | 395 | | | fluorescent in situ hybridiszation | | 274 | 74,378 | 308 | | 176 | 18,790 | 198 | Tools and Techniques | | 12/7/2007 | Featured in the March 21, 2007, issue of Biomedical Beat. | Anna Jauch, Institute of Human Genetics, Heidelberg, Germany | | | Cholesterol and Huntington's disease | Active | Photograph | | This web-like structure shows the abnormal accumulation of cholesterol in a mouse brain cell that contains an aberrant protein linked to Huntington's disease, a fatal condition marked by a progressive degeneration of brain nerve cells. While the gene underlying the disease has been identified, little is known about how it leads to such neuronal damage. But the discovery that cholesterol builds up in mouse brain cells expressing the Huntington's protein could offer new clues for understanding the mechanism of the disease in humans. | | Cynthia McMurray, Mayo Clinic | | | | | | microscopy | | 346 | 73,394 | 308 | | 91 | 19,205 | 81 | Injury and Illness | | 12/7/2007 | Featured in the December 19, 2006, issue of Biomedical Beat. | Cynthia McMurray, Mayo Clinic | | | Colorful communication | Active | Photograph | | The marine bacterium <em>Vibrio harveyi</em> glows when near its kind. This luminescence, which results from biochemical reactions, is part of the chemical communication used by the organisms to assess their own population size and distinguish themselves from other types of bacteria. But <em>V. harveyi</em> only light up when part of a large group. This communication, called quorum sensing, speaks for itself here on a lab dish, where more densely packed areas of the bacteria show up blue. Other types of bacteria use quorum sensing to release toxins, trigger disease, and evade the immune system. | | Bonnie Bassler, Princeton University | 334 | 46,549 | 474 | fluorescence | | | | 80 | 5,074 | 114 | | 167 | 13,551 | 237 | Tools and Techniques | | 12/7/2007 | Featured in the September 20, 2005, issue of Biomedical Beat. | Bonnie Bassler, Princeton University | | | Cellular traffic | Active | Illustration | | Like tractor-trailers on a highway, small sacs called vesicles transport substances within cells. This image tracks the motion of vesicles in a living cell. The short red and yellow marks offer information on vesicle movement. The lines spanning the image show overall traffic trends. Typically, the sacs flow from the lower right (blue) to the upper left (red) corner of the picture. Such maps help researchers follow different kinds of cellular processes as they unfold. | | Alexey Sharonov and Robin Hochstrasser, University of Pennsylvania | 480 | 42,381 | 500 | Alexey Sharonov and Robin Hochstrasser also collaborate in a cellular imaging project supported by the NIH Roadmap for Medical Research.
| | model | | 115 | 10,282 | 120 | | 240 | 35,502 | 250 | Cells | | | Featured in the February 21, 2006, issue of Biomedical Beat. | Alexey Sharonov and Robin Hochstrasser, University of Pennsylvania | | | Fly cells live | Active | Video | | If a picture is worth a thousand words, what's a movie worth? For researchers studying cell migration, a "documentary" of fruit fly cells (bright green) traversing an egg chamber could answer longstanding questions about cell movement. Historically, researchers have been unable to watch this cell migration unfold in living ovarian tissue in real time. But by developing a culture medium that allows fly eggs to survive outside their ovarian homes, scientists can observe the nuances of cell migration as it happens. Such details may shed light on how immune cells move to a wound and why cancer cells spread to other sites. See <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3594"><em>3594</em></a> for still image. | | Denise Montell, Johns Hopkins University School of Medicine | | 722,184 | | | Denise Montell, GDB | GFP | | | | | | | | | Cells | | 12/7/2007 | Featured in the June 20, 2007, issue of Biomedical Beat. | Denise Montell, Johns Hopkins University School of Medicine | | | Gene silencing | Active | Photograph | | Pretty in pink, the enzyme histone deacetylase (HDA6) stands out against a background of blue-tinted DNA in the nucleus of an <em>Arabidopsis</em> plant cell. Here, HDA6 concentrates in the nucleolus (top center), where ribosomal RNA genes reside. The enzyme silences the ribosomal RNA genes from one parent while those from the other parent remain active. This chromosome-specific silencing of ribosomal RNA genes is an unusual phenomenon observed in hybrid plants. | | Olga Pontes and Craig Pikaard, Washington University | 965 | 149,754 | 965 | | | nucleus | | 308 | 60,313 | 308 | | 483 | 22,655 | 483 | Genes | | 12/7/2007 | Featured in the June 20, 2006, issue of Biomedical Beat. | Olga Pontes and Craig Pikaard, Washington University | | | Finding one bug | Active | Photograph | | A nanometer-sized biosensor can detect a single deadly bacterium in tainted ground beef. How? Researchers attached nanoparticles, each packed with thousands of dye molecules, to an antibody that recognizes the microbe <em>E. coli</em> O157:H7. When the nanoball-antibody combo comes into contact with the <em>E. coli</em> bacterium, it glows. Here is the transition, a single bacterial cell glows brightly when it encounters nanoparticle-antibody biosensors, each packed with thousands of dye molecules. | | Weihong Tan, University of Florida in Gainesville | 500 | 22,700 | 519 | | | food safety | | 120 | 3,453 | 125 | | 250 | 10,505 | 260 | Tools and Techniques | | 12/7/2007 | Featured in the March 15, 2005, issue of Biomedical Beat. | Weihong Tan, University of Florida in Gainesville | | | Mapping disease spread | Active | Illustration | | How far and fast an infectious disease spreads across a community depends on many factors, including transportation. These U.S. maps, developed as part of an international study to simulate and analyze disease spread, chart daily commuting patterns. They show where commuters live (top) and where they travel for work (bottom). Green represents the fewest number of people whereas orange, brown, and white depict the most. Such information enables researchers and policymakers to visualize how an outbreak in one area can spread quickly across a geographic region. | | David Chrest, RTI International | 386 | 142,567 | 300 | Courtesy of David Chrest, a geographic information system specialist at RTI International.
| | model | | 396 | 136,515 | 308 | | 193 | 35,620 | 150 | Tools and Techniques | | 12/7/2007 | Featured in the August 15, 2007, issue of Biomedical Beat. | David Chrest, RTI International | | | Fruitful dyes | Active | Illustration | | These colorful, computer-generated ribbons show the backbone of a molecule that glows a fluorescent red. The molecule, called mStrawberry, was created by chemists based on a protein found in the ruddy lips of a coral. Scientists use the synthetic molecule and other "fruity" ones like it as a dye to mark and study cell structures. | | Roger Y. Tsien, University of California, San Diego | 500 | 77,568 | 500 | | Roger Y. Tsien, CBB | microscopy | | 308 | 84,576 | 308 | | 250 | 15,630 | 250 | Tools and Techniques | | 12/7/2007 | Featured in the April 18, 2007, issue of Biomedical Beat. | Roger Y. Tsien, University of California, San Diego | | | Mapping metabolic activity | Active | Illustration | | Like a map showing heavily traveled roads, this mathematical model of metabolic activity inside an <em>E. coli</em> cell shows the busiest pathway in white. Reaction pathways used less frequently by the cell are marked in red (moderate activity) and green (even less activity). Visualizations like this one may help scientists identify drug targets that block key metabolic pathways in bacteria. | | Albert-László Barabási, University of Notre Dame | 800 | 730,216 | 800 | | | drug development | | 310 | 143,649 | 308 | | 500 | 67,948 | 496 | Tools and Techniques | | 12/7/2007 | Featured in the January 18, 2005, issue of Biomedical Beat. | Albert-László Barabási, University of Notre Dame | | | Microtubule breakdown | Active | Illustration | | Like a building supported by a steel frame, a cell contains its own sturdy internal scaffolding made up of proteins, including microtubules. Researchers studying snapshots of microtubules have proposed a model for how these structural elements shorten and lengthen, allowing a cell to move, divide, or change shape. This picture shows an intermediate step in the model: Smaller building blocks called tubulins peel back from the microtubule in thin strips. Knowing the operations of the internal scaffolding will enhance our basic understanding of cellular processes. | | Eva Nogales, University of California, Berkeley | 622 | 177,256 | 800 | | | cytoskeleton | | 93 | 4,047 | 120 | | 195 | 11,348 | 250 | Tools and Techniques | | 12/7/2007 | Featured in the July 18, 2006, issue of Biomedical Beat. | Eva Nogales, University of California, Berkeley | | | Modeling disease spread | Active | Illustration | | What looks like a Native American dream catcher is really a network of social interactions within a community. The red dots along the inner and outer circles represent people, while the different colored lines represent direct contact between them. All connections originate from four individuals near the center of the graph. Modeling social networks can help researchers understand how diseases spread. | | Stephen Eubank, University of Virginia Biocomplexity Institute (formerly Virginia Bioinformatics Institute) | 384 | 242,633 | 385 | | | infectious disease, public health | | 92 | 6,688 | 92 | | 192 | 23,013 | 193 | Tools and Techniques | | 12/7/2007 | Featured in the July 19, 2005, issue of Biomedical Beat. | Stephen Eubank, University of Virginia Biocomplexity Institute (formerly Virginia Bioinformatics Institute) | | | Nano-rainbow | Active | Photograph | | These vials may look like they're filled with colored water, but they really contain nanocrystals reflecting different colors under ultraviolet light. The tiny crystals, made of semiconducting compounds, are called quantum dots. Depending on their size, the dots emit different colors that let scientists use them as a tool for detecting particular genes, proteins, and other biological molecules. | | Shuming Nie, Emory University | 892 | 75,368 | 1,826 | | | fluorescence, fluorescent | | 214 | 19,146 | 438 | | 446 | 57,554 | 913 | Tools and Techniques | | 12/7/2007 | Featured in the April 19, 2005, issue of Biomedical Beat. | Shuming Nie, Emory University | | | Motion in the brain | Active | Illustration | | Amid a network of blood vessels and star-shaped support cells, neurons in the brain signal each other. The mists of color show the flow of important molecules like glucose and oxygen. This image is a snapshot from a 52-second simulation created by an animation artist. Such visualizations make biological processes more accessible and easier to understand. | | Kim Hager, University of California, Los Angeles | 1,440 | 840,865 | 2,560 | | Arthur Toga, NCRR | nerve cells | | 345 | 76,252 | 614 | | 720 | 226,923 | 1,280 | Cells | | 12/7/2007 | | Kim Hager and Neal Prakash, University of California, Los Angeles | | | Multicolor STORM | Active | Photograph | | In 2006, scientists developed an optical microscopy technique enabling them to clearly see individual molecules within cells. In 2007, they took the technique, abbreviated STORM, a step further. They identified multicolored probes that let them peer into cells and clearly see multiple cellular components at the same time, such as these microtubules (green) and small hollows called clathrin-coated pits (red). Unlike conventional methods, the multicolor STORM technique produces a crisp and high resolution picture. A sharper view of how cellular components interact will likely help scientists answer some longstanding questions about cell biology. | | Xiaowei Zhuang, Harvard University | 2,328 | 2,025,630 | 2,394 | | Xiaowei Zhuang, CBB | microscope | | 559 | 77,526 | 575 | | 1,164 | 234,634 | 1,197 | Tools and Techniques | | 12/7/2007 | Featured in the October 17, 2007, issue of Biomedical Beat. | Xiaowei Zhuang, Harvard University | | | Neural development | Active | Photograph | | Using techniques that took 4 years to design, a team of developmental biologists showed that certain proteins can direct the subdivision of fruit fly and chicken nervous system tissue into the regions depicted here in blue, green, and red. Molecules called bone morphogenetic proteins (BMPs) helped form this fruit fly embryo. While scientists knew that BMPs play a major role earlier in embryonic development, they didn't know how the proteins help organize nervous tissue. The findings suggest that BMPs are part of an evolutionarily conserved mechanism for organizing the nervous system. The National Institute of Neurological Disorders and Stroke also supported this work. | | See Source | 469 | 452,302 | 803 | | | microscopy, fluorescence | | 113 | 9,377 | 193 | | 235 | 35,773 | 402 | Cells | | 12/7/2007 | Featured in the October 17, 2006, issue of Biomedical Beat. | Mieko Mizutani and Ethan Bier, University of California, San Diego, and Henk Roelink, University of Washington | | | Neural tube development | Active | Photograph | | Proteins in the neural tissues of this zebrafish embryo direct cells to line up and form the neural tube, which will become the spinal cord and brain. Studies of zebrafish embryonic development may help pinpoint the underlying cause of common neural tube defects--such as spina bifida--which occur in about 1 in 1,000 newborn children. | | Alexander Schier, Harvard University | 342 | 90,176 | 431 | | | microscopy | | 82 | 4,780 | 103 | | 171 | 14,488 | 216 | Cells | | 12/7/2007 | Featured in the January 16, 2007, issue of Biomedical Beat. | Alexander Schier, Harvard University | | | Movements of myosin | Active | Photograph | | Inside the fertilized egg cell of a fruit fly, we see a type of myosin (related to the protein that helps muscles contract) made to glow by attaching a fluorescent protein. After fertilization, the myosin proteins are distributed relatively evenly near the surface of the embryo. The proteins temporarily vanish each time the cells' nuclei--initially buried deep in the cytoplasm--divide. When the multiplying nuclei move to the surface, they shift the myosin, producing darkened holes. The glowing myosin proteins then gather, contract, and start separating the nuclei into their own compartments. | | Victoria Foe, University of Washington | 384 | 218,271 | 768 | | | fluorescence | | 92 | 11,244 | 184 | | 192 | 34,366 | 384 | Cells | | 12/7/2007 | This image and a video are featured in the February 22, 2005, issue of Biomedical Beat. | Victoria Foe, University of Washington | | | Planting roots | Active | Photograph | | At the root tips of the mustard plant <em>Arabidopsis thaliana</em> (red), two proteins work together to control the uptake of water and nutrients. When the cell division-promoting protein called Short-root moves from the center of the tip outward, it triggers the production of another protein (green) that confines Short-root to the nutrient-filtering endodermis. The mechanism sheds light on how genes and proteins interact in a model organism and also could inform the engineering of plants. | | Hongchang Cui, Duke University | 114 | 13,602 | 120 | | Philip Benfey, GDB and CBCB | genetics, GMO | | 84 | 4,427 | 84 | | 175 | 12,554 | 175 | Genes | | 12/7/2007 | Featured in the May 16, 2007, issue of Biomedical Beat. | Philip Benfey, Duke University | | | Repairing DNA | Active | Illustration | | | | Courtesy of Tom Ellenberger, Washington University School of Medicine in St. Louis, and Dave Gohara, Saint Louis University School of Medicine. | 642 | 111,447 | 500 | | Tom Ellenberger | DNA repair | | 154 | 8,210 | 120 | | 2,220 | 188,667 | 1,729 | Genes | | | Featured in the November 21, 2006, issue of Biomedical Beat | Tom Ellenberger, Washington University School of Medicine | | | Statistical cartography | Active | Illustration | | Like a world of its own, this sphere represents all the known chemical reactions in the <em>E. coli</em> bacterium. The colorful circles on the surface symbolize sets of densely interconnected reactions. The lines between the circles show additional connecting reactions. The shapes inside the circles are landmark molecules, like capital cities on a map, that either act as hubs for many groups of reactions, are highly conserved among species, or both. Molecules that connect far-flung reactions on the sphere are much more conserved during evolution than molecules that connect reactions within a single circle. This statistical cartography could reveal insights about other complex systems, such as protein interactions and gene regulation networks. | | Luis A. Nunes Amaral, Northwestern University | 412 | 55,390 | 500 | | | mapping | | 254 | 104,272 | 308 | | 206 | 20,466 | 250 | Tools and Techniques | | 12/7/2007 | Featured in the August 16, 2005, issue of Biomedical Beat. | Luis A. Nunes Amaral, Northwestern University | | | Tiny points of light in a quantum dot | Active | Photograph | | This fingertip-shaped group of lights is a microscopic crystal called a quantum dot. About 10,000 times thinner than a sheet of paper, the dot radiates brilliant colors under ultraviolet light. Dots such as this one allow researchers to label and track individual molecules in living cells and may be used for speedy disease diagnosis, DNA testing, and screening for illegal drugs. | | Sandra Rosenthal and James McBride, Vanderbilt University, and Stephen Pennycook, Oak Ridge National Laboratory | 1,341 | 601,352 | 1,341 | | | fluorescence | | 120 | 5,745 | 120 | | 250 | 20,415 | 250 | Tools and Techniques | | 12/7/2007 | Featured in the April 18, 2006, issue of Biomedical Beat. | Sandra Rosenthal and James McBride, Vanderbilt University, and Stephen Pennycook, Oak Ridge National Laboratory | | | Virtual snow world | Active | Illustration | | Glide across an icy canyon, where you see smiling snowmen and waddling penguins. Toss a snowball, hear it smash against an igloo, and then watch it explode in bright colors. Psychologists David Patterson and Hunter Hoffman of the University of Washington in Seattle developed this virtual "Snow World" to test whether immersing someone in a pretend reality could ease pain during burn treatment and other medical procedures. They found that people fully engaged in the virtual reality experience reported 60 percent less pain. The technology offers a promising way to manage pain. | | David Patterson and Hunter Hoffmann, University of Washington | 500 | 52,114 | 552 | | | cartoon, snowman | | 120 | 9,481 | 132 | | 250 | 29,804 | 276 | Injury and Illness | | 12/7/2007 | Featured in the December 20, 2005, issue of Biomedical Beat. | David Patterson and Hunter Hoffmann, University of Washington | | | Natural nanomachine in action | Active | Illustration | | Using a supercomputer to simulate the movement of atoms in a ribosome, researchers looked into the core of this protein-making nanomachine and took snapshots. The picture shows an amino acid (green) being delivered by transfer RNA (yellow) into a corridor (purple) in the ribosome. In the corridor, a series of chemical reactions will string together amino acids to make a protein. The research project, which tracked the movement of more than 2.6 million atoms, was the largest computer simulation of a biological structure to date. The results shed light on the manufacturing of proteins and could aid the search for new antibiotics, which typically work by disabling the ribosomes of bacteria. | | Kevin Sanbonmatsu, Los Alamos National Laboratory | 1,274 | 766,226 | 1,426 | | | model | | 107 | 8,225 | 120 | | 224 | 24,694 | 250 | Tools and Techniques | | 12/7/2007 | Featured in the November 15, 2005, issue of Biomedical Beat. | Kevin Sanbonmatsu, Los Alamos National Laboratory | | | Worms and human infertility | Active | Photograph | | This montage of tiny, transparent <em>C. elegans</em>--or roundworms--may offer insight into understanding human infertility. Researchers used fluorescent dyes to label the worm cells and watch the process of sex cell division, called meiosis, unfold as nuclei (blue) move through the tube-like gonads. Such visualization helps the scientists identify mechanisms that enable these roundworms to reproduce successfully. Because meiosis is similar in all sexually reproducing organisms, what the scientists learn could apply to humans. | | Abby Dernburg, Lawrence Berkeley National Laboratory | 435 | 76,789 | 500 | | | fertility, cell division | | 104 | 5,163 | 120 | | 218 | 14,625 | 250 | Cells | | 12/7/2007 | Featured in the January 17, 2006, issue of Biomedical Beat. | Abby Dernburg, Lawrence Berkeley National Laboratory | | | Tex protein | Active | Illustration | | Model of a member from the Tex protein family, which is implicated in transcriptional regulation and highly conserved in eukaryotes and prokaryotes. The structure shows significant homology to a human transcription elongation factor that may regulate multiple steps in mRNA synthesis. | | New York Structural GenomiX Research Consortium, PSI | 2,852 | 1,058,703 | 1,852 | | | protein structure | | 684 | 101,950 | 444 | | 1,426 | 272,909 | 926 | Molecular Structures | | 12/10/2007 | | New York Structural GenomiX Research Consortium, PSI | | | Beta2-adrenergic receptor protein | Active | Illustration | | Crystal structure of the beta2-adrenergic receptor protein. This is the first known structure of a human G protein-coupled receptor, a large family of proteins that control critical bodily functions and the action of about half of today's pharmaceuticals. Featured as one of the November 2007 Protein Structure Initiative Structures of the Month. | | The Stevens Laboratory, The Scripps Research Institute | 500 | 49,038 | 500 | | | GPCR | | 284 | 109,837 | 308 | | 250 | 13,499 | 250 | Molecular Structures | | 12/10/2007 | | The Stevens Laboratory, The Scripps Research Institute | | | Protein from Arabidopsis thaliana | Active | Illustration | | NMR solution structure of a plant protein that may function in host defense. This protein was expressed in a convenient and efficient wheat germ cell-free system. Featured as the June 2007 Protein Structure Initiative Structure of the Month. | | Center for Eukaryotic Structural Genomics | 2,400 | 1,484,081 | 2,400 | | | model | | 576 | 70,934 | 576 | | 1,200 | 201,186 | 1,200 | Molecular Structures | | 12/10/2007 | | Center for Eukaryotic Structural Genomics | | | Aminopeptidase N from N. meningitidis | Active | Illustration | | Model of the enzyme aminopeptidase N from the human pathogen <i>Neisseria meningitidis</i>, which can cause meningitis epidemics. The structure provides insight on the active site of this important molecule. | | Midwest Center for Structural Genomics, PSI | 973 | 344,631 | 948 | | | protein structure | | 316 | 135,566 | 308 | | 487 | 72,401 | 474 | Molecular Structures | | 12/10/2007 | | Midwest Center for Structural Genomics, PSI | | | Dimeric ferredoxin-like protein from an unidentified marine microbe | Active | Illustration | | This is the first structure of a protein derived from the metagenomic sequences collected during the Sorcerer II Global Ocean Sampling project. The crystal structure shows a barrel protein with a ferredoxin-like fold and a long chain fatty acid in a deep cleft (shaded red). Featured as one of the August 2007 Protein Structure Initiative Structures of the Month. | | Joint Center for Structural Genomics | 279 | 125,271 | 500 | | | model | | 172 | 80,369 | 308 | | 140 | 16,226 | 250 | Molecular Structures | | 12/10/2007 | | Joint Center for Structural Genomics | | | Protein from E. faecalis | Active | Illustration | | X-ray structure of a DNA repair enzyme superfamily representative from the human gastrointestinal bacterium <i>Enterococcus faecalis</i>. European scientists used this structure to generate homologous structures. Featured as the May 2007 Protein Structure Initiative Structure of the Month. | | Midwest Center for Structural Genomics | 500 | 45,046 | 500 | | | model | | 308 | 101,186 | 308 | | 250 | 18,074 | 250 | Molecular Structures | | 12/10/2007 | | Midwest Center for Structural Genomics | | | Protein rv2844 from M. tuberculosis | Active | Illustration | | This crystal structure shows a conserved hypothetical protein from <i>Mycobacterium tuberculosis</i>. Only 12 other proteins share its sequence homology, and none has a known function. This structure indicates the protein may play a role in metabolic pathways. Featured as one of the August 2007 Protein Structure Initiative Structures of the Month. | | Integrated Center for Structure and Function Innovation | 500 | 46,346 | 500 | | | model | | 308 | 129,742 | 308 | | 250 | 25,609 | 250 | Molecular Structures | | 12/10/2007 | | Integrated Center for Structure and Function Innovation | | | Human protein associated with adenylyl cyclase | Active | Illustration | | Model of a human protein associated with the adenylyl cyclase, an enzyme involved in intracellular signaling. | | New York Structural GenomiX Research Consortium, PSI | | | | | | protein structure | | 284 | 54,024 | 308 | | | | | Molecular Structures | | 12/10/2007 | | New York Structural GenomiX Research Consortium, PSI | | | Magnesium transporter protein from E. faecalis | Active | Illustration | | Structure of a magnesium transporter protein from an antibiotic-resistant bacterium (<i>Enterococcus faecalis</i>) found in the human gut. Featured as one of the June 2007 Protein Sructure Initiative Structures of the Month. | | New York Structural GenomiX Consortium | 284 | 84,768 | 308 | | | x-ray crystallography, model | | 284 | 84,768 | 308 | | 284 | 84,768 | 308 | Molecular Structures | | | | New York Structural GenomiX Consortium | | | Cysteine dioxygenase from mouse | Active | Illustration | | Model of the mammalian iron enzyme cysteine dioxygenase from a mouse. | | Center for Eukaryotic Structural Genomics, PSI | 532 | 146,166 | 630 | | | protein structure | | 260 | 103,139 | 308 | | 266 | 31,132 | 315 | Molecular Structures | | 12/10/2007 | | Center for Eukaryotic Structural Genomics, PSI | | | Dimeric association of receptor-type tyrosine-protein phosphatase | Active | Illustration | | Model of the catalytic portion of an enzyme, receptor-type tyrosine-protein phosphatase from humans. The enzyme consists of two identical protein subunits, shown in blue and green. The groups made up of purple and red balls represent phosphate groups, chemical groups that can influence enzyme activity. This phosphatase removes phosphate groups from the enzyme tyrosine kinase, counteracting its effects. | | New York Structural GenomiX Research Consortium, PSI | 2,400 | 667,475 | 2,400 | | | protein structure | | 576 | 105,824 | 576 | | 1,200 | 279,751 | 1,200 | Molecular Structures | | 12/10/2007 | | New York Structural GenomiX Research Consortium, PSI | | | tRNA splicing enzyme endonuclease in humans | Active | Illustration | | An NMR solution structure model of the transfer RNA splicing enzyme endonuclease in humans (subunit Sen15). This represents the first structure of a eukaryotic tRNA splicing endonuclease subunit. | | Center for Eukaryotic Structural Genomics, PSI | 480 | 207,624 | 640 | | | protein structure | | 231 | 95,142 | 308 | | 240 | 28,060 | 320 | Molecular Structures | | 12/10/2007 | | Center for Eukaryotic Structural Genomics, PSI | | | Mandelate racemase from B. subtilis | Active | Illustration | | Model of the mandelate racemase enzyme from <i>Bacillus subtilis</i>, a bacterium commonly found in soil. | | New York Structural GenomiX Research Consortium, PSI | 284 | 109,523 | 308 | | | protein structure | | 284 | 109,687 | 308 | | 284 | 109,687 | 308 | Molecular Structures | | 12/10/2007 | | New York Structural GenomiX Research Consortium, PSI | | | Capillary protein crystallization robot | Active | Photograph | | This ACAPELLA robot for capillary protein crystallization grows protein crystals, freezes them, and centers them without manual intervention. The close-up is a view of one of the dispensers used for dispensing proteins and reagents. | | Structural Genomics of Pathogenic Protozoa Consortium | 1,026 | 3,202,874 | 3,000 | | | equipment, automation | | 246 | 73,013 | 720 | | 513 | 235,979 | 1,500 | Tools and Techniques | | 12/10/2007 | | Structural Genomics of Pathogenic Protozoa Consortium | | | Nicotinic acid phosphoribosyltransferase | Active | Illustration | | Model of the enzyme nicotinic acid phosphoribosyltransferase. This enzyme, from the archaebacterium, <i>Pyrococcus furiosus</i>, is expected to be structurally similar to a clinically important human protein called B-cell colony enhancing factor based on amino acid sequence similarities and structure prediction methods. The structure consists of identical protein subunits, each shown in a different color, arranged in a ring. | | Berkeley Structural Genomics Center, PSI | 284 | 102,311 | 308 | | | protein structure | | 284 | 102,311 | 308 | | 284 | 102,311 | 308 | Molecular Structures | | 12/10/2007 | | Berkeley Structural Genomics Center, PSI | | | Human aspartoacylase | Active | Illustration | | Model of aspartoacylase, a human enzyme involved in brain metabolism. | | Center for Eukaryotic Structural Genomics, PSI | 1,012 | 336,972 | 800 | | | protein structure | | 390 | 114,995 | 308 | | 506 | 48,575 | 400 | Molecular Structures | | 12/10/2007 | | Center for Eukaryotic Structural Genomics, PSI | | | Student overseeing protein cloning robot | Active | Photograph | | Student Christina Hueneke of the Midwest Center for Structural Genomics is overseeing a protein cloning robot. The robot was designed as part of an effort to exponentially increase the output of a traditional wet lab. Part of the center's goal is to cut the average cost of analyzing a protein from $200,000 to $20,000 and to slash the average time from months to days and hours. | | Midwest Center for Structural Genomics | 2,100 | 2,792,290 | 2,100 | | | equipment | | 504 | 67,187 | 504 | | 1,050 | 217,341 | 1,050 | Tools and Techniques | | 12/10/2007 | | Midwest Center for Structural Genomics | | | Section of an electron density map | Active | Illustration | | Electron density maps such as this one are generated from the diffraction patterns of X-rays passing through protein crystals. These maps are then used to generate a model of the protein's structure by fitting the protein's amino acid sequence (yellow) into the observed electron density (blue). | | The Southeast Collaboratory for Structural Genomics | 1,818 | 1,615,868 | 1,458 | | | grid | | 436 | 49,279 | 350 | | 909 | 161,859 | 729 | Molecular Structures | | 12/10/2007 | | The Southeast Collaboratory for Structural Genomics | | | Chromium X-ray source | Active | Photograph | | In the determination of protein structures by X-ray crystallography, this unique soft (l = 2.29Å) X-ray source is used to collect anomalous scattering data from protein crystals containing light atoms such as sulfur, calcium, zinc and phosphorous. These data can be used to image the protein. | | The Southeast Collaboratory for Structural Genomics | 1,527 | 1,853,683 | 2,040 | | | equipment | | 367 | 47,474 | 490 | | 764 | 149,038 | 1,020 | Tools and Techniques | | 12/10/2007 | | The Southeast Collaboratory for Structural Genomics | | | Advanced Photon Source (APS) at Argonne National Lab | Active | Photograph | | The intense X-rays produced by synchrotrons such as the Advanced Photon Source are ideally suited for protein structure determination. Using synchrotron X-rays and advanced computers scientists can determine protein structures at a pace unheard of decades ago. | | Southeast Collaboratory for Structural Genomics | 1,348 | 4,477,442 | 2,311 | | | map | | 324 | 111,420 | 555 | | 674 | 394,789 | 1,156 | Tools and Techniques | | 12/10/2007 | | Southeast Collaboratory for Structural Genomics | | | Cell-free protein synthesizers | Active | Photograph | | Both instruments shown were developed by CellFree Sciences of Yokohama, Japan. The instrument on the left, the GeneDecoder 1000, can generate 384 proteins from their corresponding genes, or gene fragments, overnight. It is used to screen for properties such as level of protein production and degree of solubility. The instrument on the right, the Protemist Protein Synthesizer, is used to generate the larger amounts of protein needed for protein structure determinations. | | Center for Eukaryotic Structural Genomics | 1,776 | 3,547,220 | 2,676 | | | equipment | | 426 | 76,338 | 642 | | 888 | 232,101 | 1,338 | Tools and Techniques | | 12/10/2007 | | Center for Eukaryotic Structural Genomics | | | High-throughput protein structure determination pipeline | Active | Illustration | | This slide shows the technologies that the Joint Center for Structural Genomics developed for going from gene to structure and how the technologies have been integrated into a high-throughput pipeline, including all of the steps from target selection, parallel expression, protein purification, automated crystallization trials, automated crystal screening, structure determination, validation, and publication. | | Joint Center for Structural Genomics | 1,198 | 1,097,567 | 1,794 | | | flow chart, presentation, automation | | 288 | 48,505 | 431 | | 599 | 144,023 | 897 | Tools and Techniques | | 12/10/2007 | | Joint Center for Structural Genomics | | | PSI: from genes to structures | Active | Illustration | | The goal of the Protein Structure Initiative (PSI) is to determine the three-dimensional shapes of a wide range of proteins by solving the structures of representative members of each protein family found in nature. The collection of structures should serve as a valuable resource for biomedical research scientists. | | National Institute of General Medical Sciences | 436 | 101,637 | 582 | | | flow chart, presentation | | 231 | 72,500 | 308 | | 218 | 17,307 | 291 | Molecular Structures | | 12/10/2007 | | National Institute of General Medical Sciences | | | Automated crystal screening system | Active | Photograph | | Automated crystal screening systems such as the one shown here are becoming a common feature at synchrotron and other facilities where high-throughput crystal structure determination is being carried out. These systems rapidly screen samples to identify the best candidates for further study. | | Southeast Collaboratory for Structural Genomics | 1,503 | 3,927,593 | 2,007 | | | equipment, automation | | 361 | 66,930 | 482 | | 752 | 223,006 | 1,004 | Tools and Techniques | | 12/10/2007 | | Southeast Collaboratory for Structural Genomics | | | Map of protein structures 02 | Active | Illustration | | A global "map of the protein structure universe" indicating the positions of specific proteins. The preponderance of small, less-structured proteins near the origin, with the more highly structured, large proteins towards the ends of the axes, may suggest the evolution of protein structures. | | Berkeley Structural Genomics Center, PSI | 1,818 | 1,545,071 | 2,000 | | | model | | 436 | 83,623 | 480 | | 909 | 249,358 | 1,000 | Molecular Structures | | 12/10/2007 | | Berkeley Structural Genomics Center, PSI | | | Map of protein structures 01 | Active | Illustration | | A global "map of the protein structure universe." The Berkeley Structural Genomics Center has developed a method to visualize the vast universe of protein structures in which proteins of similar structure are located close together and those of different structures far away in the space. This map, constructed using about 500 of the most common protein folds, reveals a highly non-uniform distribution, and shows segregation between four elongated regions corresponding to four different protein classes (shown in four different colors). Such a representation reveals a high-level of organization of the protein structure universe. | | Berkeley Structural Genomics Center, PSI | 1,768 | 452,968 | 1,768 | | | model | | 424 | 27,681 | 424 | | 884 | 79,024 | 884 | Molecular Structures | | 12/10/2007 | | Berkeley Structural Genomics Center, PSI | | | Protein purification robot in action 01 | Active | Photograph | | A robot is transferring 96 purification columns to a vacuum manifold for subsequent purification procedures. | | The Northeast Collaboratory for Structural Genomics | 1,450 | 1,886,933 | 1,938 | | | automation, equipment | | 348 | 42,844 | 465 | | 725 | 138,473 | 969 | Tools and Techniques | | 12/10/2007 | | The Northeast Collaboratory for Structural Genomics | | | Mounting of protein crystals | Active | Photograph | | Automated methods using micromachined silicon are used at the Northeast Collaboratory for Structural Genomics to mount protein crystals for X-ray crystallography. | | The Northeast Collaboratory for Structural Genomics | 1,600 | 861,195 | 2,284 | | | protein structure | | 384 | 35,285 | 548 | | 800 | 100,440 | 1,142 | Tools and Techniques | | 12/10/2007 | | The Northeast Collaboratory for Structural Genomics | | | Wreath-shaped protein from X. campestris | Active | Illustration | | Crystal structure of a protein with unknown function from <i>Xanthomonas campestris</i>, a plant pathogen. Eight copies of the protein crystallized to form a ring. Chosen as the December 2007 Protein Structure Initiative Structure of the Month. | | Ken Schwinn and Sonia Espejon-Reynes, New York SGX Research Center for Structural Genomics | 750 | 119,181 | 1,148 | | | model | | 188 | 28,274 | 287 | | 375 | 45,856 | 574 | Molecular Structures | | 12/10/2007 | | Ken Schwinn and Sonia Espejon-Reynes, New York SGX Research Center for Structural Genomics | | | Protein from Methanobacterium thermoautotrophicam | Active | Illustration | | A knotted protein from an archaebacterium called <i>Methanobacterium thermoautotrophicam</i>. This organism breaks down waste products and produces methane gas. Protein folding theory previously held that forming a knot was beyond the ability of a protein, but this structure, determined at Argonne's Structural Biology Center, proves differently. Researchers theorize that this knot stabilizes the amino acid subunits of the protein. | | Midwest Center For Structural Genomics, PSI | 1,727 | 353,604 | 2,010 | | | model | | 414 | 45,734 | 482 | | 864 | 126,794 | 1,005 | Molecular Structures | | 12/10/2007 | | Midwest Center For Structural Genomics, PSI | | | Oligoendopeptidase F from B. stearothermophilus | Active | Illustration | | Crystal structure of oligoendopeptidase F, a protein slicing enzyme from <i>Bacillus stearothermophilus</i>, a bacterium that can cause food products to spoil. The crystal was formed using a microfluidic capillary, a device that enables scientists to independently control the parameters for protein crystal nucleation and growth. Featured as one of the July 2007 Protein Structure Initiative Structures of the Month. | | Accelerated Technologies Center for Gene to 3D Structure/Midwest Center for Structural Genomics | 783 | 546,749 | 602 | | | model | | 401 | 175,253 | 308 | | 392 | 46,532 | 301 | Molecular Structures | | 12/10/2007 | | Accelerated Technologies Center for Gene to 3D Structure/Midwest Center for Structural Genomics | | | NMR spectrometer | Active | Photograph | | This photo shows a Varian Unity Inova 900 MHz, 21.1 T standard bore magnet Nuclear Magnetic Resonnance (NMR) spectrometer. NMR spectroscopy provides data used to determine the structures of proteins in solution, rather than in crystal form, as in X-ray crystallography. The technique is limited to smaller proteins or protein fragments in a high throughput approach. | | Center for Eukaryotic Structural Genomics | 1,808 | 2,367,737 | 3,008 | | | equipment | | 434 | 99,591 | 722 | | 904 | 310,719 | 1,504 | Tools and Techniques | | 12/10/2007 | | Center for Eukaryotic Structural Genomics | | | Protein purification facility | Active | Photograph | | The Center for Eukaryotic Structural Genomics protein purification facility is responsible for purifying all recombinant proteins produced by the center. The facility performs several purification steps, monitors the quality of the processes, and stores information about the biochemical properties of the purified proteins in the facility database. | | Center for Eukaryotic Structural Genomics | 1,624 | 1,912,847 | 2,824 | | | laboratory, lab | | 390 | 107,289 | 678 | | 812 | 333,051 | 1,412 | Tools and Techniques | | 12/10/2007 | | Center for Eukaryotic Structural Genomics | | | Protein purification robot | Active | Photograph | | Irina Dementieva, a biochemist, and Youngchang Kim, a biophysicist and crystallographer, work with the first robot of its type in the U.S. to automate protein purification. The robot, which is housed in a refrigerator, is an integral part of the Midwest Structural Genomics Center's plan to automate the protein crystallography process. | | Midwest Center for Structural Genomics | 2,061 | 972,272 | 1,806 | | | automation | | 494 | 61,870 | 433 | | 1,031 | 203,901 | 903 | Tools and Techniques | | 12/10/2007 | | Midwest Center for Structural Genomics | | | Protein involved in cell division from Mycoplasma pneumoniae | Active | Illustration | | Model of a protein involved in cell division from <i>Mycoplasma pneumoniae</i>. This model, based on X-ray crystallography, revealed a structural domain not seen before. The protein is thought to be involved in cell division and cell wall biosynthesis. | | Berkeley Structural Genomics Center, PSI | 284 | 87,463 | 308 | | | protein structure | | 284 | 87,463 | 308 | | 284 | 87,463 | 308 | Molecular Structures | | 12/10/2007 | | Berkeley Structural Genomics Center, PSI | | | Secreted protein from Mycobacteria | Active | Illustration | | Model of a major secreted protein of unknown function, which is only found in mycobacteria, the class of bacteria that causes tuberculosis. Based on structural similarity, this protein may be involved in host-bacterial interactions. | | Mycobacterium Tuberculosis Center, PSI | 1,104 | 422,456 | 900 | | | protein structure | | 378 | 96,177 | 308 | | 552 | 46,667 | 450 | Molecular Structures | | 12/10/2007 | | Mycobacterium Tuberculosis Center, PSI | | | PanB from M. tuberculosis (1) | Active | Illustration | | Model of an enzyme, PanB, from <i>Mycobacterium tuberculosis</i>, the bacterium that causes most cases of tuberculosis. This enzyme is an attractive drug target. | | Mycobacterium Tuberculosis Center, PSI | 1,425 | 1,255,712 | 1,385 | | | protein structure, drug development | | 342 | 53,523 | 332 | | 713 | 167,371 | 693 | Molecular Structures | | 12/10/2007 | | Mycobacterium Tuberculosis Center, PSI | | | Most abundant protein in M. tuberculosis | Active | Illustration | | Model of a protein, antigen 85B, that is the most abundant protein exported by <i>Mycobacterium tuberculosis</i>, which causes most cases of tuberculosis. Antigen 85B is involved in building the bacterial cell wall and is an attractive drug target. Based on its structure, scientists have suggested a new class of antituberculous drugs. | | Mycobacterium Tuberculosis Center, PSI | 887 | 529,328 | 926 | | | drug development, model, protein structure | | 295 | 117,934 | 308 | | 444 | 56,608 | 463 | Molecular Structures | | 12/10/2007 | | Mycobacterium Tuberculosis Center, PSI | | | PanB from M. tuberculosis (2) | Active | Illustration | | Model of an enzyme, PanB, from <i>Mycobacterium tuberculosis</i>, the bacterium that causes most cases of tuberculosis. This enzyme is an attractive drug target. | | Mycobacterium Tuberculosis Center, PSI-1 | 943 | 595,480 | 900 | | | protein structure, drug development | | 323 | 134,212 | 308 | | 472 | 65,723 | 450 | Molecular Structures | | 12/10/2007 | | Mycobacterium Tuberculosis Center, PSI-1 | | | dUTP pyrophosphatase from M. tuberculosis | Active | Illustration | | Model of an enzyme, dUTP pyrophosphatase, from <i>Mycobacterium tuberculosis</i>. Drugs targeted to this enzyme might inhibit the replication of the bacterium that causes most cases of tuberculosis. | | Mycobacterium Tuberculosis Center, PSI | 897 | 559,222 | 944 | | | protein structure, drug development | | 293 | 122,059 | 308 | | 449 | 62,978 | 472 | Molecular Structures | | 12/10/2007 | | Mycobacterium Tuberculosis Center, PSI | | | PanC from M. tuberculosis | Active | Illustration | | Model of an enzyme, PanC, that is involved in the last step of vitamin B5 biosynthesis in <i>Mycobacterium tuberculosis</i>. PanC is essential for the growth of <i>M. tuberculosis</i>, which causes most cases of tuberculosis, and is therefore a potential drug target. | | Mycobacterium Tuberculosis Center, PSI | 878 | 766,100 | 1,539 | | | protein structure, drug development | | 211 | 37,954 | 369 | | 439 | 107,886 | 770 | Molecular Structures | | 12/10/2007 | | Mycobacterium Tuberculosis Center, PSI | | | Scientists display X-ray diffraction pattern obtained with split X-ray beamline | Active | Photograph | | Scientists from Argonne National Laboratory's Advanced Photon Source (APS) display the first X-ray diffraction pattern obtained from a protein crystal using a split X-ray beam, the first of its kind at APS. The scientists shown are (from left to right): Oleg Makarov, Ruslan Sanishvili, Robert Fischetti (project manager), Sergey Stepanov, and Ward Smith. | | GM/CA Collaborative Access Team | 1,125 | 309,493 | 1,500 | | | researcher | | 270 | 32,477 | 360 | | 563 | 103,539 | 750 | Tools and Techniques | | 12/10/2007 | | GM/CA Collaborative Access Team | | | Heat shock protein complex from Methanococcus jannaschii | Active | Illustration | | Model based on X-ray crystallography of the structure of a small heat shock protein complex from the bacteria, <i>Methanococcus jannaschii</i>. <i>Methanococcus jannaschii</i> is an organism that lives at near boiling temperature, and this protein complex helps it cope with the stress of high temperature. Similar complexes are produced in human cells when they are "stressed" by events such as burns, heart attacks, or strokes. The complexes help cells recover from the stressful event. | | Berkeley Structural Genomics Center, PSI-1 | 752 | 351,025 | 1,008 | | | protein structure | | 181 | 10,767 | 242 | | 376 | 33,074 | 504 | Molecular Structures | | 12/10/2007 | | Berkeley Structural Genomics Center, PSI-1 | | | Sortase b from B. anthracis | Active | Illustration | | Structure of sortase b from the bacterium <i>B. anthracis</i>, which causes anthrax. Sortase b is an enzyme used to rob red blood cells of iron, which the bacteria need to survive. | | Midwest Center for Structural Genomics, PSI | 1,082 | 581,459 | 1,412 | | | protein structure | | 260 | 30,345 | 339 | | 541 | 76,699 | 706 | Molecular Structures | | 12/10/2007 | | Midwest Center for Structural Genomics, PSI | | | Thymidylate synthase complementing protein from Thermotoga maritime | Active | Illustration | | A model of thymidylate synthase complementing protein from <i>Thermotoga maritime</i>. | | Joint Center for Structural Genomics, PSI | 284 | 65,448 | 308 | | | protein structure | | 284 | 65,448 | 308 | | 284 | 65,448 | 308 | Molecular Structures | | 12/10/2007 | | Joint Center for Structural Genomics, PSI | | | Ubiquitin-fold modifier 1 from C. elegans | Active | Illustration | | Solution NMR structure of protein target WR41 (left) from <i>C. elegans</i>. Noting the unanticipated structural similarity to the ubiquitin protein (Ub) found in all eukaryotic cells, researchers discovered that WR41 is a Ub-like modifier, ubiquitin-fold modifier 1 (Ufm1), on a newly uncovered ubiquitin-like pathway. Subsequently, the PSI group also determined the three-dimensional structure of protein target HR41 (right) from humans, the E2 ligase for Ufm1, using both NMR and X-ray crystallography. | | Northeast Structural Genomics Consortium | 268 | 121,090 | 546 | | | model | | 151 | 64,284 | 308 | | 134 | 13,649 | 273 | Molecular Structures | | 12/10/2007 | | Northeast Structural Genomics Consortium | | | Hen egg lysozyme (1) | Active | Photograph | | Crystals of hen egg lysozyme protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 301,453 | 1,200 | | Alex McPherson, CBB | Xray, 3D, enzyme | | 200 | 50,039 | 300 | | 400 | 140,953 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Sheep hemoglobin crystal | Active | Photograph | | A crystal of sheep hemoglobin protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 348,883 | 1,200 | | Alex McPherson, CBB | 3D | | 200 | 50,567 | 300 | | 400 | 132,848 | 600 | Molecular Structures | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Bovine milk alpha-lactalbumin (1) | Active | Photograph | | A crystal of bovine milk alpha-lactalbumin protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 210,996 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 42,551 | 300 | | 400 | 108,156 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Fungal lipase (1) | Active | Photograph | | Crystals of fungal lipase protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 130,925 | 1,200 | | Alex McPherson, CBB | 3D | | 200 | 35,522 | 300 | | 400 | 77,897 | 600 | Molecular Structures | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Bacterial alpha amylase | Active | Photograph | | A crystal of bacterial alpha amylase protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 233,080 | 1,200 | protein structure | Alex McPherson, CBB | Xray, 3D | | 200 | 36,198 | 300 | | 400 | 110,447 | 600 | Molecular Structures, Tools and Techniques | | | | Alex McPherson, University of California, Irvine | | | RNase A (1) | Active | Photograph | | A crystal of RNase A protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 254,386 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 38,364 | 300 | | 400 | 112,233 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Bence Jones protein MLE | Active | Photograph | | A crystal of Bence Jones protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 204,953 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 44,449 | 300 | | 400 | 106,009 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Pig trypsin (1) | Active | Photograph | | A crystal of porcine trypsin protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 196,123 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 39,146 | 300 | | 400 | 101,086 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Pig trypsin crystal | Active | Photograph | | A crystal of pig trypsin protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 215,551 | 1,200 | | lex McPherson, CBB | Xray, 3D | | 200 | 36,508 | 300 | | 400 | 100,476 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | RNase A (2) | Active | Photograph | | A crystal of RNase A protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 506,416 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 65,602 | 300 | | 400 | 182,441 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Hen egg lysozyme (2) | Active | Photograph | | A crystal of hen egg lysozyme protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 295,696 | 1,200 | | Alex McPherson, CBB | Xray, 3D, enzyme | | 200 | 42,691 | 300 | | 400 | 132,912 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Bovine milk alpha-lactalbumin (2) | Active | Photograph | | Crystals of bovine milk alpha-lactalbumin protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 124,595 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 33,165 | 300 | | 400 | 74,056 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Rabbit GPDA | Active | Photograph | | A crystal of rabbit GPDA protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 178,408 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 43,033 | 300 | | 400 | 99,609 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Pig alpha amylase | Active | Photograph | | Crystals of porcine alpha amylase protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 158,695 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 42,340 | 300 | | 400 | 92,132 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Pig trypsin (2) | Active | Photograph | | A crystal of porcine trypsin protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 135,335 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 32,178 | 300 | | 400 | 74,014 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Fly by night | Active | Photograph | | This fruit fly expresses green fluorescent protein (GFP) in the same pattern as the period gene, a gene that regulates circadian rhythm and is expressed in all sensory neurons on the surface of the fly. | | Jay Hirsh, University of Virginia | 1,020 | 47,197 | 1,020 | jh6u@virginia.edu - "Its only use has been on my limited edition & now defunct FlybyNight Beer." | Jay Hirsh, GDB | fluorescence | | 255 | 11,170 | 255 | | 510 | 32,309 | 510 | Genes, Molecular Structures | | 12/13/2007 | | Jay Hirsh, University of Virginia | | | DNase | Active | Photograph | | Crystals of DNase protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 255,443 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 48,478 | 300 | | 400 | 127,631 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Bacterial glucose isomerase | Active | Photograph | | A crystal of bacterial glucose isomerase protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 280,282 | 1,200 | | Alex McPherson, CBB | Xray, 3D, bacteria | | 200 | 41,662 | 300 | | 400 | 133,228 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Pig trypsin (3) | Active | Photograph | | Crystals of porcine trypsin protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 192,234 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 51,125 | 300 | | 400 | 109,333 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Jack bean concanavalin A | Active | Photograph | | Crystals of jack bean concanavalin A protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 379,645 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 64,713 | 300 | | 400 | 171,448 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Fungal lipase (2) | Active | Photograph | | Crystals of fungal lipase protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 116,228 | 1,200 | | Alex McPherson, CBB | Xray, 3D, fungi | | 200 | 30,638 | 300 | | 400 | 67,866 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Bovine trypsin | Active | Photograph | | A crystal of bovine trypsin protein created for X-ray crystallography, which can reveal detailed, three-dimensional protein structures. | | Alex McPherson, University of California, Irvine | 800 | 220,014 | 1,200 | | Alex McPherson, CBB | Xray, 3D | | 200 | 45,876 | 300 | | 400 | 111,482 | 600 | Molecular Structures, Tools and Techniques | | 12/13/2007 | | Alex McPherson, University of California, Irvine | | | Genetic imprinting in Arabidopsis | Active | Photograph | | This delicate, birdlike projection is an immature seed of the <em>Arabidopsis</em> plant. The part in blue shows the cell that gives rise to the endosperm, the tissue that nourishes the embryo. The cell is expressing only the maternal copy of a gene called MEDEA. This phenomenon, in which the activity of a gene can depend on the parent that contributed it, is called genetic imprinting. In <em>Arabidopsis</em>, the maternal copy of MEDEA makes a protein that keeps the paternal copy silent and reduces the size of the endosperm. In flowering plants and mammals, this sort of genetic imprinting is thought to be a way for the mother to protect herself by limiting the resources she gives to any one embryo. Featured in the May 16, 2006, issue of <em>Biomedical Beat</em>. | | Robert Fischer, University of California, Berkeley | 3,281 | 1,791,876 | 2,513 | | | DNA | | 787 | 159,407 | 603 | | 1,641 | 644,716 | 1,257 | Cells, Genes | | 12/14/2007 | | Robert Fischer, University of California, Berkeley | | | Mapping brain differences | Active | Illustration | | This image of the human brain uses colors and shapes to show neurological differences between two people. The blurred front portion of the brain, associated with complex thought, varies most between the individuals. The blue ovals mark areas of basic function that vary relatively little. Visualizations like this one are part of a project to map complex and dynamic information about the human brain, including genes, enzymes, disease states, and anatomy. The brain maps represent collaborations between neuroscientists and experts in math, statistics, computer science, bioinformatics, imaging, and nanotechnology. | | Arthur Toga, University of California, Los Angeles | 735 | 602,586 | 1,083 | | | | | 176 | 20,947 | 260 | | 368 | 67,913 | 542 | Cells, Tools and Techniques | | | | Arthur Toga, University of California, Los Angeles | | | Protein map | Active | Illustration | | Network diagram showing a map of protein-protein interactions in a yeast (<i>Saccharomyces cerevisiae</i>) cell. This cluster includes 78 percent of the proteins in the yeast proteome. The color of a node represents the phenotypic effect of removing the corresponding protein (red, lethal; green, nonlethal; orange, slow growth; yellow, unknown). | | Hawoong Jeong, KAIST, Korea | 753 | 233,675 | 753 | 11/18/07 hawoong@gmail.com to KJ: It's good to know that you've interest in our work. I'm more than happy to allow to use our image. Also I attached EPS format which has better resolution for use. If you have any further questions, please feel free to email me. Version of image used in NATURE | VOL 411 | 3 MAY 2001 pp 41-42 | Albert-László Barabási | structure | | 181 | 19,470 | 181 | | 377 | 74,878 | 377 | Cells, Molecular Structures | | 1/4/2008 | In compu approaches to biol systems seminar poster 2003 (not created by NIGMS) | Hawoong Jeong, KAIST, Korea | | | Influenza virus attaches to host membrane | Active | Illustration | | | | National Institute of General Medical Sciences | 2,406 | 18,214,152 | 1,890 | | Mavis Agbandje-McKenna, University of Florida | | | 602 | 77,187 | 473 | | 1,203 | 189,842 | 945 | Cells | | 1/11/2008 | Produced by Crabtree + Company for March 2006, Findings "Viral Voyages" | Crabtree + Company | | | Zinc finger | Active | Illustration | | The structure of a gene-regulating zinc finger protein bound to DNA. | | Jeremy M. Berg, National Institute of General Medical Sciences | 2,742 | 608,534 | 954 | | | Structure | | 658 | 39,402 | 229 | | 1,371 | 105,403 | 477 | Genes, Molecular Structures | | 1/16/2008 | Strategic Plan (2008) | Jeremy M. Berg, National Institute of General Medical Sciences | | | Colorful cells | Active | Photograph | | Actin (purple), microtubules (yellow), and nuclei (green) are labeled in these cells by immunofluorescence. This image won first place in the Nikon 2003 Small World photo competition. | | Torsten Wittmann, Scripps Research Institute | 1,024 | 737,589 | 1,200 | Wittmann allowed public use of low-res version (of Wittmann 003_1.tif) | Clare Waterman-Storer | | | 256 | 90,047 | 300 | | 512 | 248,048 | 600 | Cells | | 2/8/2008 | ITC and others | Torsten Wittmann, Scripps Research Institute | | | Fruit fly embryo | Active | Photograph | | Cells in an early-stage fruit fly embryo, showing the DIAP1 protein (pink), an inhibitor of apoptosis. | | Hyung Don Ryoo and Hermann Steller, Rockefeller University | 2,133 | 2,796,662 | 2,133 | KS obtained unlimited permission from Steller, 2/08 | | Structure | | 512 | 143,138 | 512 | | 1,067 | 414,264 | 1,067 | Cells, Molecular Structures | | 2/27/2008 | | Hermann Steller, Rockefeller University | | | Highlighted cells | Active | Photograph | | The cytoskeleton (green) and DNA (purple) are highlighed in these cells by immunofluorescence. | | Torsten Wittmann, Scripps Research Institute | 1,024 | 982,393 | 1,200 | Wittmann allowed public use of lower-res version of Wittmann p672 135.tif | Clare Waterman-Storer, CBB | Fluorescent | | 256 | 97,338 | 300 | | 512 | 290,668 | 600 | Cells, Genes | | 2/8/2008 | ITC and others | Torsten Wittmann, Scripps Research Institute | | | ARTS triggers apoptosis | Active | Photograph | | | | Sarit Larisch and Hermann Steller, Rockefeller University | 450 | 82,616 | 450 | KS obtained unlimited permission from Steller 2/08. | | Structure | | 108 | 4,756 | 108 | | 225 | 14,255 | 225 | Cells, Molecular Structures | | 2/27/2008 | | Hermann Steller, Rockefeller University | | | Fruit fly retina 02 | Active | Photograph | | Section of a fruit fly retina showing the light-sensing molecules rhodopsin-5 (blue) and rhodopsin-6 (red). | | Bertrand Mollereau and Hermann Steller, Rockefeller University | 366 | 93,346 | 450 | KS obtained unlimited permission from Steller, 2/08 | | | | 88 | 4,641 | 108 | | 183 | 13,376 | 225 | Cells | | 2/27/2008 | | Hermann Steller, Rockefeller University | | | Developing fruit fly nerve cord | Active | Photograph | | The glial cells (black dots) and nerve cells (brown bands) in this developing fruit fly nerve cord formed normally despite the absence of the SPITZ protein, which blocks their impending suicide. The HID protein, which triggers suicide, is also lacking in this embryo. | | Andreas Bergmann and Hermann Steller, Rockefeller University | 262 | 48,972 | 491 | KS obtained unlimited permission from Steller, 2/08. | | | | 63 | 4,015 | 118 | | 131 | 11,413 | 246 | Cells | | 2/27/2008 | | Hermann Steller, Rockefeller University | | | Hydra 03 | Active | Photograph | | <i>Hydra magnipapillata</i> is an invertebrate animal used as a model organism to study developmental questions, for example the formation of the body axis. | | Hiroshi Shimizu | 3,872 | 1,390,300 | 2,592 | Contact Shimizu: bubuchin2006@yahoo.co.jp. Shimizu is a faculty member. Alison obtained image from Rob Steele, University of California, Irvine. From: bubuchin2006@yahoo.co.jp [ mailto:bubuchin2006@yahoo.co.jp] Sent: Saturday, March 08, 2008 8:11 PM To: Davis, Alison (NIH/NIGMS) [C] Subject: Re: FW: FW: higher resolution Hydra pictures Dear Alison, Thanks for your contact. I sent the images for that purpose. No problem and my pleasure. Hiroshi --- "Davis, Alison (NIH/NIGMS) [C]" wrote: > Dr. Shimizu: See below; Dr. Rob Steele sent me some images of yours > for use on a Genetic Resources web site. Would it be okay for NIGMS > (part of NIH) to place your Hydra images in its public image gallery? > We would credit you, of course. Please let me know. > > Thank you, > > Alison Davis > National Institute of General Medical Sciences, NIH | | development | | 929 | 54,871 | 622 | | 1,936 | 213,779 | 1,296 | Cells | | 3/21/2008 | | Hiroshi Shimizu, National Institute of Genetics in Mishima, Japan | | | Hydra 01 | Active | Photograph | | <i>Hydra magnipapillata</i> is an invertebrate animal used as a model organism to study developmental questions, for example the formation of the body axis. | | Hiroshi Shimizu | 3,872 | 1,320,355 | 2,592 | Contact Shimizu: bubuchin2006@yahoo.co.jp. Shimizu is a faculty member. Alison obtained image from Rob Steele, University of California, Irvine. From: bubuchin2006@yahoo.co.jp [ mailto:bubuchin2006@yahoo.co.jp] Sent: Saturday, March 08, 2008 8:11 PM To: Davis, Alison (NIH/NIGMS) [C] Subject: Re: FW: FW: higher resolution Hydra pictures Dear Alison, Thanks for your contact. I sent the images for that purpose. No problem and my pleasure. Hiroshi --- "Davis, Alison (NIH/NIGMS) [C]" < DAVISA@NIGMS.NIH.GOV> wrote: > Dr. Shimizu: See below; Dr. Rob Steele sent me some images of yours > for use on a Genetic Resources web site. Would it be okay for NIGMS > (part of NIH) to place your Hydra images in its public image gallery? > We would credit you, of course. Please let me know. > > Thank you, > > Alison Davis > National Institute of General Medical Sciences, NIH | | development | | 929 | 49,742 | 622 | | 1,936 | 196,167 | 1,296 | Cells | | 3/21/2008 | | Hiroshi Shimizu, National Institute of Genetics in Mishima, Japan | | | Hydra 04 | Active | Photograph | | <i>Hydra magnipapillata</i> is an invertebrate animal used as a model organism to study developmental questions, for example the formation of the body axis. | | Hiroshi Shimizu | 3,872 | 1,375,050 | 2,592 | Contact Shimizu: bubuchin2006@yahoo.co.jp. Shimizu is a faculty member. Alison obtained image from Rob Steele, University of California, Irvine. From: bubuchin2006@yahoo.co.jp [ mailto:bubuchin2006@yahoo.co.jp] Sent: Saturday, March 08, 2008 8:11 PM To: Davis, Alison (NIH/NIGMS) [C] Subject: Re: FW: FW: higher resolution Hydra pictures Dear Alison, Thanks for your contact. I sent the images for that purpose. No problem and my pleasure. Hiroshi --- "Davis, Alison (NIH/NIGMS) [C]" wrote: > Dr. Shimizu: See below; Dr. Rob Steele sent me some images of yours > for use on a Genetic Resources web site. Would it be okay for NIGMS > (part of NIH) to place your Hydra images in its public image gallery? > We would credit you, of course. Please let me know. > > Thank you, > > Alison Davis > National Institute of General Medical Sciences, NIH | | development | | 929 | 51,402 | 622 | | 1,936 | 205,412 | 1,296 | Cells | | 3/21/2008 | | Hiroshi Shimizu, National Institute of Genetics in Mishima, Japan | | | Hydra 02 | Active | Photograph | | <i>Hydra magnipapillata</i> is an invertebrate animal used as a model organism to study developmental questions, for example the formation of the body axis. | | Hiroshi Shimizu | 3,872 | 1,581,962 | 2,592 | Contact Shimizu: bubuchin2006@yahoo.co.jp. Shimizu is a faculty member. Alison obtained image from Rob Steele, University of California, Irvine. From: bubuchin2006@yahoo.co.jp [ mailto:bubuchin2006@yahoo.co.jp] Sent: Saturday, March 08, 2008 8:11 PM To: Davis, Alison (NIH/NIGMS) [C] Subject: Re: FW: FW: higher resolution Hydra pictures Dear Alison, Thanks for your contact. I sent the images for that purpose. No problem and my pleasure. Hiroshi --- "Davis, Alison (NIH/NIGMS) [C]" wrote: > Dr. Shimizu: See below; Dr. Rob Steele sent me some images of yours > for use on a Genetic Resources web site. Would it be okay for NIGMS > (part of NIH) to place your Hydra images in its public image gallery? > We would credit you, of course. Please let me know. > > Thank you, > > Alison Davis > National Institute of General Medical Sciences, NIH | | development | | 929 | 65,598 | 622 | | 1,936 | 250,784 | 1,296 | Cells | | 3/21/2008 | | Hiroshi Shimizu, National Institute of Genetics in Mishima, Japan | | | Fruit fly sperm cells | Active | Photograph | | Developing fruit fly spermatids require caspase activity (green) for the elimination of unwanted organelles and cytoplasm via apoptosis. | | Eli Arama and Hermann Steller, Rockefeller University | 4,000 | 2,779,653 | 3,200 | KS obtained unlimited permission from Steller, 2/08. | | | | 960 | 101,260 | 768 | | 2,000 | 297,991 | 1,600 | Cells | | 2/27/2008 | | Hermann Steller, Rockefeller University | | | Fruit fly retina 01 | Active | Photograph | | Image showing rhabdomeres (red), the light-sensitive structures in the fruit fly retina, and rhodopsin-4 (blue), a light-sensing molecule. | | Bertrand Mollereau and Hermann Steller, Rockefeller University | 310 | 107,640 | 369 | KS obtained unlimited permission 2/08 | | | | 75 | 5,442 | 89 | | 155 | 16,217 | 185 | Cells | | 2/27/2008 | | Hermann Steller, Rockefeller University | | | Hydra 05 | Active | Photograph | | <i>Hydra magnipapillata</i> is an invertebrate animal used as a model organism to study developmental questions, for example the formation of the body axis. | | Hiroshi Shimizu | 2,592 | 425,090 | 3,872 | Contact Shimizu: bubuchin2006@yahoo.co.jp. Shimizu is a faculty member. Alison obtained image from Rob Steele, University of California, Irvine. From: bubuchin2006@yahoo.co.jp [ mailto:bubuchin2006@yahoo.co.jp] Sent: Saturday, March 08, 2008 8:11 PM To: Davis, Alison (NIH/NIGMS) [C] Subject: Re: FW: FW: higher resolution Hydra pictures Dear Alison, Thanks for your contact. I sent the images for that purpose. No problem and my pleasure. Hiroshi --- "Davis, Alison (NIH/NIGMS) [C]" wrote: > Dr. Shimizu: See below; Dr. Rob Steele sent me some images of yours > for use on a Genetic Resources web site. Would it be okay for NIGMS > (part of NIH) to place your Hydra images in its public image gallery? > We would credit you, of course. Please let me know. > > Thank you, > > Alison Davis > National Institute of General Medical Sciences, NIH | | development | | 622 | 33,116 | 929 | | 1,296 | 100,733 | 1,936 | Cells | | 3/21/2008 | | Hiroshi Shimizu, National Institute of Genetics in Mishima, Japan | | | Hydra 06 | Active | Photograph | | <i>Hydra magnipapillata</i> is an invertebrate animal used as a model organism to study developmental questions, for example the formation of the body axis. | | Hiroshi Shimizu | 2,592 | 601,758 | 3,872 | Contact Shimizu: bubuchin2006@yahoo.co.jp. Shimizu is a faculty member. Alison obtained image from Rob Steele, University of California, Irvine. From: bubuchin2006@yahoo.co.jp [ mailto:bubuchin2006@yahoo.co.jp] Sent: Saturday, March 08, 2008 8:11 PM To: Davis, Alison (NIH/NIGMS) [C] Subject: Re: FW: FW: higher resolution Hydra pictures Dear Alison, Thanks for your contact. I sent the images for that purpose. No problem and my pleasure. Hiroshi --- "Davis, Alison (NIH/NIGMS) [C]" wrote: > Dr. Shimizu: See below; Dr. Rob Steele sent me some images of yours > for use on a Genetic Resources web site. Would it be okay for NIGMS > (part of NIH) to place your Hydra images in its public image gallery? > We would credit you, of course. Please let me know. > > Thank you, > > Alison Davis > National Institute of General Medical Sciences, NIH | | development | | 622 | 35,450 | 929 | | 1,296 | 103,902 | 1,936 | Cells | | 3/21/2008 | | Hiroshi Shimizu, National Institute of Genetics in Mishima, Japan | | | Mapping human genetic variation | Active | Illustration | | This map paints a colorful portrait of human genetic variation around the world. Researchers analyzed the DNA of 485 people and tinted the genetic types in different colors to produce one of the most detailed maps of its kind ever made. The map shows that genetic variation decreases with increasing distance from Africa, which supports the idea that humans originated in Africa, spread to the Middle East, then to Asia and Europe, and finally to the Americas. The data also offers a rich resource that scientists could use to pinpoint the genetic basis of diseases prevalent in diverse populations. Featured in the March 19, 2008, issue of <em>Biomedical Beat</em>. | | Noah Rosenberg and Martin Soave, University of Michigan | 3,000 | 1,008,173 | 2,333 | | Noah Rosenberg, University of Michigan | DNA | | 720 | 124,975 | 560 | | 1,501 | 332,014 | 1,167 | Genes | | 3/21/2008 | BB 3/08 | Noah Rosenberg and Martin Soave, University of Michigan | | | Seeing signaling protein activation in cells 01 | Active | Photograph | | Cdc42, a member of the Rho family of small guanosine triphosphatase (GTPase) proteins, regulates multiple cell functions, including motility, proliferation, apoptosis, and cell morphology. In order to fulfill these diverse roles, the timing and location of Cdc42 activation must be tightly controlled. Klaus Hahn and his research group use special dyes designed to report protein conformational changes and interactions, here in living neutrophil cells. Warmer colors in this image indicate higher levels of activation. Cdc42 looks to be activated at cell protrusions. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2452">2452</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2453">2453</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2454">2454</a>. | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | 840 | 236,502 | 784 | | Klaus Hahn, CBB | | | 201 | 11,640 | 188 | | 420 | 39,247 | 392 | Cells, Molecular Structures | | 4/18/2008 | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | | | Blood clots show their flex | Active | Video | | Blood clots stop bleeding, but they also can cause heart attacks and strokes. A team led by computational biophysicist Klaus Schulten of the University of Illinois at Urbana-Champaign has revealed how a blood protein can give clots their lifesaving and life-threatening abilities. The researchers combined experimental and computational methods to animate fibrinogen, a protein that forms the elastic fibers that enable clots to withstand the force of blood pressure. This simulation shows that the protein, through a series of events, stretches up to three times its length. Adjusting this elasticity could improve how we manage healthful and harmful clots. NIH's National Center for Research Resources also supported this work. Featured in the March 19, 2008, issue of <em>Biomedical Beat</em>. | | Eric Lee, University of Illinois at Urbana-Champaign | | 1,278,568 | | | Klaus Schulten, University of Illinois at Urbana-Champaign | Structure | | 284 | 32,856 | 308 | | | | | Molecular Structures | | 3/26/2008 | BB 3/08 | Eric Lee, University of Illinois at Urbana-Champaign | | | Seeing signaling protein activation in cells 03 | Active | Photograph | | Cdc42, a member of the Rho family of small guanosine triphosphatase (GTPase) proteins, regulates multiple cell functions, including motility, proliferation, apoptosis, and cell morphology. In order to fulfill these diverse roles, the timing and location of Cdc42 activation must be tightly controlled. Klaus Hahn and his research group use special dyes designed to report protein conformational changes and interactions, here in living neutrophil cells. Warmer colors in this image indicate higher levels of activation. Cdc42 looks to be activated at cell protrusions. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2451">2451</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2452">2452</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2454">2454</a>. | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | 1,084 | 574,421 | 1,739 | | Klaus Hahn, CBB | | | 260 | 32,386 | 417 | | 542 | 114,774 | 870 | Cells, Molecular Structures | | 4/18/2008 | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | | | Seeing signaling protein activation in cells 02 | Active | Photograph | | Cdc42, a member of the Rho family of small guanosine triphosphatase (GTPase) proteins, regulates multiple cell functions, including motility, proliferation, apoptosis, and cell morphology. In order to fulfill these diverse roles, the timing and location of Cdc42 activation must be tightly controlled. Klaus Hahn and his research group use special dyes designed to report protein conformational changes and interactions, here in living neutrophil cells. Warmer colors in this image indicate higher levels of activation. Cdc42 looks to be activated at cell protrusions. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2451">2451</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2453">2453</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2454">2454</a>. | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | 1,228 | 625,576 | 1,508 | | Klaus Hahn, CBB | | | 295 | 32,871 | 362 | | 614 | 120,970 | 754 | Cells, Molecular Structures | | 4/18/2008 | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | | | Seeing signaling protein activation in cells 04 | Active | Photograph | | Cdc42, a member of the Rho family of small guanosine triphosphatase (GTPase) proteins, regulates multiple cell functions, including motility, proliferation, apoptosis, and cell morphology. In order to fulfill these diverse roles, the timing and location of Cdc42 activation must be tightly controlled. Klaus Hahn and his research group use special dyes designed to report protein conformational changes and interactions, here in living neutrophil cells. Warmer colors in this image indicate higher levels of activation. Cdc42 looks to be activated at cell protrusions. <Br><Br>Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2451">2451</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2452">2452</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2453">2453</a>. | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | 1,604 | 439,296 | 1,295 | | Klaus Hahn, CBB | | | 385 | 23,340 | 311 | | 803 | 83,980 | 648 | Cells, Molecular Structures | | 4/18/2008 | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | | | Golden gene chips | Active | Photograph | | A team of chemists and physicists used nanotechnology and DNA's ability to self-assemble with matching RNA to create a new kind of chip for measuring gene activity. When RNA of a gene of interest binds to a DNA tile (gold squares), it creates a raised surface (white areas) that can be detected by a powerful microscope. This nanochip approach offers manufacturing and usage advantages over existing gene chips and is a key step toward detecting gene activity in a single cell. Featured in the February 20, 2008, issue of <em>Biomedical Beat</em>. | | Hao Yan and Ph.D. candidate Yonggang Ke, Arizona State University | 299 | 32,511 | 400 | | Hao Yan, Arizona State University | | | 230 | 129,062 | 308 | | 150 | 24,803 | 200 | Genes, Tools and Techniques | | 4/21/2008 | 2/20/2008 BB | Hao Yan and Yonggang Ke, Arizona State University | | | Z rings in bacterial division | Active | Photograph | | Lab-made liposomes contract where Z rings have gathered together and the constriction forces are greatest (arrows). The top picture shows a liposome, and the bottom picture shows fluorescence from Z rings (arrows) inside the same liposome simultaneously. | | Masaki Osawa, Duke University | 567 | 87,474 | 670 | | Masaki Osawa, CBB | | | 136 | 5,459 | 161 | | 284 | 16,116 | 335 | Cells, Molecular Structures | | 5/2/2008 | | Masaki Osawa, Duke University | | | Dinosaur evolutionary tree | Active | Illustration | | Analysis of 68 million-year-old collagen molecule fragments preserved in a <em>T. rex</em> femur confirmed what paleontologists have said for decades: Dinosaurs are close relatives of chickens, ostriches, and to a lesser extent, alligators. A Harvard University research team, including NIGMS-supported postdoctoral research fellow Chris Organ, used sophisticated statistical and computational tools to compare the ancient protein to ones from 21 living species. Because evolutionary processes produce similarities across species, the methods and results may help illuminate other areas of the evolutionary tree. Featured in the May 21, 2008 <em>Biomedical Beat</em>. | | Chris Organ, Harvard University | 381 | 102,623 | 547 | | Chris Organ, Harvard University, postdoctoral fellow | | | 284 | 54,949 | 308 | | 191 | 14,419 | 274 | Genes, Tools and Techniques | | 6/27/2008 | May 2008 BB | Chris Organ, Harvard University | | | Glowing glycans | Active | Photograph | | Sugars light up the cells in this jaw of a 3-day-old zebrafish embryo and highlight a scientific first: labeling and tracking the movements of sugar chains called glycans in a living organism. Here, recently produced glycans (red) are on the cell surface while those made earlier in development (green) have migrated into the cells. In some areas, old and new glycans mingle (yellow). A better understanding of such traffic patterns could shed light on how organisms develop and may uncover markers for disease, such as cancer. Featured in the May 21, 2008 of <em>Biomedical Beat</em>. | | Carolyn Bertozzi, University of California, Berkeley | 310 | 89,901 | 310 | | Carolyn Bertozzi, University of California, Berkeley | | | 78 | 32,438 | 78 | | 155 | 8,153 | 155 | Cells | | 6/27/2008 | May 2008 BB | Carolyn Bertozzi, University of California, Berkeley | | | Cascade reaction promoted by water | Active | Illustration | | This illustration of an epoxide-opening cascade promoted by water emulates the proposed biosynthesis of some of the Red Tide toxins. | | Tim Jamison, Massachusetts Institute of Technology | 2,249 | 497,172 | 2,999 | Reference: Epoxide-Opening Cascades Promoted by Water by Ivan Vilotijevic and Timothy F. Jamison Science 2007 Vol 317 p. 1189-90. | | | | 575 | 103,920 | 767 | | 1,115 | 194,692 | 1,487 | Chemistry, Biochemistry, and Pharmacology | | 9/26/2008 | In Erik Sorensen Findings video (Fall 2008); Hall display | Tim Jamison, Massachusetts Institute of Technology | | | Immune cell attacks cell infected with a retrovirus | Active | Illustration | | T cells engulf and digest cells displaying markers (or antigens) for retroviruses, such as HIV. | | Kristy Whitehouse | 2,400 | 661,332 | 3,000 | See also 2487 for original, labeled version. Illustration from: http://scicom.ucsc.edu/SciNotes/0801/pages/virus/virus.html#virussidebar Kristy Whitehouse Science Illustrator www.kristyart.com 707.338.3298 Gave wide permission to use in 9/2/08 note to Janell Muhammad: I am honored to have you interested in using my work. Please find attached the Adobe Illustrator file "Retrovirus". You may use the attached image in publications from your office and in your image gallery. If you would prefer a different file type, please let me know and I will send your request promptly. | | | | 600 | 106,136 | 750 | | 1,200 | 237,984 | 1,500 | Cells | | 9/26/2008 | | Kristy Whitehouse, science illustrator | | | Trp_RS - tryptophanyl tRNA-synthetase family of enzymes | Active | Illustration | | This image represents the structure of TrpRS, a novel member of the tryptophanyl tRNA-synthetase family of enzymes. By helping to link the amino acid tryptophan to a tRNA molecule, TrpRS primes the amino acid for use in protein synthesis. A cluster of iron and sulfur atoms (orange and red spheres) was unexpectedly found in the anti-codon domain, a key part of the molecule, and appears to be critical for the function of the enzyme. TrpRS was discovered in Thermotoga maritima, a rod-shaped bacterium that flourishes in high temperatures. | | Joint Center for Structural Genomics | 2,486 | 1,002,209 | 1,629 | | | | | 773 | 158,374 | 507 | | 1,243 | 274,260 | 815 | Genes, Molecular Structures | | 8/6/2008 | | | | | Chromosome fiber 01 | Active | Photograph | | This microscopic image shows a chromatin fiber--a DNA molecule bound to naturally occurring proteins. | | Marc Green and Susan Forsburg, University of Southern California | 459 | 100,869 | 1,800 | To see note from Susan Forsburg (too large for this box), see chromosome fiber 02. Obtained by Emily Carlson. | Susan Forsburg, University of Southern Californi | genetics | | 110 | 14,773 | 432 | | 230 | 37,176 | 900 | Genes | | 6/27/2008 | | Marc Green and Susan Forsburg, University of Southern California | | | VDAC-1 (1) | Active | Illustration | | | | Sebastian Hiller and Gerhard Wagner, Harvard Medical School | 532 | 90,743 | 563 | Hi Alisa, of course it is perfectly fine to include the figures we sent you. May be you should write "Courtesey of Sebastian Hiller and Gerhard Wagner". If you want we also can send you a movie with a rotating structure but this would be about 23 MB. May be the still pictures are fine. Let me know if you need anything else. Regards Gerhard Appeared as an announcement on the NIGMS Web site on Sept 4, 2008: http://www.nigms.nih.gov/News/Results/20080904_announce.htm | Gerhard Wagner | structure | | 291 | 98,150 | 308 | | 266 | 22,736 | 282 | Molecular Structures | | 9/15/2008 | | Gerhard Wagner, Harvard Medical School | | | VDAC-1 (3) | Active | Illustration | | | | Sebastian Hiller and Gerhard Wagner, Harvard Medical School | 532 | 114,869 | 563 | Hi Alisa, of course it is perfectly fine to include the figures we sent you. May be you should write "Courtesey of Sebastian Hiller and Gerhard Wagner". If you want we also can send you a movie with a rotating structure but this would be about 23 MB. May be the still pictures are fine. Let me know if you need anything else. Regards Gerhard Appeared as an announcement on the NIGMS Web site on Sept 4, 2008: http://www.nigms.nih.gov/News/Results/20080904_announce.htm | Gerhard Wagner | | | 291 | 99,926 | 308 | | 266 | 22,976 | 282 | Molecular Structures | | 9/26/2008 | | Gerhard Wagner, Harvard Medical School | | | RNA Polymerase II | Active | Illustration | | NIGMS-funded researchers led by Roger Kornberg solved the structure of RNA polymerase II. This is the enzyme in mammalian cells that catalyzes the transcription of DNA into messenger RNA, the molecule that in turn dictates the order of amino acids in proteins. For his work on the mechanisms of mammalian transcription, Kornberg received the Nobel Prize in Chemistry in 2006. | | David Bushnell, Ken Westover and Roger Kornberg, Stanford University | 6,000 | 4,182,156 | 8,000 | David Bushnell (bushnell@stanford.edu) gave credit line and said: "You have my permission to use the image in future NIGMS publications and to put it in your online image gallery." in 7/29/08 note to AZM. PDB identifiers: 1SFO and 1R9T | Roger Kornberg, Stanford University | | | 1,440 | 410,900 | 1,920 | | 3,000 | 1,211,939 | 4,000 | Genes, Molecular Structures | | | Stetten Lecture 2008 | David Bushnell, Ken Westover and Roger Kornberg, Stanford University | | | VDAC-1 (2) | Active | Illustration | | | | Sebastian Hiller and Gerhard Wagner, Harvard Medical School | 532 | 115,033 | 563 | Hi Alisa, of course it is perfectly fine to include the figures we sent you. May be you should write "Courtesey of Sebastian Hiller and Gerhard Wagner". If you want we also can send you a movie with a rotating structure but this would be about 23 MB. May be the still pictures are fine. Let me know if you need anything else. Regards Gerhard Appeared as an announcement on the NIGMS Web site on Sept 4, 2008: http://www.nigms.nih.gov/News/Results/20080904_announce.htm | Gerhard Wagner | | | 291 | 99,305 | 308 | | 266 | 23,115 | 282 | Molecular Structures | | 9/26/2008 | | Gerhard Wagner, Harvard Medical School | | | RAC1 activation in motile fibroblast | Active | Video | | Novel biosensor system maps the timing and location of Rac protein activation in a living mouse embryo fibroblast. | | Chris Welch, Lou Hodgson, and Klaus Hahn, University of North Carolina at Chapel Hill. | | 642,039 | | | Klaus Hahn, CBB | Structure | | | | | | | | | Cells, Molecular Structures | | 5/2/2008 | | Klaus Hahn, University of North Carolina, Chapel Hill Medical School | | | Body toxins | Active | Illustration | | | | National Institute of General Medical Sciences | 1,558 | 398,151 | 1,062 | | | | | 390 | 49,825 | 266 | | 779 | 91,140 | 531 | Cells | | 10/3/2008 | Findings - February 2004 | Crabtree + Company | | | Body toxins (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,561 | 440,639 | 1,071 | | | | | 390 | 54,567 | 268 | | 781 | 102,098 | 536 | Cells | | 10/9/2008 | Findings- February 2004 | Crabtree + Company | | | VDAC-1 (4) | Active | Illustration | | | | Sebastian Hiller and Gerhard Wagner, Harvard Medical School | 532 | 113,447 | 563 | Hi Alisa, of course it is perfectly fine to include the figures we sent you. May be you should write "Courtesey of Sebastian Hiller and Gerhard Wagner". If you want we also can send you a movie with a rotating structure but this would be about 23 MB. May be the still pictures are fine. Let me know if you need anything else. Regards Gerhard Appeared as an announcement on the NIGMS Web site on Sept 4, 2008: http://www.nigms.nih.gov/News/Results/20080904_announce.htm | Gerhard Wagner | | | 291 | 98,522 | 308 | | 266 | 22,482 | 282 | Molecular Structures | | 9/26/2008 | | Gerhard Wagner, Harvard Medical School | | | Cell cycle (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 808 | 178,518 | 1,068 | | | inactive | | 202 | 37,920 | 267 | | 404 | 56,094 | 534 | Cells | | | Findings- September 2003 | Crabtree + Company | | | Cell cycle | Active | Illustration | | | | National Institute of General Medical Sciences | 808 | 159,438 | 1,068 | | | inactive | | 202 | 35,068 | 267 | | 404 | 49,997 | 534 | Cells | | 10/9/2008 | Findings- September 2003 | Crabtree + Company | | | Glucose and sucrose | Active | Illustration | | Glucose (top) and sucrose (bottom) are sugars made of carbon, hydrogen, and oxygen atoms. Carbohydrates include simple sugars like these and are the main source of energy for the human body. | | National Institute of General Medical Sciences | 883 | 186,891 | 718 | | | sugar | | 379 | 73,109 | 308 | | 442 | 60,724 | 359 | Chemistry, Biochemistry, and Pharmacology | | 10/9/2008 | Findings-October 2004 | Crabtree + Company | | | Influenza virus attaches to host membrane (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,216 | 537,166 | 1,112 | | Mavis Agbandje-McKenna, University of Florida | | | 304 | 63,647 | 278 | | 608 | 118,740 | 556 | Cells | | 10/9/2008 | Findings- March 2006 | Crabtree + Company | | | Focal adhesions (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 486 | 323,040 | 2,064 | | Andrés García, Georgia Insitute of Technology | | | 121 | 46,181 | 516 | | 243 | 85,660 | 1,032 | Cells | | 10/9/2008 | Findings- March 2005 | Crabtree + Company | | | Carbon building blocks (with examples) | Active | Illustration | | | | National Institute of General Medical Sciences | 640 | 486,358 | 1,564 | | | | | 160 | 61,255 | 391 | | 320 | 113,997 | 782 | Chemistry, Biochemistry, and Pharmacology | | 10/9/2008 | Findings- March 2006 | Crabtree + Company | | | Carbon building blocks | Active | Illustration | | | | National Institute of General Medical Sciences | 640 | 452,470 | 1,564 | | | | | 160 | 59,416 | 391 | | 320 | 108,557 | 782 | Chemistry, Biochemistry, and Pharmacology | | 10/9/2008 | Findings- March 2006 | Crabtree + Company | | | Building blocks and folding of proteins | Active | Illustration | | | | National Institute of General Medical Sciences | 1,752 | 587,143 | 2,180 | | | structure | | 438 | 54,143 | 545 | | 876 | 106,023 | 1,090 | Molecular Structures | | 10/10/2008 | The Structures of Life page 3 | Crabtree + Company | | | Focal adhesions | Active | Illustration | | | | National Institute of General Medical Sciences | 507 | 284,137 | 2,073 | | Andrés García, Georgia Insitute of Technology | | | 126 | 40,291 | 520 | | 253 | 70,544 | 1,038 | Cells | | 10/9/2008 | Findings- March 2005 | Crabtree + Company | | | From DNA to Protein | Active | Illustration | | | | National Institute of General Medical Sciences | 1,428 | 869,434 | 4,218 | | | central dogma
| | 356 | 20,180 | 1,054 | | 714 | 71,640 | 2,109 | Genes | | 10/10/2008 | The Structures of Life pages 12-13 | Crabtree + Company | | | From DNA to Protein (labeled) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,428 | 960,870 | 4,218 | | | Central Dogma | | 356 | 23,748 | 1,054 | | 714 | 85,824 | 2,109 | Genes | | 10/10/2008 | The Structures of Life pages 12-13 | Crabtree + Company | | | Life of an AIDS virus | Active | Illustration | | | | Louis E. Henderson, National Cancer Institute | 3,210 | 5,383,403 | 3,504 | Illustration courtesy of Louis E. Henderson, Senior Scientist (emeritus, retired) AIDS Vaccine Program, National Cancer Institute (Frederick, MD) | | | | 802 | 266,547 | 876 | | 1,605 | 771,642 | 1,752 | Genes, Molecular Structures | | 10/10/2008 | The Structures of Life pages 36-37 | Crabtree + Company | | | X-ray crystallography | Active | Illustration | | | | National Institute of General Medical Sciences | 1,398 | 529,831 | 3,066 | | | | | 349 | 12,442 | 766 | | 699 | 43,984 | 1,533 | Tools and Techniques | | 10/10/2008 | The Structures of Life pages 14-15 | Crabtree + Company | | | Life of an AIDS virus (with labels) | Active | Illustration | | | | Louis E. Henderson, National Cancer Institute | 3,210 | 5,452,723 | 3,504 | Illustration courtesy of Louis E. Henderson, Senior Scientist (emeritus, retired) AIDS Vaccine Program, National Cancer Institute (Frederick, MD) | | | | 778 | 253,486 | 850 | | 1,440 | 645,974 | 1,572 | Genes, Molecular Structures | | 10/10/2008 | The Structures of Life pages 36-37 Life | Crabtree + Company | | | Life of an AIDS virus (with labels and stages) | Active | Illustration | | | | Louis E. Henderson, National Cancer Institute | 3,210 | 5,885,877 | 3,504 | Illustration courtesy of Louis E. Henderson, Senior Scientist (emeritus, retired) AIDS Vaccine Program, National Cancer Institute (Frederick, MD) | | | | 802 | 308,297 | 876 | | 1,605 | 903,757 | 1,752 | Genes, Molecular Structures | | 10/10/2008 | The Structures of Life pages 36-37 | Crabtree + Company | | | X-ray crystallography (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,398 | 561,102 | 3,066 | | | | | 349 | 13,945 | 766 | | 699 | 49,598 | 1,533 | Tools and Techniques | | 10/10/2008 | The Structures of Life pages 14-15 | Crabtree + Company | | | ATP synthase | Active | Illustration | | | | National Institute of General Medical Sciences | 993 | 174,412 | 1,037 | | | | | 249 | 31,242 | 260 | | 497 | 45,572 | 519 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | The Chemistry of Health page 3 | Crabtree + Company | | | ATP synthase (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 993 | 247,329 | 1,037 | | | | | 249 | 38,047 | 260 | | 497 | 62,578 | 519 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | The Chemistry of Health page 3 | Crabtree + Company | | | Bond types | Active | Illustration | | | | National Institute of General Medical Sciences | 1,556 | 422,756 | 1,520 | | | | | 389 | 51,990 | 380 | | 778 | 90,757 | 760 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | The Chemistry of Health page 9 | Crabtree + Company | | | Bond types (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,556 | 549,160 | 1,520 | | | | | 389 | 64,500 | 380 | | 778 | 120,380 | 760 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | The Chemistry of Health page 9 | Crabtree + Company | | | Enzymes convert subtrates into products | Active | Illustration | | | | National Institute of General Medical Sciences | 1,020 | 235,836 | 1,468 | | | structure | | 255 | 34,978 | 367 | | 510 | 51,644 | 734 | Molecular Structures | | 10/16/2008 | The Chemistry of Health page 17 | Crabtree + Company | | | Enzymes convert subtrates into products (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,020 | 309,768 | 1,468 | | | structure | | 255 | 42,583 | 367 | | 1,020 | 309,768 | 1,468 | Molecular Structures | | 10/16/2008 | The Chemistry of Health page 17 | Crabtree + Company | | | Plasma membrane | Active | Illustration | | | | National Institute of General Medical Sciences | 1,820 | 1,171,228 | 2,384 | | | | | 453 | 82,421 | 595 | | 910 | 178,489 | 1,193 | Cells, Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | The Chemistry of Health page 24 | Crabtree + Company | | | Plasma membrane (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,820 | 1,256,053 | 2,384 | | | | | 454 | 92,415 | 595 | | 910 | 206,026 | 1,192 | Cells, Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | The Chemistry of Health page 24 | Crabtree + Company | | | Activation energy | Active | Illustration | | | | National Institute of General Medical Sciences | 1,218 | 188,630 | 1,504 | | | | | 304 | 27,838 | 376 | | 609 | 39,638 | 752 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | The Chemistry of Health page 53 | Crabtree + Company | | | Activation energy (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,218 | 220,030 | 1,504 | | | | | 304 | 30,920 | 376 | | 609 | 47,317 | 752 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | The Chemistry of Health page 53 | Crabtree + Company | | | A drug's life in the body | Active | Illustration | | | | National Institute of General Medical Sciences | 2,564 | 1,168,239 | 2,292 | | | pharmacokinetics, PK, Pharmacodynamics, PD, Pharmacology, Drug Delivery | | 671 | 104,150 | 600 | | 1,285 | 218,587 | 1,149 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | Medicines by Design page 6 | Crabtree + Company | | | Aspirin | Active | Illustration | | | | National Institute of General Medical Sciences | 1,840 | 611,495 | 2,288 | | | NSAID, nonsteroidal anti-inflammatory drug, pain reliever, natural product | | 460 | 56,933 | 572 | | 920 | 109,449 | 1,144 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | Medicines by Design page 20 | Crabtree + Company | | | A drug's life in the body (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 2,564 | 1,229,657 | 2,292 | | | pharmacokinetics, PK, Pharmacodynamics, PD, Pharmacology, Drug Delivery | | 626 | 101,298 | 560 | | 1,284 | 230,469 | 1,148 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | Medicines by Design page 6 | Crabtree + Company | | | Drugs enter skin | Active | Illustration | | | | National Institute of General Medical Sciences | 1,528 | 548,666 | 1,524 | | | | | 382 | 85,896 | 381 | | 764 | 217,998 | 762 | Cells, Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | Medicines by Design page 7 | Crabtree + Company | | | Aspirin (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,840 | 643,905 | 2,288 | | | NSAID, nonsteroidal anti-inflammatory drug, pain reliever, natural product | | 460 | 59,581 | 572 | | 920 | 116,570 | 1,144 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | Medicines by Design page 20 | Crabtree + Company | | | Drugs enter skin (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,528 | 586,189 | 1,524 | | | | | 382 | 55,190 | 381 | | 764 | 109,393 | 762 | Cells, Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | Medicines by Design page 7 | Crabtree + Company | | | Kinases (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,124 | 250,677 | 1,436 | | | | | 281 | 35,591 | 359 | | 562 | 56,059 | 718 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 10/16/2008 | Medicines by Design page 42 | Crabtree + Company | | | Kinases | Active | Illustration | | | | National Institute of General Medical Sciences | 1,124 | 214,562 | 1,436 | | | | | 281 | 31,933 | 359 | | 562 | 47,390 | 718 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 10/16/2008 | Medicines by Design page 42 | Crabtree + Company | | | Dose response curves | Active | Illustration | | | | National Institute of General Medical Sciences | 772 | 759,007 | 839 | | | | | 283 | 131,406 | 308 | | 386 | 94,962 | 420 | Chemistry, Biochemistry, and Pharmacology | | 10/16/2008 | Medicines by Design | Crabtree + Company | | | G switch | Active | Illustration | | | | National Institute of General Medical Sciences | 880 | 427,611 | 2,460 | | | structuce, protein | | 220 | 42,014 | 615 | | 440 | 80,605 | 1,230 | Cells, Molecular Structures | | 10/16/2008 | Medicines by Design page 46 | Crabtree + Company | | | G switch (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 880 | 524,515 | 2,460 | | | structure, protein | | 220 | 50,259 | 615 | | 440 | 102,280 | 1,230 | Cells, Molecular Structures | | 10/16/2008 | Medicines by Design page 46 | Crabtree + Company | | | G switch (with labels and stages) | Active | Illustration | | | | National Institute of General Medical Sciences | 880 | 533,412 | 2,460 | | | structure, protein | | 220 | 51,123 | 615 | | 440 | 104,392 | 1,230 | Cells, Molecular Structures | | 10/16/2008 | Medicines by Design page 46 | Crabtree + Company | | | Nucleotides make up DNA | Active | Illustration | | | | National Institute of General Medical Sciences | 2,312 | 587,932 | 1,232 | | | | | 578 | 63,647 | 308 | | 1,156 | 119,929 | 616 | Genes | | 10/16/2008 | The New Genetics page 7 | Crabtree + Company | | | Chromosome inside nucleus | Active | Illustration | | | | National Institute of General Medical Sciences | 1,740 | 557,742 | 1,228 | | | gene | | 435 | 52,363 | 307 | | 870 | 103,029 | 614 | Genes | | 10/16/2008 | The New Genetics page 7 | Crabtree + Company | | | Chromosome inside nucleus (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,740 | 588,962 | 1,228 | | | gene | | 435 | 56,099 | 307 | | 870 | 112,319 | 614 | Genes | | 10/16/2008 | The New Genetics page 7 | Crabtree + Company | | | Nucleotides make up DNA (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 2,312 | 624,897 | 1,232 | | | | | 581 | 70,073 | 310 | | 1,156 | 136,683 | 616 | Genes | | 10/16/2008 | The New Genetics page 7 | Crabtree + Company | | | DNA replication illustration (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 2,512 | 855,161 | 1,196 | | | | | 630 | 92,187 | 300 | | 1,260 | 184,693 | 600 | Genes | | 10/17/2008 | The New Genetics page 9 | Crabtree + Company | | | Meiosis illustration | Active | Illustration | | | | National Institute of General Medical Sciences | 2,984 | 1,219,339 | 2,215 | | | | | 744 | 87,645 | 553 | | 1,491 | 199,948 | 1,107 | Genes | | 10/17/2008 | The New Genetics page 10 | Crabtree + Company | | | DNA replication illustration | Active | Illustration | | | | National Institute of General Medical Sciences | 2,512 | 789,793 | 1,196 | | | | | 630 | 88,054 | 300 | | 1,260 | 172,295 | 600 | Genes | | 10/17/2008 | The New Genetics page 9 | Crabtree + Company | | | Meiosis illustration (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 2,984 | 1,354,829 | 2,215 | | | | | 744 | 102,438 | 553 | | 1,491 | 242,172 | 1,107 | Genes | | 10/17/2008 | The New Genetics page 10 | Crabtree + Company | | | Central dogma, illustrated | Active | Illustration | | | | National Institute of General Medical Sciences | 1,950 | 1,226,032 | 3,510 | | | genetics | | 487 | 28,560 | 878 | | 975 | 98,825 | 1,755 | Genes | | 10/17/2008 | The New Genetics pages 12-13. | Crabtree + Company | | | Central dogma, illustrated (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,950 | 1,374,933 | 3,510 | | | genetics | | 487 | 32,326 | 878 | | 975 | 116,206 | 1,755 | Genes | | 10/17/2008 | The New Genetics pages 12-13 | Crabtree + Company | | | Introns (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,340 | 416,998 | 1,988 | | | genetics | | 331 | 49,186 | 492 | | 670 | 91,787 | 994 | Genes | | 10/17/2008 | The New Genetics page 15 | Crabtree + Company | | | Central dogma, illustrated (with labels and numbers for stages) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,950 | 1,382,956 | 3,510 | | | genetics | | 487 | 32,765 | 878 | | 975 | 117,531 | 1,755 | Genes | | 10/17/2008 | The New Genetics pages 12-13 | Crabtree + Company | | | Alternative splicing (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,340 | 409,155 | 1,988 | | | | | 331 | 48,639 | 492 | | 670 | 87,991 | 994 | Genes | | 10/17/2008 | The New Genetics page 15 | Crabtree + Company | | | Alternative splicing | Active | Illustration | | | | National Institute of General Medical Sciences | 1,340 | 360,154 | 1,988 | | | | | 331 | 42,335 | 492 | | 670 | 73,051 | 994 | Genes | | 10/17/2008 | The New Genetics page 15 | Crabtree + Company | | | RNA interference | Active | Illustration | | | | National Institute of General Medical Sciences | 2,728 | 854,731 | 2,372 | | | | | 678 | 71,819 | 590 | | 1,358 | 147,883 | 1,181 | Genes | | 10/17/2008 | The New Genetics page 28 | Crabtree + Company | | | Introns | Active | Illustration | | | | National Institute of General Medical Sciences | 1,340 | 353,159 | 1,988 | | | genetics | | 333 | 41,423 | 495 | | 670 | 73,032 | 994 | Genes | | 10/17/2008 | The New Genetics page 15 | Crabtree + Company | | | RNA strand (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,892 | 300,521 | 669 | | | | | 871 | 112,616 | 308 | | 947 | 69,974 | 335 | Genes | | 10/17/2008 | The New Genetics page 24 | Crabtree + Company | | | Dicer generates microRNAs (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,076 | 287,124 | 1,388 | | | | | 269 | 43,828 | 347 | | 538 | 73,036 | 694 | Genes | | 10/17/2008 | The New Genetics page 26 | Crabtree + Company | | | Dicer generates microRNAs | Active | Illustration | | | | National Institute of General Medical Sciences | 1,076 | 237,696 | 1,388 | | | | | 269 | 36,357 | 347 | | 538 | 56,872 | 694 | Genes | | 10/17/2008 | The New Genetics page 26 | Crabtree + Company | | | RNA strand | Active | Illustration | | | | National Institute of General Medical Sciences | 1,892 | 262,046 | 669 | | | | | 871 | 99,303 | 308 | | 947 | 60,990 | 335 | Genes | | 10/17/2008 | The New Genetics page 24 | Crabtree + Company | | | RNA interference (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 2,728 | 932,524 | 2,372 | | | | | 678 | 80,522 | 590 | | 1,358 | 169,706 | 1,181 | Genes | | 10/17/2008 | The New Genetics page 28 | Crabtree + Company | | | Histones in chromatin (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,218 | 587,340 | 1,878 | | | | | 304 | 57,100 | 470 | | 609 | 115,642 | 939 | Genes, Molecular Structures | | 10/17/2008 | The New Genetics page 30 | Crabtree + Company | | | Histones in chromatin | Active | Illustration | | | | National Institute of General Medical Sciences | 1,218 | 569,112 | 1,878 | | | | | 304 | 54,899 | 470 | | 609 | 110,190 | 939 | Genes, Molecular Structures | | 10/17/2008 | The New Genetics page 30 | Crabtree + Company | | | Epigenetic code | Active | Illustration | | | | National Institute of General Medical Sciences | 2,406 | 675,022 | 1,566 | | | | | 602 | 69,102 | 392 | | 1,203 | 139,487 | 783 | Genes | | 10/17/2008 | The New Genetics page 31 | Crabtree + Company | | | Recombinant DNA | Active | Illustration | | | | National Institute of General Medical Sciences | 2,488 | 628,412 | 1,628 | | | | | 621 | 54,447 | 407 | | 1,245 | 109,940 | 815 | Genes | | 10/17/2008 | The New Genetics page 38 | Crabtree + Company | | | Epigenetic code (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 2,406 | 696,178 | 1,566 | | | | | 602 | 72,147 | 392 | | 1,203 | 146,334 | 783 | Genes | | 10/17/2008 | The New Genetics page 31 | Crabtree + Company | | | Haplotypes | Active | Illustration | | | | National Institute of General Medical Sciences | 1,220 | 372,198 | 1,852 | | | | | 304 | 41,748 | 463 | | 609 | 74,132 | 925 | Genes | | 10/17/2008 | The New Genetics page 43 | Crabtree + Company | | | Haplotypes (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 1,220 | 429,536 | 1,852 | | | | | 304 | 50,399 | 463 | | 609 | 96,492 | 925 | Genes | | 10/17/2008 | The New Genetics page 43 | Crabtree + Company | | | Recombinant DNA (with labels) | Active | Illustration | | | | National Institute of General Medical Sciences | 2,488 | 824,182 | 1,628 | | | | | 621 | 78,583 | 407 | | 1,245 | 174,602 | 815 | Genes | | 10/17/2008 | The New Genetics | Crabtree + Company | | | Circadian rhythm (with labels) | Active | Illustration | | The human body keeps time with a master clock called the suprachiasmatic nucleus or SCN. Situated inside the brain, it's a tiny sliver of tissue about the size of a grain of rice, located behind the eyes. It sits quite close to the optic nerve, which controls vision, and this means that the SCN "clock" can keep track of day and night. The SCN helps control sleep and maintains our circadian rhythm--the regular, 24-hour (or so) cycle of ups and downs in our bodily processes such as hormone levels, blood pressure, and sleepiness. The SCN regulates our circadian rhythm by coordinating the actions of billions of miniature "clocks" throughout the body. These aren't actually clocks, but rather are ensembles of genes inside clusters of cells that switch on and off in a regular, 24-hour (or so) cycle in our physiological day. | | National Institute of General Medical Sciences | 768 | 326,136 | 1,240 | | | | | 192 | 46,282 | 310 | | 384 | 79,677 | 620 | Genes | | 10/17/2008 | The New Genetics page 56 Circadian Rhythms fact sheet | Crabtree + Company | | | Simulation of controlled avian flu outbreak | Active | Video | | | | Neil M. Ferguson, Imperial College London | | 319,718 | | | | | | | | | | | | | Injury and Illness | | 12/3/2008 | | Neil M. Ferguson, Imperial College London | | | VDAC video 03 | Active | Video | | | | Sebastian Hiller and Gerhard Wagner, Harvard Medical School | | 1,625,474 | | Hi Alisa, of course it is perfectly fine to include the figures we sent you. May be you should write "Courtesey of Sebastian Hiller and Gerhard Wagner". If you want we also can send you a movie with a rotating structure but this would be about 23 MB. May be the still pictures are fine. Let me know if you need anything else. Regards Gerhard Appeared as an announcement on the NIGMS Web site on Sept 4, 2008: http://www.nigms.nih.gov/News/Results/20080904_announce.htm | Gerhard Wagner | 3-D | | | | | | | | | Molecular Structures | | 11/14/2008 | | Gerhard Wagner, Harvard Medical School | | | VDAC video 01 | Active | Video | | | | Sebastian Hiller and Gerhard Wagner, Harvard Medical School | | 2,042,477 | | Hi Alisa, of course it is perfectly fine to include the figures we sent you. May be you should write "Courtesey of Sebastian Hiller and Gerhard Wagner". If you want we also can send you a movie with a rotating structure but this would be about 23 MB. May be the still pictures are fine. Let me know if you need anything else. Regards Gerhard Appeared as an announcement on the NIGMS Web site on Sept 4, 2008: http://www.nigms.nih.gov/News/Results/20080904_announce.htm | Gerhard Wagner | 3-D | | | | | | | | | Molecular Structures | | 11/14/2008 | | Gerhard Wagner, Harvard Medical School | | | Simulation of uncontrolled avian flu outbreak | Active | Video | | | | Neil M. Ferguson, Imperial College London | | 4,578,557 | | Related to paper by Ferguson and others in August 3, 2005 issue of Nature. | | | | | | | | | | | Injury and Illness | | 12/3/2008 | | Neil M. Ferguson, Imperial College London | | | VDAC video 02 | Active | Video | | | | Sebastian Hiller and Gerhard Wagner, Harvard Medical School | | 1,485,652 | | Hi Alisa, of course it is perfectly fine to include the figures we sent you. May be you should write "Courtesey of Sebastian Hiller and Gerhard Wagner". If you want we also can send you a movie with a rotating structure but this would be about 23 MB. May be the still pictures are fine. Let me know if you need anything else. Regards Gerhard Appeared as an announcement on the NIGMS Web site on Sept 4, 2008: http://www.nigms.nih.gov/News/Results/20080904_announce.htm | Gerhard Wagner | 3-D | | | | | | | | | Molecular Structures | | 11/14/2008 | | Gerhard Wagner, Harvard Medical School | | | Cellular aging | Active | Photograph | | A protein called tubulin (green) accumulates in the center of a nucleus (outlined in pink) from an aging cell. Normally, this protein is kept out of the nucleus with the help of gatekeepers known as nuclear pore complexes. But NIGMS-funded researchers found that wear and tear to long-lived components of the complexes eventually lowers the gatekeepers' guard. As a result, cytoplasmic proteins like tubulin gain entry to the nucleus while proteins normally confined to the nucleus seep out. The work suggests that finding ways to stop the leakage could slow the cellular aging process and possibly lead to new therapies for age-related diseases. | | Maximiliano D'Angelo and Martin Hetzer, Salk Institute | 1,272 | 424,639 | 959 | | Maximiliano D'Angelo and Martin Hetzer, Salk Institute | | | 317 | 79,328 | 239 | | 634 | 179,271 | 478 | Cells, Molecular Structures | | 2/20/2009 | 2/09 BB | Maximiliano D'Angelo and Martin Hetzer, Salk Institute | | | Bottles of warfarin | Active | Photograph | | In 2007, the FDA modified warfarin's label to indicate that genetic makeup may affect patient response to the drug. The widely used blood thinner is sold under the brand name Coumadin®. Scientists involved in the NIH Pharmacogenetics Research Network are investigating whether genetic information can be used to improve optimal dosage prediction for patients. | | Alisa Machalek, NIGMS/NIH | 258 | 18,184 | 250 | | | | | 318 | 82,822 | 308 | | 129 | 11,194 | 125 | Chemistry, Biochemistry, and Pharmacology, Genes | | 2/20/2009 | 2/18/2009 NIGMS news release. 2/09 BB | Alisa Machalek, NIGMS/NIH | | | Cone snail shell | Active | Photograph | | A shell from the venomous cone snail <i>Conus omaria</i>, which lives in the Pacific and Indian oceans and eats other snails. University of Utah scientists discovered a new toxin in this snail species' venom, and say it will be a useful tool in designing new medicines for a variety of brain disorders, including Alzheimer's and Parkinson's diseases, depression, nicotine addiction and perhaps schizophrenia. | | Kerry Matz, University of Utah | 1,078 | 744,731 | 2,000 | | | | | 269 | 47,217 | 500 | | 539 | 123,605 | 1,000 | Tools and Techniques | | 12/15/2008 | | Kerry Matz, University of Utah | | | Heart rates time series | Inactive | Video | | These time series show the heart rates of four different individuals. Automakers use steel scraps to build cars, construction companies repurpose tires to lay running tracks, and now scientists are reusing previously discarded medical data to better understand our complex physiology. Through a website called PhysioNet developed in part by Beth Israel Deaconess Medical Center cardiologist Ary Goldberger, scientists can access complete physiologic recordings, such as heart rate, respiration, brain activity and gait. They then can use free software to analyze the data and find patterns in it. The patterns could ultimately help health care professionals diagnose and treat health conditions like congestive heart failure, sleeping disorders, epilepsy and walking problems. PhysioNet is supported by NIH's National Institute of Biomedical Imaging and Bioengineering as well as by NIGMS. See photograph with ID <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3596"><em>3596</em></a> in Image Gallery. | | Madalena Costa and Ary Goldberger, Beth Israel Deaconess Medical Center | | 249 | | | Ary Goldberger, Beth Israel Deaconess Medical | | | 284 | 93,490 | 308 | | | | | Tools and Techniques | | 2/27/2009 | 2/09 BB | Madalena Costa and Ary Goldberger, Beth Israel Deaconess Medical Center | | | Genetic patchworks | Active | Illustration | | Each point in these colorful patchworks represents the correlation between two sleep-associated genes in fruit flies. Vibrant reds and oranges represent high and intermediate degrees of association between the genes, respectively. Genes in these areas show similar activity patterns in different fly lines. Cool blues represent gene pairs where one partner's activity is high and the other's is low. The green areas show pairs with activities that are not correlated. These quilt-like depictions help illustrate a recent finding that genes act in teams to influence sleep patterns. | | Susan Harbison and Trudy Mackay, North Carolina State University | 310 | 146,676 | 922 | | Susan Harbison and Trudy Mackay, North Carolina State University | | | 74 | 6,814 | 221 | | 155 | 20,158 | 461 | Genes | | 3/26/2009 | March 2009 Biomedical Beat | Susan Harbison and Trudy Mackay, North Carolina State University | | | Sleep and the fly brain | Active | Photograph | | In the top snapshots, the brain of a sleep-deprived fruit fly glows orange, marking high concentrations of a synaptic protein called Bruchpilot (BRP) involved in communication between neurons. The color particularly lights up brain areas associated with learning. By contrast, the bottom images from a well-rested fly show lower levels of the protein. These pictures illustrate the results of an April 2009 study showing that sleep reduces the protein's levels, suggesting that such "downscaling" resets the brain to normal levels of synaptic activity and makes it ready to learn after a restful night. | | Chiara Cirelli, University of Wisconsin-Madison | 411 | 200,216 | 422 | | Chiara Cirelli, University of Wisconsin-Madison | | | 98 | 8,287 | 101 | | 206 | 28,368 | 211 | Molecular Structures | | 5/21/2009 | BB 4/09 cool image | Chiara Cirelli, University of Wisconsin-Madison | | | Katanin protein regulates anaphase | Active | Photograph | | The microtubule severing protein, katanin, localizes to chromosomes and regulates anaphase A in mitosis. The movement of chromosomes on the mitotic spindle requires the depolymerization of microtubule ends. The figure shows the mitotic localization of the microtubule severing protein katanin (green) relative to spindle microtubules (red) and kinetochores/chromosomes (blue). Katanin targets to chromosomes during both metaphase (top) and anaphase (bottom) and is responsible for inducing the depolymerization of attached microtubule plus-ends. This image was a finalist in the <a href=" http://drosophila-images.org/">2008 Drosophila Image Award <img src="/PublishingImages/exitdisclaimer.gif" alt="Link to external website" style="border-width: 0px;"/></a>. | | David Sharp, Albert Einstein College of Medicine | 523 | 75,436 | 700 | From drosophila-images.org. David J. Sharp 3/20/09 e-mail to KJ: "we'd be happy to have it included in your image gallery and newsletter." The microtubule severing protein, katanin, localizes to chromosomes and regulates anaphase A The movement of chromosomes on the mitotic spindle requires the depolymerization of microtubule ends. The figure shows the mitotic localization of the microtubule severing protein katanin (green) relative to spindle microtubules (red) and kinetochores/chromosomes (blue). Katanin targets to chromosomes during both metaphase (top) and anaphase (bottom) and is responsible for inducing the depolymerization of attached microtubule plus-ends. We have proposed that katanin does so specifically by removing stabilizing plus-end ?caps?. Dong Zhang, Gregory C. Rogers, Daniel W. Buster, and David J. Sharp. Three microtubule severing proteins contribute to the ?Pacman-Flux? machinery that moves chromosomes. The Journal of Cell Biology, 177, 231-242 (2007). | David Sharp, Albert Einstein College of Medicine | | | 131 | 6,003 | 175 | | 262 | 13,515 | 350 | Genes, Molecular Structures | | 5/1/2009 | | David Sharp, Albert Einstein College of Medicine | | | Precise development in the fruit fly embryo | Active | Photograph | | This 2-hour-old fly embryo already has a blueprint for its formation, and the process for following it is so precise that the difference of just a few key molecules can change the plans. Here, blue marks a high concentration of Bicoid, a key signaling protein that directs the formation of the fly's head. It also regulates another important protein, Hunchback (green), that further maps the head and thorax structures and partitions the embryo in half (red is DNA). The yellow dots overlaying the embryo plot the concentration of Bicoid versus Hunchback proteins within each nucleus. The image illustrates the precision with which an embryo interprets and locates its halfway boundary, approaching limits set by simple physical principles. This image was a finalist in the <a href=" http://drosophila-images.org/">2008 Drosophila Image Award <img src="/PublishingImages/exitdisclaimer.gif" alt="Link to external website" style="border-width: 0px;"/></a>. | | Thomas Gregor, Princeton University | 956 | 294,589 | 980 | It would be great to be part of your gallery and to be featured on BioBeat. I acquired, analyzed and composed the image. Please put tglab.princeton.edu in "source". Gregor, Department of Physics Drosoph embryo 2 hr after fertilization w/ nuclei at the surface fluorescently labeled for Bicoid protein (blue), Hunchback prot (green) and DNA (red). Using two-photon microscopy these embryos were imaged to quantitatively characterize the dynamics and precision of how morphogen molecs comuncte positional info to indiv nuclei. The shallow Bicoid gradient generates a sharp Hunchback boundary, partitioning the embryo in half. This input/output relationship is quantitatively rep?d in the foreground (yellow), where each dot specifies the Bicoid concentration (horizontal axis) and Hunchback concentration (vertical axis) measured in a single nucleus. This illustrates the precision with which an embryo interprets and locates this boundary, approaching limits set by simple physical principles. http://publications.nigms.nih.gov/biobeat/09-04-15/index.html#1 | William Bialek and Thomas Gregor, Princeton University | | | 229 | 24,153 | 235 | | 478 | 77,225 | 490 | Genes, Molecular Structures | | 4/16/2009 | April 15, 2009 Biomedical Beat | Thomas Gregor, Princeton University | | | Molecules blocking Huntington's protein production | Active | Photograph | | The molecules that glow blue in these cultured cells prevent the expression of the mutant proteins that cause Huntington's disease. Biochemist David Corey and others at UT Southwestern Medical Center designed the molecules to specifically target the genetic repeats that code for harmful proteins in people with Huntington's disese. People with Huntington's disease and similar neurodegenerative disorders often have extra copies of a gene segment. Moving from cell cultures to animals will help researchers further explore the potential of their specially crafted molecule to treat brain disorders. In addition to NIGMS, NIH's National Institute of Neurological Disorders and Stroke and National Institute of Biomedical Imaging and Bioengineering also funded this work. | | Jiaxin Hu, David W. Dodd and Robert H. E. Hudson, UT Southwestern Medical Center | 512 | 110,457 | 688 | | David Corey, UT Southwestern Medical Center | | | 123 | 6,565 | 165 | | 256 | 20,585 | 344 | Cells, Molecular Structures | | 6/19/2009 | Biomedical Beat: June 18, 2009 | Jiaxin Hu, David W. Dodd and Robert H. E. Hudson, UT Southwestern Medical Center | | | Mouse liver labeled with fluorescent probe | Active | Photograph | | A mouse liver glows after being tagged with specially designed infrared-fluorescent protein (IFP). Since its discovery in 1962, green fluorescent protein (GFP) has become an invaluable resource in biomedical imaging. But because of its short wavelength, the light that makes GFP glow doesn't penetrate far in whole animals. So University of California, San Diego cell biologist Roger Tsien--who shared the 2008 Nobel Prize in chemistry for groundbreaking work with GFP--made infrared-fluorescent proteins (IFPs) that shine under longer-wavelength light, allowing whole-body imaging in small animals. | | Xiaokun Shu, University of California, San Diego | 776 | 80,204 | 901 | | Roger Tsien, University of California, San Diego | | | 186 | 7,954 | 216 | | 388 | 21,277 | 451 | Cells, Molecular Structures, Tools and Techniques | | 6/19/2009 | Biomedical Beat: June 18, 2009 | Xiaokun Shu, University of California, San Diego | | | Induced stem cells from adult skin 02 | Active | Photograph | | These cells are induced stem cells made from human adult skin cells that were genetically reprogrammed to mimic embryonic stem cells. The induced stem cells were made potentially safer by removing the introduced genes and the viral vector used to ferry genes into the cells, a loop of DNA called a plasmid. The work was accomplished by geneticist Junying Yu in the laboratory of James Thomson, a University of Wisconsin-Madison School of Medicine and Public Health professor and the director of regenerative biology for the Morgridge Institute for Research. | | James Thomson, University of Wisconsin-Madison | 1,024 | 642,349 | 1,024 | | James Thomson, University of Wisconsin-Madison | | | 256 | 72,761 | 256 | | 512 | 169,510 | 512 | Cells, Genes | | 7/10/2009 | | James Thomson, University of Wisconsin-Madison | | | Induced stem cells from adult skin 01 | Active | Photograph | | These cells are induced stem cells made from human adult skin cells that were genetically reprogrammed to mimic embryonic stem cells. The induced stem cells were made potentially safer by removing the introduced genes and the viral vector used to ferry genes into the cells, a loop of DNA called a plasmid. The work was accomplished by geneticist Junying Yu in the laboratory of James Thomson, a University of Wisconsin-Madison School of Medicine and Public Health professor and the director of regenerative biology for the Morgridge Institute for Research. | | James Thomson, University of Wisconsin-Madison | 1,281 | 605,492 | 1,596 | | James Thomson, University of Wisconsin-Madison | | | 321 | 132,651 | 400 | | 642 | 308,237 | 800 | Cells, Genes | | 7/10/2009 | | James Thomson, University of Wisconsin-Madison | | | Induced stem cells from adult skin 03 | Active | Photograph | | The human skin cells pictured contain genetic modifications that make them pluripotent, essentially equivalent to embryonic stem cells. A scientific team from the University of Wisconsin-Madison including researchers Junying Yu, James Thomson, and their colleagues produced the transformation by introducing a set of four genes into human fibroblasts, skin cells that are easy to obtain and grow in culture. | | Junying Yu, University of Wisconsin-Madison | 3,216 | 2,704,759 | 3,600 | | James Thomson, University of Wisconsin-Madison | | | 804 | 77,061 | 900 | | 1,608 | 371,877 | 1,800 | Cells, Genes | | 7/10/2009 | | James Thomson, University of Wisconsin-Madison | | | Induced stem cells from adult skin 04 | Active | Photograph | | The human skin cells pictured contain genetic modifications that make them pluripotent, essentially equivalent to embryonic stem cells. A scientific team from the University of Wisconsin-Madison including researchers Junying Yu, James Thomson, and their colleagues produced the transformation by introducing a set of four genes into human fibroblasts, skin cells that are easy to obtain and grow in culture. | | Junying Yu, University of Wisconsin-Madison | 3,216 | 2,704,759 | 3,600 | | James Thomson, University of Wisconsin-Madison | | | 804 | 77,061 | 900 | | 1,608 | 371,877 | 1,800 | Cells, Genes | | 7/10/2009 | | James Thomson, University of Wisconsin-Madison | | | Mouse embryo showing Smad4 protein | Active | Photograph | | This eerily glowing blob isn't an alien or a creature from the deep sea--it's a mouse embryo just eight and a half days old. The green shell and core show a protein called Smad4. In the center, Smad4 is telling certain cells to begin forming the mouse's liver and pancreas. Researchers identified a trio of signaling pathways that help switch on Smad4-making genes, starting immature cells on the path to becoming organs. The research could help biologists learn how to grow human liver and pancreas tissue for research, drug testing and regenerative medicine. In addition to NIGMS, NIH's National Institute of Diabetes and Digestive and Kidney Diseases also supported this work. | | Kenneth Zaret, Fox Chase Cancer Center | 1,200 | 187,890 | 877 | | Kenneth Zaret, Fox Chase Cancer Center | | | 287 | 14,530 | 210 | | 601 | 42,784 | 439 | Cells, Molecular Structures | | 7/10/2009 | Biomedical Beat: July 15, 2009 | Kenneth Zaret, Fox Chase Cancer Center | | | Human embryonic stem cells | Active | Photograph | | The center cluster of cells, colored blue, shows a colony of human embryonic stem cells. These cells, which arise at the earliest stages of development, are capable of differentiating into any of the 220 types of cells in the human body and can provide access to cells for basic research and potential therapies. This image is from the lab of the University of Wisconsin-Madison's James Thomson. | | Clay Glennon, University of Wisconsin-Madison | 1,300 | 1,078,704 | 1,340 | | James Thomson, University of Wisconsin-Madison | | | 325 | 79,189 | 335 | | 650 | 212,974 | 670 | Cells | | 7/10/2009 | | James Thomson, University of Wisconsin-Madison | | | Telomeres | Active | Photograph | | The 46 human chromosomes are shown in blue, with the telomeres appearing as white pinpoints. The DNA has already been copied, so each chromosome is actually made up of two identical lengths of DNA, each with its own two telomeres. | | Hesed Padilla-Nash and Thomas Ried | 958 | 2,615,992 | 900 | From AZM. Padilla-Nash and Ried are NCI intramural researchers. Ried is the senior researcher. | Hesed Padilla-Nash and Thomas Ried, NCI | | | 240 | 25,372 | 225 | | 479 | 31,534 | 450 | Genes | | 7/13/2009 | - The Structures of Life chapter 5 (p. 65) - 2009 Nobel Laureate announcement - [2-10: being considered for new NIGMS mini-brochure] | Hesed Padilla-Nash and Thomas Ried, the National Cancer Institute, a part of NIH | | | Mitochondria and endoplasmic reticulum | Active | Illustration | | | | Bridget Wilson, University of New Mexico | 175 | 6,737 | 250 | | Bridget Wilson, University of New Mexico | | | 216 | 39,206 | 308 | | 88 | 2,866 | 125 | Cells, Tools and Techniques | | 7/28/2009 | Computing Life (online) 7/27/2009 | Bridget Wilson, University of New Mexico | | | Computer model of cell membrane | Active | Illustration | | | | Bridget Wilson, University of New Mexico | 482 | 32,304 | 641 | | Bridget Wilson, University of New Mexico | | | 116 | 6,305 | 154 | | 241 | 18,896 | 321 | Cells, Tools and Techniques | | 7/28/2009 | Computing Life (online) 7/27/2009 | Bridget Wilson, University of New Mexico | | | Endoplasmic reticulum | Active | Photograph | | Fluorescent markers show the interconnected web of tubes and compartments in the endoplasmic reticulum. The protein atlastin helps build and maintain this critical part of cells. The image is from a July 2009 <a href=http:// www.eurekalert.org/pub_releases/2009-07/ru-lpf072909.php target="_blank">news release</a>. | | Andrea Daga, Eugenio Medea Scientific Institute (Conegliano, Italy) | 400 | 35,445 | 400 | | Andrea Daga, Eugenio Medea Scientific Institute | | | 308 | 169,113 | 308 | | 200 | 20,312 | 200 | Cells | | 7/31/2009 | | Andrea Daga, Eugenio Medea Scientific Institute (Conegliano, Italy) | | | Activated mast cell surface | Active | Photograph | | A scanning electron microscope image of an activated mast cell. This image illustrates the interesting topography of the cell membrane, which is populated with receptors. The distribution of receptors may affect cell signaling. This image relates to a July 27, 2009 article in <a href=" https://www.nigms.nih.gov/education/Booklets/Computing-Life/Pages/Home.aspx"><em>Computing Life</em></a>. | | Bridget Wilson, University of New Mexico | 207 | 27,794 | 179 | | Bridget Wilson, University of New Mexico | | | 356 | 86,868 | 308 | | 104 | 5,326 | 90 | Cells, Tools and Techniques | | 7/28/2009 | Computing Life (online) 7/27/2009 | Bridget Wilson, University of New Mexico | | | Glowing fish | Active | Photograph | | | | Bob MacDonnell | 78 | 17,260 | 117 | | Marc Zimmer, Connecticut College | | | 205 | 32,006 | 308 | | 39 | 1,188 | 59 | Being a Scientist, Cells | | 8/3/2009 | Sept 2009 Findings | | | | GFP sperm | Active | Photograph | | Fruit fly sperm cells glow bright green when they express the gene for green fluorescent protein (GFP). | | Catherine Fernandez and Jerry Coyne | 1,033 | 203,479 | 1,315 | | | | | 258 | 34,883 | 329 | | 516 | 104,548 | 658 | Cells, Genes | | 8/4/2009 | The New Genetics | | | | Dicty fruit | Active | Photograph | | | | Rex Chisholm, Northwestern University | 2,701 | 1,246,223 | 2,080 | Alison Davis entered image. | | | | 675 | 12,903 | 519 | | 1,350 | 84,013 | 1,039 | Cells, Genes | | 8/4/2009 | The New Genetics | | | | Serratezomine A | Active | Illustration | | A 3-D model of the alkaloid serratezomine A shows the molecule's complex ring structure. | | Johnston Group | 344 | 12,721 | 400 | | | | | 265 | 64,978 | 308 | | 172 | 11,686 | 200 | Chemistry, Biochemistry, and Pharmacology | | 8/5/2009 | news release | | | | Dolly the sheep | Active | Photograph | | Scientists in Scotland were the first to clone an animal, this sheep named Dolly. She later gave birth to Bonnie, the lamb next to her. | | Roslin Institute, Edinburgh | 425 | 40,938 | 360 | | | | | 364 | 123,525 | 308 | | 213 | 20,452 | 180 | Cells, Genes, Tools and Techniques | | 8/5/2009 | The New Genetics | | | | Fruit fly in the pink | Active | Photograph | | Fruit flies are a common model organism for basic medical research. | | | 366 | 66,299 | 555 | Entered by Alison Davis. | | drosophila, research organism | | 92 | 13,483 | 139 | | 183 | 25,164 | 278 | Cells | | 8/5/2009 | The New Genetics Biobeat July 2009 | Crabtree + Company | | | Thermotoga maritima and its metabolic network | Active | Video | | A combination of protein structures determined experimentally and computationally shows us the complete metabolic network of a heat-loving bacterium. | | | | 6,749,332 | | | | bacteria, hyperthermophilic, toga, computer generated | | | | | | | | | Cells, Tools and Techniques | https://www.youtube.com/watch?v=o9eV7Eyw_tg | 9/17/2009 | Computing Life article | | | | Anchor cell in basement membrane | Active | Photograph | | An anchor cell (red) pushes through the basement membrane (green) that surrounds it. Some cells are able to push through the tough basement barrier to carry out important tasks--and so can cancer cells, when they spread from one part of the body to another. No one has been able to recreate basement membranes in the lab and they're hard to study in humans, so Duke University researchers turned to the simple worm <em>C. elegans</em>. The researchers identified two molecules that help certain cells orient themselves toward and then punch through the worm's basement membrane. Studying these molecules and the genes that control them could deepen our understanding of cancer spread. | | Elliott Hagedorn, Duke University | 271 | 68,909 | 695 | | David Sherwood, Duke University | fluorescence | | 65 | 3,051 | 167 | | 136 | 7,147 | 348 | Cells | | 9/22/2009 | Biomedical Beat: September 16, 2009 | Elliott Hagedorn, Duke University. | | | Leading cells with light | Active | Video | | A blue laser beam turns on a protein that helps this human cancer cell move. Responding to the stimulus, the protein, called Rac1, first creates ruffles at the edge of the cell. Then it stretches the cell forward, following the light like a horse trotting after a carrot on a stick. This new light-based approach can turn Rac1 (and potentially many other proteins) on and off at exact times and places in living cells. By manipulating a protein that controls movement, the technique also offers a new tool to study embryonic development, nerve regeneration and cancer. | | Yi Wu, University of North Carolina | | 2,421,268 | | | Klaus Hahn, University of North Carolina | | | | | | | | | | Cells, Tools and Techniques | https://www.youtube.com/watch?v=JiOBNOnvr6A | 10/2/2009 | September 16, 2009 Biomedical Beat | Yi Wu, University of North Carolina | | | Retroviruses as fossils | Active | Illustration | | DNA doesn't leave a fossil record in stone, the way bones do. Instead, the DNA code itself holds the best evidence for organisms' genetic history. Some of the most telling evidence about genetic history comes from retroviruses, the remnants of ancient viral infections. | | Emily Harrington | 1,350 | 3,334,997 | 2,320 | See <a href=http://scicom.ucsc.edu/SciNotes/0801/pages/virus/virus.html target="_blank">Science Notes</a> for the source of this image and a related article. <br></br> From 2008 Science Notes, UCSC Science Communication program http://scicom.ucsc.edu/SciNotes/0801/pages/virus/virus.html <br></br> From: Emily Harrington [ mailto:emilyharrington@hotmail.com] Sent: Wednesday, September 03, 2008 10:20 AM To: Muhammad, Janell (NIH/NIGMS) [C] Subject: RE: Image Request <br></br> Janell, I would be honored to have you use the image. I have attached a high res tif. As a side note: I am working with the Biomimicry Institute (biomimicryinstitute.org) and we are assembling a database of information and images. How do you track copyright information? Do you keep hard copies of correspondence or just load the permissions into the data fields? Any insight into what works in your process would be appreciated. Thanks so much, Emily | | retrovirus, RNA, genome | | 324 | 77,981 | 557 | | 675 | 309,183 | 1,160 | Genes | | | | Emily Harrington, science illustrator | | | Stretch detectors | Active | Video | | Muscles stretch and contract when we walk, and skin splits open and knits back together when we get a paper cut. To study these contractile forces, researchers built a three-dimensional scaffold that mimics tissue in an organism. Researchers poured a mixture of cells and elastic collagen over microscopic posts in a dish. Then they studied how the cells pulled and released the posts as they formed a web of tissue. To measure forces between posts, the researchers developed a computer model. Their findings--which show that contractile forces vary throughout the tissue--could have a wide range of medical applications. | | Christopher Chen, University of Pennsylvania | | 5,247,346 | | | Christopher Chen, University of Pennsylvania | | | | | | | | | | Cells | | 10/27/2009 | October 21, 2009 issue of Biomedical Beat | Christopher Chen, University of Pennsylvania | | | Mycobacterium tuberculosis | Active | Photograph | | | | David Russell, Cornell University | 2,400 | 1,176,682 | 2,192 | Note from Reuben Peters: Mycobacteria tuberculosis (Mtb) produces the diterpene edaxadiene (depicted in 3D), which acts to suppress maturation of Mtb containing phagosomes, such as that depicted (inset bottom). Intriguingly, M. bovis does not seem to have this capacity, which may provide a novel example of a species-specific virulence factor, as Mtb appears to be a more efficient human pathogen than M. bovis. I?ve also attached the original EM image (not colorized), which might help. Basically, the lysozymes are labelled with collodiol gold, while the Mtb are found as the electron dense bodies in other (non-maturing phagosomal) compartments. Hope this helps. http://publications.nigms.nih.gov/biobeat/09-11-18/index.html#5 | Reuben Peters, Iowa State University | TB, MTB, Bacteria, | | 600 | 238,954 | 548 | | 1,200 | 703,101 | 1,096 | Injury and Illness | | 11/23/2009 | November 2009 BB | Reuben Peters, Iowa State University | | | Blinking bacteria | Active | Video | | Like a pulsing blue shower, <em>E. coli</em> cells flash in synchrony. Genes inserted into each cell turn a fluorescent protein on and off at regular intervals. When enough cells grow in the colony, a phenomenon called quorum sensing allows them to switch from blinking independently to blinking in unison. Researchers can watch waves of light propagate across the colony. Adjusting the temperature, chemical composition or other conditions can change the frequency and amplitude of the waves. Because the blinks react to subtle changes in the environment, synchronized oscillators like this one could one day allow biologists to build cellular sensors that detect pollutants or help deliver drugs. | | Jeff Hasty, University of California, San Diego | | 2,639,985 | | | Jeff Hasty, University of California, San Diego | drug delivery, ecoli, Escherichia coli | | | | | | | | | Cells | | 2/1/2010 | Biomedical Beat-January 20, 2010 | Jeff Hasty, University of California, San Diego | | | Cryogenic storage tanks at the Coriell Institute for Medical Research | Active | Photograph | | Established in 1953, the Coriell Institute for Medical Research distributes cell lines and DNA samples to researchers around the world. Shown here are Coriell's cryogenic tanks filled with liquid nitrogen and millions of vials of frozen cells. | | Coriell Institute for Medical Research | 1,236 | 2,322,548 | 1,826 | | | cryotank, NMR, NMR spectroscopy, | | 309 | 94,447 | 457 | | 618 | 321,310 | 913 | Tools and Techniques | | 1/25/2010 | New Coriell contract release 1/25/2010 | Courtney Sill, Coriell Institute for Medical Research | | | Glow-in-the-dark salamanders | Active | Video | | These six-month-old axolotls, a kind of salamander, glow green and blue under ultraviolet light. That's because they were genetically modified to make harmless green fluorescent protein, or GFP. Like X-ray vision, GFP lets you see inside the axolotls as they hang out in their aquarium. GFP not only can reveal internal structures in living organisms, but it also can light up specific cells and even proteins within a cell. That allows scientists to identify and track things like cancer cells. | | Jill Grossman, Jamison Hermann and Marc Zimmer, Connecticut College | | 4,634,922 | | | Marc Zimmer, Connecticut College | research organism, axolotl, salamander | | 173 | 41,867 | 308 | | | | | Tools and Techniques | | 11/19/2009 | Nov 2009 Biobeat, Sep 2009 Findings | | | | iPS cell facility at the Coriell Institute for Medical Research | Active | Photograph | | This lab space was designed for work on the induced pluripotent stem (iPS) cell collection, part of the NIGMS Human Genetic Cell Repository at the Coriell Institute for Medical Research. | | Coriell Institute for Medical Research | 553 | 1,277,414 | 830 | | | iPSC | | 139 | 17,210 | 208 | | 277 | 281,325 | 415 | Being a Scientist | | 1/25/2010 | | Courtney Sill, Coriell Institute for Medical Research | | | Sponge | Active | Photograph | | Many of today's medicines come from products found in nature, such as this sponge found off the coast of Palau in the Pacific Ocean. Chemists have synthesized a compound called Palau'amine, which appears to act against cancer, bacteria and fungi. In doing so, they invented a new chemical technique that will empower the synthesis of other challenging molecules. | | Carlos Barbas, Scripps Research Institute | 371 | 88,096 | 660 | | | disease treatment, cure, treatment, medicine, sea, toxic alkaloid | | 89 | 7,178 | 158 | | 186 | 22,313 | 330 | Genes | | 2/18/2010 | Biomedical Beat: February 17, 2010 | Phil Baran, Scripps Research Institute | | | Proteins related to myotonic dystrophy | Active | Photograph | | Myotonic dystrophy is thought to be caused by the binding of a protein called Mbnl1 to abnormal RNA repeats. In these two images of the same muscle precursor cell, the top image shows the location of the Mbnl1 splicing factor (green) and the bottom image shows the location of RNA repeats (red) inside the cell nucleus (blue). The white arrows point to two large foci in the cell nucleus where Mbnl1 is sequestered with RNA. | | Hongqing Du, University of California, Santa Cruz | 543 | 105,068 | 938 | | Manuel Ares, University of California, Santa Cruz | DNA, ribonucleic acid, muscular dystrophy, genetic disorder | | 136 | 9,861 | 235 | | 272 | 45,326 | 469 | Cells | | 2/18/2010 | Biomedical Beat: February 17, 2010 | Manuel Ares, University of California, Santa Cruz | | | Supernova bacteria | Active | Photograph | | Bacteria engineered to act as genetic clocks flash in synchrony. Here, a "supernova" burst in a colony of coupled genetic clocks just after reaching critical cell density. Superimposed: A diagram from the notebook of Christiaan Huygens, who first characterized synchronized oscillators in the 17th century. | | Jeff Hasty, UCSD | 3,408 | 2,970,574 | 3,842 | | Jeff Hasty, UCSD | | | 818 | 246,615 | 922 | | 1,704 | 749,468 | 1,921 | Cells | | 2/4/2010 | Kim McDonald, UCSD PIO, gave permission to use in gallery (2/2/10 note to AZM). | Jeff Hasty, UCSD | | | Early development in Arabidopsis | Active | Photograph | | Early on, this <em>Arabidopsis</em> plant embryo picks sides: While one end will form the shoot, the other will take root underground. Short pieces of RNA in the bottom half (blue) make sure that shoot-forming genes are expressed only in the embryo's top half (green), eventually allowing a seedling to emerge with stems and leaves. Like animals, plants follow a carefully orchestrated polarization plan and errors can lead to major developmental defects, such as shoots above and below ground. Because the complex gene networks that coordinate this development in plants and animals share important similarities, studying polarity in <em>Arabidopsis</em>--a model organism--could also help us better understand human development. | | Zachery R. Smith, Jeff Long lab at the Salk Institute for Biological Studies | 216 | 30,687 | 260 | | Jeff Long, Salk Institute | research organism, rockcress, thale cress, genus, mustards, mouse-ear cress, arabidopsis thaliana | | 52 | 1,593 | 62 | | 108 | 3,374 | 130 | Genes | | 4/27/2010 | Biomedical Beat: April 21, 2010 | Zachery R. Smith, Jeff Long lab at the Salk Institute for Biological Studies | | | Network Map | Active | Photograph | | This network map shows the overlap (green) between the long QT syndrome (yellow) and epilepsy (blue) protein-interaction neighborhoods located within the human interactome. Researchers have learned to integrate genetic, cellular and clinical information to find out why certain medicines can trigger fatal heart arrhythmias. Featured in <a href=" https://www.nigms.nih.gov/education/Booklets/Computing-Life/Pages/Home.aspx"><em>Computing Life</em></a> magazine. | | Seth Berger, Mount Sinai School of Medicine | 777 | 193,781 | 776 | | Ravi Iyengar, Mount Sinai School of Medicine | chemical reaction, | | 186 | 18,794 | 186 | | 389 | 68,078 | 388 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 4/27/2010 | Computing Life 4/20/2010 | Seth Berger, Mount Sinai School of Medicine | | | Cytoscape network diagram 1 | Active | Illustration | | | | Keiichiro Ono, Trey Ideker lab, University of California, San Diego | 2,412 | 4,701,449 | 2,550 | Trey Ideker gave permission to use in gallery and in print and online publications (to Alisa, 4/22/2010). | Trey Ideker, University of California, San Diego | molecular interactions, genetic interactions, network wiring diagrams, Trey Ideker | | 601 | 176,505 | 636 | | 1,206 | 575,231 | 1,275 | Tools and Techniques | | 5/28/2010 | "Investing in Discovery" brochure | Keiichiro Ono, Trey Ideker lab, University of California, San Diego | | | Active site of sulfite oxidase | Active | Video | | Sulfite oxidase is an enzyme that is essential for normal neurological development in children. This video shows the active site of the enzyme and its molybdenum cofactor visible as a faint ball-and-stick representation buried within the protein. The positively charged channel (blue) at the active site contains a chloride ion (green) and three water molecules (red). As the protein oscillates, one can see directly down the positively charged channel. At the bottom is the molybdenum atom of the active site (light blue) and its oxo group (red) that is transferred to sulfite to form sulfate in the catalytic reaction. | | John Enemark, University of Arizona | | 1,250,549 | | JE offered video to AZM 6/10/2010: Our research on molybdenum enzymes, particularly sulfite oxidase, is supported under grant GM-037773. I have presented this video in seminars and at conferences, but it has not been published anywhere. The coordinates for calculating this video come from the crystal structure of the Mo Domain of recombinant chicken sulfite oxidase (PDB 2A99; E. Karakas, H. L. Wilson, T. N. Graf, S. Xiang, S. Jaramillo-Busquets, K. V. Rajagopalan and C. Kisker, J. Biol. Chem., 2005, 280, 33506?33515). The heme domain is somehow lost during preparation or crystallization, but the structure of the Mo domain is very similar to the native intact chicken enzyme (PDB 1SOX; C. Kisker, H. Schindelin, A. Pacheco, W. A. Wehbi, R. M. Garrett, K. V. Rajagopalan, J. H. Enemark and D. C. Rees, Cell, 1997, 91, 973?983). The chicken enzyme has high sequence homology to the human enzyme, which has not been successfully crystallized. | John Enemark, University of Arizona | | | | | | | | | | Cells, Chemistry, Biochemistry, and Pharmacology | | 6/11/2010 | | John Enemark, University of Arizona | | | Early life of a protein | Active | Illustration | | This illustration represents the early life of a protein—specifically, apomyoglobin—as it is synthesized by a ribosome and emerges from the ribosomal tunnel, which contains the newly formed protein's conformation. The synthesis occurs in the complex swirl of the cell medium, filled with interactions among many molecules. Researchers in Silvia Cavagnero's laboratory are studying the structure and dynamics of newly made proteins and polypeptides using spectroscopic and biochemical techniques. | | Silvia Cavagnero, University of Wisconsin, Madison | 1,208 | 766,784 | 2,537 | SC wrote to AZM 6/9/2010. The image shows ribosome-bound nascent chains and full-length newly synthesized apomyoglobin, a protein bearing the ubiquitous globin fold, which is found in many living organisms, including humans. The ribosome-bound chain lengths illustrate the low-resolution conformation of nascent apomyoglobin bearing 16, 35, 89 and 153 amino acids. The ribosome-released protein illustrates the conformation of full-length native apomyoglobin (153 residues). The blue swirl represents the artist's rendition of the complex cellular medium surrounding all newly synthesized protein chains in the cell's cytoplasm. This medium is characterized by a high degree of molecular crowding, by miriads of intra-/inter-molecular-interactions, and by the presence of molecular helpers including moelecular chaperones such as the members of the Hsp70 protein family. | Silvia Cavagnero, University of Wisconsin, Madison | protein structure, biochemistry, globin fold, | | 290 | 56,917 | 609 | | 604 | 203,545 | 1,269 | Cells, Molecular Structures | | 6/10/2010 | | Silvia Cavagnero, University of Wisconsin, Madison | | | Dynamin structure | Active | Illustration | | When a molecule arrives at a cell's outer membrane, the membrane creates a pouch around the molecule that protrudes inward. Directed by a protein called dynamin, the pouch then gets pinched off to form a vesicle that carries the molecule to the right place inside the cell. To better understand how dynamin performs its vital pouch-pinching role, researchers determined its structure. Based on the structure, they proposed that a dynamin "collar" at the pouch's base twists ever tighter until the vesicle pops free. Because cells absorb many drugs through vesicles, the discovery could lead to new drug delivery methods. | | Josh Chappie, National Institute of Diabetes and Digestive and Kidney Diseases, NIH | 284 | 53,617 | 308 | | Sandra Schmid, The Scripps Research Institute | GTPase, plasma membrane, cell membrane, endocytosis, protein structure | | 284 | 53,617 | 308 | | 284 | 53,617 | 308 | Cells | | 6/10/2010 | Biomedical Beat: May 19, 2010 | Josh Chappie, National Institute of Diabetes and Digestive and Kidney Diseases, NIH | | | Tetrapolar mitosis | Active | Photograph | | This image shows an abnormal, tetrapolar mitosis. Chromosomes are highlighted pink. The cells shown are S3 tissue cultured cells from <i>Xenopus laevis</i>, African clawed frog. | | Tamara Potapova and Gary Gorbsky, Oklahoma Medical Research Foundation | 1,500 | 251,825 | 1,500 | Gary Gorbsky wrote to Alisa 6/4/2010 to offer image and video. Tamara Potapova is a postdoc in his lab. | Gary Gorbsky, Oklahoma Medical Research Foundation | cell division, mitosis, cell cycle, abnormal mitosis, abnormal cell division | | 360 | 32,086 | 360 | | 750 | 98,322 | 750 | Cells | | 6/7/2010 | | Gary Gorbsky, Oklahoma Medical Research Foundation | | | Molecular interactions | Active | Illustration | | This network map shows molecular interactions (yellow) associated with a congenital condition that causes heart arrhythmias and the targets for drugs that alter these interactions (red and blue). | | Seth Berger, Mount Sinai School of Medicine | 850 | 363,284 | 881 | | Ravi Iyengar, Mount Sinai School of Medicine | systems biology, medicinces, cardiac disorders, drug targeting, drug delivery | | 204 | 23,438 | 211 | | 425 | 88,213 | 441 | Molecular Structures | | 6/10/2010 | Biomedical Beat: May 19, 2010 | Ravi Iyengar, Mount Sinai School of Medicine | | | Nucleosome | Active | Illustration | | Like a strand of white pearls, DNA wraps around an assembly of special proteins called histones (colored) to form the nucleosome, a structure responsible for regulating genes and condensing DNA strands to fit into the cell's nucleus. Researchers once thought that nucleosomes regulated gene activity through their histone tails (dotted lines), but a 2010 study revealed that the structures' core also plays a role. The finding sheds light on how gene expression is regulated and how abnormal gene regulation can lead to cancer. | | Karolin Luger, Colorado State University | 695 | 174,353 | 836 | | Karolin Luger, Colorado State University | DNA, DNA packaging, genetics, proteins, cell | | 167 | 13,079 | 201 | | 348 | 43,378 | 418 | Cells, Genes, Molecular Structures | | 6/10/2010 | Biomedical Beat: May 19, 2010 | Karolin Luger, Colorado State University | | | Cell division with late aligning chromosomes | Active | Video | | This video shows an instance of abnormal mitosis where chromosomes are late to align. The video demonstrates the spindle checkpoint in action: just one unaligned chromosome can delay anaphase and the completion of mitosis. The cells shown are S3 tissue cultured cells from <i>Xenopus laevis</i>, African clawed frog. | | John Daum and Gary Gorbsky, Oklahoma Medical Research Foundation | | 4,186,649 | | Filmed by lab manager, John Daum. Gorbsky wrote to Alisa 6/4/2010. | Gary Gorbsky, Oklahoma Medical Research Foundation | late-aligning, delayed chromosome alignment | | 235 | 62,877 | 308 | | | | | Cells | | 6/11/2010 | | Gary Gorbsky, Oklahoma Medical Research Foundation | | | Early ribbon drawing of a protein | Active | Illustration | | This ribbon drawing of a protein hand drawn and colored by researcher Jane Richardson in 1981 helped originate the ribbon representation of proteins that is now ubiquitous in molecular graphics. The drawing shows the 3-dimensional structure of the protein triose phosphate isomerase. The green arrows represent the barrel of eight beta strands in this structure and the brown spirals show the protein's eight alpha helices. A black and white version of this drawing originally illustrated a <a href=http://kinemage.biochem.duke.edu/teaching/anatax target="_blank">review article</a> in <i>Advances in Protein Chemistry</i>, volume 34, titled "Anatomy and Taxonomy of Protein Structures." The illustration was selected as Picture of The Day on the English Wikipedia for November 19, 2009. Other important and beautiful images of protein structures by Jane Richardson are available in her <a href=http://commons.wikimedia.org/wiki/User:Dcrjsr/gallery_of_protein_structure target="_blank">Wikimedia gallery</a>. | | Jane Richardson, Duke University Medical Center | 2,264 | 7,149,652 | 2,980 | Jane Richardson wrote to Alisa M. on 6/4/2010 to offer use of this and other images. | Jane Richardson, Duke University Medical Center | Enzyme, TPI, TIM, 3D structire, three-dimensional, protein structure, molecular structure | | 566 | 925,375 | 745 | | 1,132 | 3,193,935 | 1,490 | Molecular Structures | | 6/18/2010 | | Jane Richardson, Duke University Medical Center | | | Cytoscape network wiring diagram 2 | Active | Illustration | | This image integrates the thousands of known molecular and genetic interactions happening inside our bodies using a computer program called Cytoscape. Images like this are known as network wiring diagrams, but Cytoscape creator Trey Ideker somewhat jokingly calls them "hairballs" because they can be so complicated, intricate and hard to tease apart. Cytoscape comes with tools to help scientists study specific interactions, such as differences between species or between sick and diseased cells. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2737">2737</a>. | | Keiichiro Ono, University of California, San Diego | 1,347 | 520,768 | 1,347 | | Trey Ideker, University of California, San Diego | molecular biology, biologists, bioinformatics, bioinformatics software, molecular interaction networks, genetic interactions, gene expression | | 339 | 89,423 | 339 | | 678 | 250,752 | 678 | Tools and Techniques | | 6/23/2010 | Biomedical Beat: June 16, 2010 | Trey Ideker, University of California, San Diego | | | Antibodies in silica honeycomb | Active | Illustration | | Antibodies are among the most promising therapies for certain forms of cancer, but patients must take them intravenously, exposing healthy tissues to the drug and increasing the risk of side effects. A team of biochemists packed the anticancer antibodies into porous silica particles to deliver a heavy dose directly to tumors in mice. | | Chenghong Lei, Pacific Northwest National Laboratory | 1,200 | 289,318 | 1,500 | | Chenghong Lei, PNNL & Karl Erik Hellstrom, University of WA | Antibody, Biochemistry, Biochemical, Drug Delivery, Immune System | | 300 | 23,914 | 375 | | 600 | 95,815 | 750 | Chemistry, Biochemistry, and Pharmacology | | 6/23/2010 | Biomedical Beat: June 16, 2010 | Chenghong Lei, Pacific Northwest National Laboratory & Karl Erik Hellstrom, University of Washington | | | Xenopus laevis egg | Active | Photograph | | <i>Xenopus laevis</i>, the African clawed frog, has long been used as a model organism for studying embryonic development. In this image, RNA encoding the transcription factor Sox 7 (dark blue) is shown to predominate at the vegetal pole, the yolk-rich portion, of a <i>Xenopus laevis</i> frog egg. Sox 7 protein is important to the regulation of embryonic development. | | Michael Klymkowsky, University of Colorado, Boulder | 608 | 635,855 | 811 | AZM obtained this image from Dr. Klymkowsky in response to her FL post request | Michael Klymkowsky, University of Colorado, Boulder | Research Organism, ribonucleic acid, ovum, embryo | | 152 | 9,036 | 203 | | 304 | 228,040 | 406 | Genes | | 7/12/2010 | | Michael Klymkowsky, University of Colorado, Boulder | | | Bacterial spore | Active | Photograph | | A spore from the bacterium <i>Bacillus subtilis</i> shows four outer layers that protect the cell from harsh environmental conditions. | | Patrick Eichenberger, New York University | 650 | 42,597 | 749 | | Patrick Eichenberger, New York University | Cell structure, | | 156 | 8,321 | 180 | | 325 | 23,845 | 375 | Cells | | 6/30/2010 | Findings Just Found Sept 2010 | Patrick Eichenberger, New York University | | | Myosin V binding to actin | Active | Illustration | | This simulation of myosin V binding to actin was created using the software tool Protein Mechanica. With Protein Mechanica, researchers can construct models using information from a variety of sources: crystallography, cryo-EM, secondary structure descriptions, as well as user-defined solid shapes, such as spheres and cylinders. The goal is to enable experimentalists to quickly and easily simulate how different parts of a molecule interact. | | David Parker and Simbios, the National Center for Physics-based Simulation of Biological Structures | 966 | 243,661 | 1,280 | Software tool developed by Simbios student David Parker. Simbios, the National Center for Physics-based Simulation of Biological Structures Image and info from: Kathy Miller Managing Editor Biomedical Computation Review 6503239374 www.biomedicalcomputationreview.org ksmiller@stanford.edu | | computer generated, computer-generated, model | | 232 | 14,524 | 307 | | 483 | 50,734 | 640 | Tools and Techniques | | 7/12/2010 | | Simbios, NIH Center for Biomedical Computation at Stanford | | | Cross section of a Drosophila melanogaster pupa | Active | Photograph | | This photograph shows a magnified view of a <i>Drosophila melanogaster</i> pupa in cross section. Compare this normal pupa to one that lacks an important receptor, shown in image 2759. | | Christina McPhee and Eric Baehrecke, University of Massachusetts Medical School | 500 | 78,757 | 592 | Reference: Nature. 2010 Jun 24;465(7301):1093-6 | Eric Baehrecke, University of Massachusetts Medical School | fruit fly, model organism, Draper, engulfment receptor, salivary gland cells | | 125 | 16,113 | 148 | | 250 | 46,049 | 296 | Cells, Genes | | 7/12/2010 | | Christina McPhee and Eric Baehrecke, University of Massachusetts Medical School | | | Nucleolinus | Active | Photograph | | The nucleolinus is a cellular compartment that has been a lonely bystander in scientific endeavors. Although it's found in a range of species, its function has been mysterious—mainly because the structure is hard to visualize. An August 2010 study showed that the nucleolinus is crucial for cell division. When researchers zapped the structure with a laser, an egg cell didn't complete division. When the oocyte was fertilized after laser microsurgery (bottom right), the resulting zygote didn't form vital cell division structures (blue and yellow). | | Mary Anne Alliegro, Marine Biological Laboratory | 1,286 | 149,422 | 1,200 | | Mary Anne Alliegro, Marine Biological Laboratory | organelle, RNA, nucleolus, spindle, centrosomes | | 309 | 11,207 | 288 | | 643 | 37,984 | 600 | Cells | | 8/20/2010 | Biomedical Beat- August 18, 2010 | Mary Anne Alliegro, Marine Biological Laboratory | | | Fused, dicentric chromosomes | Active | Photograph | | This fused chromosome has two functional centromeres, shown as two sets of red and green dots. Centromeres are DNA/protein complexes that are key to splitting the chromosomes evenly during cell division. When dicentric chromosomes like this one are formed in a person, fertility problems or other difficulties may arise. Normal chromosomes carrying a single centromere (one set of red and green dots) are also visible in this image. | | Beth A. Sullivan, Duke University | 3,090 | 172,754 | 2,100 | | Beth A. Sullivan, Duke University | | | 453 | 85,925 | 308 | | 1,545 | 101,781 | 1,050 | Cells, Genes | | 9/3/2010 | | Beth A. Sullivan, Duke University | | | Draper, shown in the fatbody of a Drosophila melanogaster larva | Active | Photograph | | The fly fatbody is a nutrient storage and mobilization organ akin to the mammalian liver. The engulfment receptor Draper (green) is located at the cell surface of fatbody cells. The cell nuclei are shown in blue. | | Christina McPhee and Eric Baehrecke, University of Massachusetts Medical School | 690 | 82,515 | 926 | Reference: Nature. 2010 Jun 24;465(7301):1093-6 | Eric Baehrecke, University of Massachusetts Medical School | research organism, fruit fly, cell-surface receptot | | 173 | 15,237 | 232 | | 345 | 43,131 | 463 | Cells | | 7/12/2010 | | Christina McPhee and Eric Baehrecke, University of Massachusetts Medical School | | | Xenopus laevis embryos | Active | Photograph | | <i>Xenopus laevis</i>, the African clawed frog, has long been used as a model organism for studying embryonic development. The frog embryo on the left lacks the developmental factor Sizzled. A normal embryo is shown on the right. | | Michael Klymkowsky, University of Colorado, Boulder | 984 | 1,250,822 | 810 | AZM obtained this image from Dr. Klymkowsky in response to her FL request | Michael Klymkowsky, University of Colorado, Boulder | research organism, genes, developmental syndromes | | 246 | 21,077 | 203 | | 492 | 422,928 | 405 | Genes | | 7/12/2010 | | Michael Klymkowsky, University of Colorado, Boulder | | | Two-headed Xenopus laevis tadpole | Active | Photograph | | <i>Xenopus laevis</i>, the African clawed frog, has long been used as a research organism for studying embryonic development. The abnormal presence of RNA encoding the signaling molecule plakoglobin causes atypical signaling, giving rise to a two-headed tadpole. | | Michael Klymkowsky, University of Colorado, Boulder | 701 | 994,709 | 810 | AZM obtained this image from Dr. Klymkowsky in response to her FL post request | Michael Klymkowsky, University of Colorado, Boulder | research organism, proteins, embryo, protein-coding, genes, DNA | | 176 | 91,921 | 203 | | 351 | 326,058 | 405 | Genes | | 7/12/2010 | | Michael Klymkowsky, University of Colorado, Boulder | | | Cross section of a Drosophila melanogaster pupa lacking Draper | Active | Photograph | | In the absence of the engulfment receptor Draper, salivary gland cells (light blue) persist in the thorax of a developing <i>Drosophila melanogaster</i> pupa. See image 2758 for a cross section of a normal pupa that does express Draper. | | Christina McPhee and Eric Baehrecke, University of Massachusetts Medical School | 500 | 75,672 | 585 | Reference: Nature. 2010 Jun 24;465(7301):1093-6 | Eric Baehrecke, University of Massachusetts Medical School | | | 125 | 15,818 | 147 | | 250 | 44,680 | 293 | Cells, Genes | | 7/12/2010 | | Christina McPhee and Eric Baehrecke, University of Massachusetts Medical School | | | Research mentor and student | Active | Photograph | | A research mentor (Lori Eidson) and student (Nina Waldron, on the microscope) were 2009 members of the BRAIN (Behavioral Research Advancements In Neuroscience) program at Georgia State University in Atlanta. This program is an undergraduate summer research experience funded in part by NIGMS. | | Meg Buscema, Georgia State University | 448 | 43,862 | 673 | From: Elizabeth Weaver [ mailto:weaver31@me.com] Sent: Friday, July 23, 2010 12:09 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E]; kyle frantz Subject: B.R.A.I.N. Research Photo for NIGMS Call for Photos My name is Elizabeth Weaver and I coordinate the B.R.A.I.N. (Behavioral Research Advancements In Neuroscience) program at Georgia State University. This program is an undergraduate summer research experience initiated by the Center for Behavioral Neuroscience here in Atlanta and is funded in part by NIGMS. We have been running this successful program for over 5 years now! NIGMS funds half of the program costs and 100% of the program evaluation costs, so it is a huge contributer. Meg Buscema, Georgia State University took this photo and you have permission to use it. Thank you! Liz Research Mentor (Lori Eidson) and BRAIN Student 2009 (Nina Waldron, on the scope) | | mentorship, teacher, student, mentee, researcher, female | | 205 | 90,944 | 308 | | 224 | 28,056 | 337 | Being a Scientist, Tools and Techniques | | 9/15/2010 | | Elizabeth Weaver, Georgia State University | | | Mature, flowering Arabidopsis | Active | Photograph | | This is an adult flowering <i>Arabidopsis thaliana</i> plant with the inbred designation L-er. Arabidopsis is the most widely used model organism for researchers who study plant genetics. | | Jeff Dangl, University of North Carolina, Chapel Hill | 1,992 | 320,216 | 901 | | Jeff Dangl, University of North Carolina, Chapel Hill | research organism, Ler, thale cress, mouse-ear cress | | 499 | 38,591 | 226 | | 999 | 61,248 | 452 | Genes | | 11/19/2010 | | Jeff Dangl, University of North Carolina, Chapel Hill | | | Arabidopsis leaf injected with a pathogen | Active | Photograph | | This is a magnified view of an <i>Arabidopsis thaliana</i> leaf eight days after being infected with the pathogen <i>Hyaloperonospora arabidopsidis</i>, which is closely related to crop pathogens that cause 'downy mildew' diseases. It is also more distantly related to the agent that caused the Irish potato famine. The veins of the leaf are light blue; in darker blue are the pathogen's hyphae growing through the leaf. The small round blobs along the length of the hyphae are called haustoria; each is invading a single plant cell to suck nutrients from the cell. Jeff Dangl and other NIGMS-supported researchers investigate how this pathogen and other like it use virulence mechanisms to suppress host defense and help the pathogens grow. | | Jeff Dangl, University of North Carolina, Chapel Hill | 1,033 | 160,749 | 1,315 | | Jeff Dangl, University of North Carolina, Chapel Hill | Research organism, parasite, oomycete microbes, microscope, microscopy, thale cress, mouse-ear cress | | 258 | 34,247 | 329 | | 516 | 112,060 | 658 | Cells, Genes | | 11/19/2010 | | Jeff Dangl, University of North Carolina, Chapel Hill | | | Self-organizing proteins | Active | Photograph | | Under the microscope, an <em>E. coli</em> cell lights up like a fireball. Each bright dot marks a surface protein that tells the bacteria to move toward or away from nearby food and toxins. Using a new imaging technique, researchers can map the proteins one at a time and combine them into a single image. This lets them study patterns within and among protein clusters in bacterial cells, which don't have nuclei or organelles like plant and animal cells. Seeing how the proteins arrange themselves should help researchers better understand how cell signaling works. | | Derek Greenfield and Ann McEvoy, University of California, Berkeley | 400 | 91,034 | 400 | | Jan Liphardt, University of California, Berkeley | microscopy, disease, bacteria, Escherichia coli | | 96 | 4,265 | 96 | | 200 | 12,606 | 200 | Molecular Structures, Tools and Techniques | | 9/15/2010 | Featured in the August 19, 2009, issue of Biomedical Beat | | | | Disease-resistant Arabidopsis leaf | Active | Photograph | | This is a magnified view of an <i>Arabidopsis thaliana</i> leaf a few days after being exposed to the pathogen <i>Hyaloperonospora arabidopsidis</i>. The plant from which this leaf was taken is genetically resistant to the pathogen. The spots in blue show areas of localized cell death where infection occurred, but it did not spread. Compare this response to that shown in Image 2782. Jeff Dangl has been funded by NIGMS to study the interactions between pathogens and hosts that allow or suppress infection. | | Jeff Dangl, University of North Carolina, Chapel Hill | 1,033 | 93,036 | 1,315 | | Jeff Dangl, University of North Carolina, Chapel Hill | research organism, parasite, downy mildew, oomycete microbes, peronosporaceae, thale cress, mouse-ear cress | | 248 | 15,869 | 316 | | 517 | 50,925 | 658 | Cells, Genes | | 12/10/2010 | | Jeff Dangl, University of North Carolina, Chapel Hill | | | Painted chromosomes | Active | Photograph | | Like a paint-by-numbers picture, painted probes tint individual human chromosomes by targeting specific DNA sequences. Chromosome 13 is colored green, chromosome 14 is in red and chromosome 15 is painted yellow. The image shows two examples of fused chromosomes—a pair of chromosomes 15 connected head-to-head (yellow dumbbell-shaped structure) and linked chromosomes 13 and 14 (green and red dumbbell). These fused chromosomes—called dicentric chromosomes—may cause fertility problems or other difficulties in people. | | Beth A. Sullivan, Duke University | 2,330 | 170,449 | 3,000 | | Beth A. Sullivan, Duke University | deoxyribonucleic acid, nuclear DNA, microscopy | | 239 | 43,794 | 308 | | 1,165 | 82,239 | 1,500 | Cells, Genes | | 9/3/2010 | Twitpic | Beth A. Sullivan, Duke University | | | Disease-susceptible Arabidopsis leaf | Active | Photograph | | This is a magnified view of an <i>Arabidopsis thaliana</i> leaf after several days of infection with the pathogen <i>Hyaloperonospora arabidopsidis</i>. The pathogen's blue hyphae grow throughout the leaf. On the leaf's edges, stalk-like structures called sporangiophores are beginning to mature and will release the pathogen's spores. Inside the leaf, the large, deep blue spots are structures called oopsorangia, also full of spores. Compare this response to that shown in Image 2781. Jeff Dangl has been funded by NIGMS to study the interactions between pathogens and hosts that allow or suppress infection. | | Jeff Dangl, University of North Carolina, Chapel Hill | 1,033 | 171,236 | 1,315 | | Jeff Dangl, University of North Carolina, Chapel Hill | research organism, thale cress, mouse-ear cress, parasite, downy mildew, oomycete microbes, peronosporaceae, plant disease | | 248 | 30,468 | 316 | | 517 | 91,540 | 658 | Genes, Molecular Structures | | 12/10/2010 | | Jeff Dangl, University of North Carolina, Chapel Hill | | | Anti-tumor drug ecteinascidin 743 (ET-743) with hydrogens 01 | Active | Illustration | | Ecteinascidin 743 (ET-743, brand name Yondelis), was discovered and isolated from a sea squirt, <i>Ecteinascidia turbinata</i>, by NIGMS grantee Kenneth Rinehart at the University of Illinois. It was synthesized by NIGMS grantees E.J. Corey and later by Samuel Danishefsky. Multiple versions of this structure are available as entries 2790-2797. | | Timothy Jamison, Massachusetts Institute of Technology | 816 | 42,696 | 922 | obtained by AZM from Timothy Jamison in January 2011 for a Web banner | | drug design, treatment, trabectedin, antitumor, chemotherapy drug, chemo, sarcoma, soft-tissue sarcoma | | 195 | 7,036 | 220 | | 408 | 17,706 | 461 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 1/19/2011 | | Timothy Jamison, Massachusetts Institute of Technology | | | Microtubule dynamics in real time | Active | Video | | Cytoplasmic linker protein (CLIP)-170 is a microtubule plus-end-tracking protein that regulates microtubule dynamics and links microtubule ends to different intracellular structures. In this movie, the gene for CLIP-170 has been fused with green fluorescent protein (GFP). When the protein is expressed in cells, the activities can be monitored in real time. Here, you can see CLIP-170 streaming towards the edges of the cell. | | Gary Borisy, Marine Biology Laboratory | | 394,051 | | | Gary Borisy, Marine Biology Laboratory | tubulin, cytoskeleton, eukaryotic cells | | 308 | 62,241 | 308 | | | | | Cells, Molecular Structures | | 12/21/2010 | | Gary Borisy, Marine Biology Laboratory | | | Anti-tumor drug ecteinascidin 743 (ET-743) with hydrogens 02 | Active | Illustration | | Ecteinascidin 743 (ET-743, brand name Yondelis), was discovered and isolated from a sea squirt, <i>Ecteinascidia turbinata</i>, by NIGMS grantee Kenneth Rinehart at the University of Illinois. It was synthesized by NIGMS grantees E.J. Corey and later by Samuel Danishefsky. Multiple versions of this structure are available as entries 2790-2797. | | Timothy Jamison, Massachusetts Institute of Technology | 829 | 38,630 | 923 | obtained by AZM from Timothy Jamison in January 2011 for a Web banner | | drug design, treatment, trabectedin, antitumor, chemotherapy drug, chemo, sarcoma, soft-tissue sarcoma | | 199 | 5,858 | 222 | | 414 | 14,929 | 461 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 1/19/2011 | | Timothy Jamison, Massachusetts Institute of Technology | | | Anti-tumor drug ecteinascidin 743 (ET-743) with hydrogens 03 | Active | Illustration | | Ecteinascidin 743 (ET-743, brand name Yondelis), was discovered and isolated from a sea squirt, <i>Ecteinascidia turbinata</i>, by NIGMS grantee Kenneth Rinehart at the University of Illinois. It was synthesized by NIGMS grantees E.J. Corey and later by Samuel Danishefsky. Multiple versions of this structure are available as entries 2790-2797. | | Timothy Jamison, Massachusetts Institute of Technology | 781 | 43,227 | 922 | obtained by AZM from Timothy Jamison in January 2011 for a Web banner | | drug design, treatment, trabectedin, antitumor, chemotherapy drug, chemo, sarcoma, soft-tissue sarcoma | | 187 | 7,091 | 220 | | 390 | 17,911 | 461 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 1/19/2011 | | Timothy Jamison, Massachusetts Institute of Technology | | | Anti-tumor drug ecteinascidin 743 (ET-743) with hydrogens 04 | Active | Illustration | | Ecteinascidin 743 (ET-743, brand name Yondelis), was discovered and isolated from a sea squirt, <i>Ecteinascidia turbinata</i>, by NIGMS grantee Kenneth Rinehart at the University of Illinois. It was synthesized by NIGMS grantees E.J. Corey and later by Samuel Danishefsky. Multiple versions of this structure are available as entries 2790-2797. | | Timothy Jamison, Massachusetts Institute of Technology | 774 | 37,209 | 922 | obtained by AZM from Timothy Jamison in January 2011 for a Web banner | | drug design, treatment, trabectedin, antitumor, chemotherapy drug, chemo, sarcoma, soft-tissue sarcoma | | 185 | 5,621 | 220 | | 387 | 14,521 | 461 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 1/19/2011 | | Timothy Jamison, Massachusetts Institute of Technology | | | Anti-tumor drug ecteinascidin 743 (ET-743), structure without hydrogens 01 | Active | Illustration | | Ecteinascidin 743 (ET-743, brand name Yondelis), was discovered and isolated from a sea squirt, <i>Ecteinascidia turbinata</i>, by NIGMS grantee Kenneth Rinehart at the University of Illinois. It was synthesized by NIGMS grantees E.J. Corey and later by Samuel Danishefsky. Multiple versions of this structure are available as entries 2790-2797. | | Timothy Jamison, Massachusetts Institute of Technology | 799 | 32,646 | 923 | obtained by AZM from Timothy Jamison in January 2011 for a Web banner | | drug design, treatment, trabectedin, antitumor, chemotherapy drug, chemo, sarcoma, soft-tissue sarcoma | | 192 | 5,205 | 222 | | 399 | 13,291 | 461 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 1/19/2011 | | Timothy Jamison, Massachusetts Institute of Technology | | | Anti-tumor drug ecteinascidin 743 (ET-743), structure without hydrogens 02 | Active | Illustration | | Ecteinascidin 743 (ET-743, brand name Yondelis), was discovered and isolated from a sea squirt, <i>Ecteinascidia turbinata</i>, by NIGMS grantee Kenneth Rinehart at the University of Illinois. It was synthesized by NIGMS grantees E.J. Corey and later by Samuel Danishefsky. Multiple versions of this structure are available as entries 2790-2797. | | Timothy Jamison, Massachusetts Institute of Technology | 815 | 29,763 | 922 | obtained by AZM from Timothy Jamison in January 2011 for a Web banner | | drug design, treatment, trabectedin, antitumor, chemotherapy drug, chemo, sarcoma, soft-tissue sarcoma | | 195 | 4,169 | 220 | | 407 | 10,997 | 461 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 1/19/2011 | | Timothy Jamison, Massachusetts Institute of Technology | | | Anti-tumor drug ecteinascidin 743 (ET-743), structure without hydrogens 03 | Active | Illustration | | Ecteinascidin 743 (ET-743, brand name Yondelis), was discovered and isolated from a sea squirt, <i>Ecteinascidia turbinata</i>, by NIGMS grantee Kenneth Rinehart at the University of Illinois. It was synthesized by NIGMS grantees E.J. Corey and later by Samuel Danishefsky. Multiple versions of this structure are available as entries 2790-2797. | | Timothy Jamison, Massachusetts Institute of Technology | 833 | 35,144 | 923 | obtained by AZM from Timothy Jamison in January 2011 for a Web banner | | drug design, treatment, trabectedin, antitumor, chemotherapy drug, chemo, sarcoma, soft-tissue sarcoma | | 200 | 5,645 | 222 | | 416 | 14,143 | 461 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 1/19/2011 | | Timothy Jamison, Massachusetts Institute of Technology | | | Microtubule growth | Active | Illustration | | | | Gaudenz Danuser, Harvard Medical School | 1,205 | 559,338 | 1,055 | 3/4/11- Obtained by Jim Deatherage, who requested its use in the image gallery and for use in Common Fund (Roadmap) Single Cell Analysis initiative postings and publicity. | Gaudenz Danuser, Harvard Medical School | Fluorescent speckle microscopy, FSM, single cell analysis, cellular functionality, cell function,cell process, cell processes, proteins, cytoskeletal filaments, macromolecular dynamics, living cells, tubulin, cytoskeletin | | 301 | 13,405 | 263 | | 602 | 75,868 | 527 | Cells | | 3/30/2011 | | Gaudenz Danuser, Harvard Medical School | | | Trajectories of labeled cell receptors | Active | Illustration | | | | Gaudenz Danuser, Harvard Medical School | 650 | 270,235 | 650 | 3/4/11- Obtained by Jim Deatherage, who requested its use in the image gallery and for use in Common Fund (Roadmap) Single Cell Analysis initiative postings and publicity. | Gaudenz Danuser, Harvard Medical School | Fluorescent speckle microscopy, FSM, single cell analysis, cellular functionality, cell function,cell process, cell processes, proteins, macromolecular dynamics, living cells, membrane receptors, plasma membrane, proteins, cell surface receptor | | 163 | 48,605 | 163 | | 325 | 102,852 | 325 | Cells, Molecular Structures | | 3/30/2011 | | Gaudenz Danuser, Harvard Medical School | | | Actin flow | Active | Photograph | | | | Gaudenz Danuser, Harvard Medical School | 738 | 570,832 | 2,697 | 3/4/11- Obtained by Jim Deatherage, who requested its use in the image gallery and for use in Common Fund (Roadmap) Single Cell Analysis initiative postings and publicity. | Gaudenz Danuser, Harvard Medical School | Fluorescent speckle microscopy, FSM, Cell, cell process, cell processes, proteins, cytoskeletal filaments, macromolecular dynamics, living cells | | 184 | 20,778 | 672 | | 368 | 105,758 | 1,348 | Cells | | 3/30/2011 | | Gaudenz Danuser, Harvard Medical School | | | Anti-tumor drug ecteinascidin 743 (ET-743), structure without hydrogens 04 | Active | Illustration | | Ecteinascidin 743 (ET-743, brand name Yondelis), was discovered and isolated from a sea squirt, <i>Ecteinascidia turbinata</i>, by NIGMS grantee Kenneth Rinehart at the University of Illinois. It was synthesized by NIGMS grantees E.J. Corey and later by Samuel Danishefsky. Multiple versions of this structure are available as entries 2790-2797. | | Timothy Jamison, Massachusetts Institute of Technology | 846 | 31,422 | 923 | obtained by AZM from Timothy Jamison in January 2011 for a Web banner | | drug design, treatment, trabectedin, antitumor, chemotherapy drug, chemo, sarcoma, soft-tissue sarcoma | | 203 | 4,518 | 222 | | 423 | 11,774 | 461 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 1/19/2011 | | Timothy Jamison, Massachusetts Institute of Technology | | | Intracellular forces | Active | Illustration | | | | Gaudenz Danuser, Harvard Medical School | 927 | 618,664 | 1,236 | 3/4/11- Obtained by Jim Deatherage, who requested its use in the image gallery and for use in Common Fund (Roadmap) Single Cell Analysis initiative postings and publicity. | Gaudenz Danuser, Harvard Medical School | single cell analysis, cellular functionality, cell function, cell process, cell processes, proteins, cytoskeletal filaments, macromolecular dynamics, living cells | | 232 | 94,168 | 310 | | 463 | 248,482 | 618 | Cells, Molecular Structures | | 3/30/2011 | | Gaudenz Danuser, Harvard Medical School | | | Biosensors illustration | Active | Illustration | | | | Gaudenz Danuser, Harvard Medical School | 5,319 | 1,330,813 | 5,100 | 3/4/11- Obtained by Jim Deatherage, who requested its use in the image gallery and for use in Common Fund (Roadmap) Single Cell Analysis initiative postings and publicity. | Gaudenz Danuser, Harvard Medical School | single cell analysis, cellular functionality, cell function, cell process, cell processes, proteins, macromolecular dynamics, living cells, NIGMS-funded | | 1,276 | 136,170 | 1,223 | | 2,659 | 445,932 | 2,550 | Cells, Molecular Structures, Tools and Techniques | | 3/30/2011 | | Gaudenz Danuser, Harvard Medical School | | | Cell curvature | Active | Illustration | | | | Gaudenz Danuser, Harvard Medical School | 1,800 | 366,257 | 2,400 | 3/4/11- Obtained by Jim Deatherage, who requested its use in the image gallery and for use in Common Fund (Roadmap) Single Cell Analysis initiative postings and publicity. | Gaudenz Danuser, Harvard Medical School | squamous, computer generated, computer-generated, mesodermal, blood vessels, lymphatic vessels, capillaries, single cell analysis, cellular functionality, cell function, cell process, cell processes, proteins, macromolecular dynamics, living cells, NIGMS-funded | | 450 | 96,583 | 600 | | 900 | 255,305 | 1,200 | Cells, Molecular Structures | | 3/30/2011 | | Gaudenz Danuser, Harvard Medical School | | | Cell proliferation in a quail embryo | Active | Photograph | | Image showing that the edge zone (top of image) of the quail embryo shows no proliferating cells (cyan), unlike the interior zone (bottom of image). Non-proliferating cell nuclei are labeled green. This image was obtained as part of a study to understand cell migration in embryos. More specifically, cell proliferation at the edge of the embryo was studied by examining the cellular uptake of a chemical compound called BrDU, which incorporates into the DNA during the S-phase of the cell cycle. Here, the cells that are positive for BrDU uptake are labeled in cyan, while other non-proliferating cell nuclei are labeled green. Notice that the vast majority of BrDU+ cells are located far away from the edge, indicating that edge cells are mostly non-proliferating. An NIGMS grant to Professor Garcia was used to purchase the confocal microscope that collected this image. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2807">2807</a> and video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2809">2809</a>. | | Evan Zamir, Georgia Tech | 712 | 811,391 | 1,006 | Permission granted by PIO Abby Robinson. | Andrés Garcia, Georgia Tech | | | 170 | 14,290 | 241 | | 356 | 45,460 | 503 | Cells, Tools and Techniques | | 4/1/2011 | | Andrés Garcia, Georgia Tech | | | Vimentin in a quail embryo | Active | Photograph | | Confocal image showing high levels of the protein vimentin (white) at the edge zone of a quail embryo. Cell nuclei are labeled green. More specifically, this high-magnification (60X) image shows vimentin immunofluorescence in the edge zone (top of image) and inner zone (bottom of image) of a Stage 4 quail blastoderm. Vimentin expression (white) is shown merged with Sytox nuclear labeling (green) at the edge of the blastoderm. A thick vimentin filament runs circumferentially (parallel to the direction of the edge) that appears to delineate the transition between the edge zone and interior zone. Also shown are dense vimentin clusters or foci, which typically appear to be closely associated with edge cell nuclei. An NIGMS grant to Professor Garcia was used to purchase the confocal microscope that collected this image. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2808">2808</a> and video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2809">2809</a>. | | Evan Zamir, Georgia Tech | 720 | 412,574 | 1,024 | Permission granted by PIO Abby Robinson. | Andrés Garcia, Georgia Tech | | | 172 | 12,728 | 246 | | 360 | 39,307 | 512 | Cells, Tools and Techniques | | 4/1/2011 | | Andrés Garcia, Georgia Tech | | | Spinal nerve cells | Active | Photograph | | Neurons (green) and glial cells from isolated dorsal root ganglia express COX-2 (red) after exposure to an inflammatory stimulus (cell nuclei are blue). Lawrence Marnett and colleagues have demonstrated that certain drugs selectively block COX-2 metabolism of endocannabinoids -- naturally occurring analgesic molecules -- in stimulated dorsal root ganglia. Featured in the October 20, 2011 issue of <em>Biomedical Beat</em></a>. | | Lawrence Marnett and colleagues, Vanderbilt University; <i>Nature Chemical Biology</i> | 762 | 146,934 | 1,018 | | Lawrence Marnett, Vanderbilt University | | | 191 | 52,749 | 255 | | 381 | 91,990 | 509 | Cells | | | October 20, 2011 Biomedical Beat | Lawrence Marnett, Vanderbilt University | | | Vimentin in a quail embryo | Active | Video | | | | Evan Zamir, Georgia Tech | | 78,967 | | Permission granted by PIO Abby Robinson. | Andrés Garcia, Georgia Tech | | | 308 | 115,098 | 308 | | | | | Cells, Tools and Techniques | | 4/1/2011 | | Andrés Garcia, Georgia Tech | | | Circadian rhythm | Active | Illustration | | The human body keeps time with a master clock called the suprachiasmatic nucleus or SCN. Situated inside the brain, it's a tiny sliver of tissue about the size of a grain of rice, located behind the eyes. It sits quite close to the optic nerve, which controls vision, and this means that the SCN "clock" can keep track of day and night. The SCN helps control sleep by coordinating the actions of billions of miniature "clocks" throughout the body. These aren't actually clocks, but rather are ensembles of genes inside clusters of cells that switch on and off in a regular, 24-hour cycle in our physiological day. | | National Institute of General Medical Sciences | 1,001 | 69,360 | 1,500 | | | | | 250 | 6,686 | 374 | | 500 | 23,058 | 749 | | | 6/15/2011 | | Crabtree + Company | | | Pulsating response to stress in bacteria | Active | Photograph | | By attaching fluorescent proteins to the genetic circuit responsible for <i>B. subtilis</i>'s stress response, researchers can observe the cells' pulses as green flashes. In response to a stressful environment like one lacking food, <i>B. subtilis</i> activates a large set of genes that help it respond to the hardship. Instead of leaving those genes on as previously thought, researchers discovered that the bacteria flip the genes on and off, increasing the frequency of these pulses with increasing stress. See entry <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3254">3254</a> for the related video. | | Michael Elowitz, Caltech University | 395 | 138,363 | 543 | Permission from Michael Elowitz e-mailed to KJ. | Michael Elowitz, Caltech University | DNA bacterium | | 99 | 8,042 | 136 | | 198 | 21,799 | 272 | Cells, Genes | | 11/15/2011 | | Michael Elowitz, Caltech University | | | Neural circuits in worms similar to those in humans | Active | Photograph | | | | Shawn Xu, University of Michigan | 2,048 | 2,839,870 | 2,048 | Permission from Shawn Xu e-mailed to KJ. | Shawn Xu, University of Michigan | nerve cells | | 492 | 32,856 | 492 | | 1,024 | 97,031 | 1,024 | Cells | | 11/10/2011 | | Shawn Xu, University of Michigan | | | Centromeres on human chromosomes | Active | Photograph | | Human metaphase chromosomes are visible with fluorescence in vitro hybridization (FISH). Centromeric alpha satellite DNA (green) are found in the heterochromatin at each centromere. Immunofluorescence with CENP-A (red) shows the centromere-specific histone H3 variant that specifies the kinetochore. | | Mount Sinai School of Medicine | 1,500 | 838,806 | 1,500 | | | | | 375 | 74,765 | 375 | | 750 | 150,095 | 750 | Genes, Tools and Techniques | | 11/15/2011 | | Peter Warburton, Mount Sinai School of Medicine | | | Pulsating response to stress in bacteria - video | Active | Video | | By attaching fluorescent proteins to the genetic circuit responsible for <i>B. subtilis</i>'s stress response, researchers can observe the cells' pulses as green flashes. This video shows flashing cells as they multiply over the course of more than 12 hours. In response to a stressful environment like one lacking food, <i>B. subtilis</i> activates a large set of genes that help it respond to the hardship. Instead of leaving those genes on as previously thought, researchers discovered that the bacteria flip the genes on and off, increasing the frequency of these pulses with increasing stress. See entry <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3253">3253</a> for a related still image. | | Michael Elowitz, Caltech University | | 315,954 | | Permission from Michael Elowitz e-mailed to KJ. | Michael Elowitz, Caltech University | DNA bacterium | | | | | | | | | Cells, Genes | | 11/15/2011 | | Michael Elowitz, Caltech University | | | Caulobacter | Active | Photograph | | A study using <i>Caulobacter crescentus</i> showed that some bacteria use just-in-time processing, much like that used in industrial delivery, to make the glue that allows them to attach to surfaces, an important step in the infection process for many disease-causing bacteria. In the image shown, this freshwater bacterium has a holdfast at the top and a propelling flagellum at the end. From an Indiana University <a href=http://newsinfo.iu.edu/news/page/normal/20470.html?emailID=20470 target="_blank">news release</a>. | | Courtesy of Indiana University | 675 | 87,310 | 490 | | Yves Brun, Indiana University | | | 169 | 6,690 | 123 | | 338 | 16,357 | 245 | Cells | | 12/12/2011 | | Yves Brun, Indiana University | | | Peripheral nerve cells derived from ES cells | Active | Photograph | | | | Stephen Dalton, University of Georgia | 1,120 | 1,077,214 | 1,500 | From PI: Kirstie- The images are of peripheral neurons made from hESC-derived neural crest stem cells. Blue; DAPI, nuclei ?DNA Green; peripherin Red; Tuj1 You have my permission to use these images. Sorry for the delay. Best, Steve | Stephen Dalton, University of Georgia | neurons | | 280 | 17,388 | 375 | | 560 | 78,671 | 750 | Cells | | | GDB Briefing Book cover, 2011 | Stephen Dalton, University of Georgia | | | Peripheral nerve cell derived from ES cells | Active | Photograph | | A peripheral nerve cell made from human embryonic stem cell-derived neural crest stem cells. The nucleus is shown in blue, and nerve cell proteins peripherin and beta-tubulin (Tuj1) are shown in green and red, respectively. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3263">3263</a>. | | Stephen Dalton, University of Georgia | 1,124 | 324,017 | 1,500 | From PI: Kirstie- The images are of peripheral neurons made from hESC-derived neural crest stem cells. Blue; DAPI, nuclei ?DNA Green; peripherin Red; Tuj1 You have my permission to use these images. Sorry for the delay. Best, Steve | Stephen Dalton, University of Georgia | neurons | | 281 | 22,711 | 375 | | 562 | 101,463 | 750 | Cells | | 12/19/2011 | Research advance slide December 2011 GDB Briefing Book 2011 | Stephen Dalton, University of Georgia | | | Microfluidic chip | Active | Photograph | | Microfluidic chips have many uses in biology labs. The one shown here was used by bioengineers to study bacteria, allowing the researchers to synchronize their fluorescing so they would blink in unison. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3266">3266</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3268">3268</a>. From a UC San Diego <a href=http://ucsdnews.ucsd.edu/pressreleases/researchers_create_living_neon_signs_composed_of_millions_of_glowing_bacter/ target="_blank">news release</a>, "Researchers create living 'neon signs' composed of millions of glowing bacteria." | | Jeff Hasty Lab, UC San Diego | 2,736 | 5,073,068 | 3,648 | Permission and high-res files from Kim McDonald, UCSD PIO | Jeff Hasty, University of California, San Diego | | | 684 | 27,912 | 912 | | 1,368 | 198,886 | 1,824 | Tools and Techniques | | 12/20/2011 | | Jeff Hasty Lab, UC San Diego | | | Colony of human ES cells | Active | Photograph | | A colony of human embryonic stem cells (light blue) grows on fibroblasts (dark blue). | | California Institute for Regenerative Medicine | 771 | 536,602 | 1,024 | Todd Dubnicoff provided KJ permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 185 | 10,363 | 246 | | 385 | 39,580 | 512 | Cells | | 12/22/2011 | | California Institute for Regenerative Medicine | | | Biopixels | Active | Photograph | | | | Jeff Hasty Lab, UC San Diego | 1,578 | 762,908 | 2,325 | Permission and high-res files from Kim McDonald, UCSD PIO | Jeff Hasty, University of California, San Diego | fluorescent fluorescence | | 378 | 58,162 | 557 | | 789 | 155,202 | 1,162 | Cells | | 12/20/2011 | | Jeff Hasty Lab, UC San Diego | | | Fluorescent E. coli bacteria | Active | Photograph | | Bioengineers were able to coax bacteria to blink in unison on microfluidic chips. They called each blinking bacterial colony a biopixel. Thousands of fluorescent <i>E. coli</i> bacteria, shown here, make up a biopixel. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3265">3265</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3266">3266</a>. From a UC San Diego <a href=http://ucsdnews.ucsd.edu/pressreleases/researchers_create_living_neon_signs_composed_of_millions_of_glowing_bacter/ target="_blank">news release</a>, "Researchers create living 'neon signs' composed of millions of glowing bacteria." | | Jeff Hasty Lab, UC San Diego | 896 | 83,647 | 1,062 | Permission and high-res files from Kim McDonald, UCSD PIO | Jeff Hasty, University of California, San Diego | fluorescence | | 215 | 9,781 | 254 | | 448 | 28,569 | 531 | Cells | | 12/20/2011 | | Jeff Hasty Lab, UC San Diego | | | Dopaminergic neurons derived from mouse embryonic stem cells | Active | Photograph | | These neurons are derived from mouse embryonic stem cells. Red shows cells making a protein called TH that is characteristic of the neurons that degenerate in Parkinson's disease. Green indicates a protein that's found in all neurons. Blue indicates the nuclei of all cells. Studying dopaminergic neurons can help researchers understand the origins of Parkinson's disease and could be used to screen potential new drugs. Image and caption information courtesy of the California Institute for Regenerative Medicine. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3270">3270</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3285">3285</a>. | | Yaping Sun, lab of Su Guo, University of California, San Francisco, via CIRM | 810 | 577,029 | 1,024 | Todd Dubnicoff provided KJ permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 194 | 15,276 | 246 | | 405 | 48,696 | 512 | Cells, Injury and Illness | | 12/22/2011 | | Yaping Sun, lab of Su Guo, University of California, San Francisco, via CIRM | | | Ear hair cells derived from embryonic stem cells | Active | Photograph | | Mouse embryonic stem cells matured into this bundle of hair cells similar to the ones that transmit sound in the ear. These cells could one day be transplanted as a therapy for some forms of deafness, or they could be used to screen drugs to treat deafness. The hairs are shown at 23,000 times magnification via scanning electron microscopy. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Stefen Heller, Stanford University, via CIRM | 1,024 | 326,063 | 716 | Todd Dubnicoff provided KJ permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | SEM EM auditory | | 245 | 7,159 | 172 | | 512 | 20,670 | 358 | Cells, Tools and Techniques | | 12/22/2011 | | Stefen Heller, Stanford University, via CIRM | | | Dopaminergic neurons from ES cells | Active | Photograph | | | | Jeannie Liu, Lab of Jan Nolta, University of California, Davis, via CIRM | 379 | 107,642 | 500 | Todd Dubnicoff provided KJ permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | nerve cells | | 233 | 112,485 | 308 | | 190 | 27,004 | 250 | Cells | | 12/22/2011 | | Jeannie Liu, Lab of Jan Nolta, University of California, Davis, via CIRM | | | Heart muscle with reprogrammed skin cells | Active | Photograph | | Skins cells were reprogrammed into heart muscle cells. The cells highlighted in green are remaining skin cells. Red indicates a protein that is unique to heart muscle. The technique used to reprogram the skin cells into heart cells could one day be used to mend heart muscle damaged by disease or heart attack. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Deepak Srivastava, Gladstone Institute of Cardiovascular Disease, via CIRM | 765 | 561,163 | 1,024 | | | stem cells | | 183 | 24,242 | 246 | | 765 | 561,163 | 1,024 | Cells | | 12/22/2011 | | Deepak Srivastava, Gladstone Institute of Cardiovascular Disease, via CIRM | | | Human embryonic stem cells on feeder cells | Active | Photograph | | The nuclei stained green highlight human embryonic stem cells grown under controlled conditions in a laboratory. Blue represents the DNA of surrounding, supportive feeder cells. Image and caption information courtesy of the California Institute for Regenerative Medicine. See related image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3274">3724</a>. | | Julie Baker lab, Stanford University School of Medicine, via CIRM | 765 | 240,406 | 1,024 | Todd Dubnicoff provided KJ permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 183 | 11,179 | 246 | | 382 | 28,480 | 512 | Cells | | | | Julie Baker lab, Stanford University School of Medicine, via CIRM | | | Human ES cells turn into insulin-producing cells | Active | Photograph | | Human embryonic stem cells were differentiated into cells like those found in the pancreas (blue), which give rise to insulin-producing cells (red). When implanted in mice, the stem cell-derived pancreatic cells can replace the insulin that isn't produced in type 1 diabetes. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Eugene Brandon, ViaCyte, via CIRM | 768 | 667,549 | 1,024 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | beta cells | | 184 | 29,981 | 246 | | 384 | 83,109 | 512 | Cells | | 12/22/2011 | | Eugene Brandon, ViaCyte, via CIRM | | | Human embryonic stem cells on feeder cells | Active | Photograph | | This fluorescent microscope image shows human embryonic stem cells whose nuclei are stained green. Blue staining shows the surrounding supportive feeder cells. Image and caption information courtesy of the California Institute for Regenerative Medicine. See related image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3275">3275</a>. | | Michael Longaker lab, Stanford University School of Medicine, via CIRM | 765 | 466,007 | 1,024 | Todd Dubnicoff provided KJ permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 192 | 32,879 | 256 | | 383 | 99,942 | 512 | Cells, Tools and Techniques | | | | Michael Longaker lab, Stanford University School of Medicine, via CIRM | | | Human ES cells differentiating into neurons | Active | Photograph | | This image shows hundreds of human embryonic stem cells in various stages of differentiating into neurons. Some cells have become neurons (red), while others are still precursors of nerve cells (green). The yellow is an imaging artifact resulting when cells in both stages are on top of each other. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Guoping Fan lab, University of California, Los Angeles, via CIRM | 588 | 132,431 | 640 | Todd Dubnicoff provided KJ permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 141 | 5,465 | 153 | | 294 | 17,378 | 320 | Cells | | 12/22/2011 | | Guoping Fan lab, University of California, Los Angeles, via CIRM | | | Induced pluripotent stem cells from skin 02 | Active | Photograph | | These induced pluripotent stem cells (iPS cells) were derived from a woman's skin. Blue show nuclei. Green show a protein found in iPS cells but not in skin cells (NANOG). The red dots show the inactivated X chromosome in each cell. These cells can develop into a variety of cell types. Image and caption information courtesy of the California Institute for Regenerative Medicine. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3278">3278</a>. | | Kathrin Plath lab, University of California, Los Angeles, via CIRM | 765 | 470,611 | 1,024 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 183 | 9,296 | 246 | | 382 | 31,487 | 512 | Cells | | 12/22/2011 | | Kathrin Plath lab, University of California, Los Angeles, via CIRM | | | Induced pluripotent stem cells from skin | Active | Photograph | | These induced pluripotent stem cells (iPS cells) were derived from a woman's skin. Green and red indicate proteins found in reprogrammed cells but not in skin cells (TRA1-62 and NANOG). These cells can then develop into different cell types. Image and caption information courtesy of the California Institute for Regenerative Medicine. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3279">3279</a>. | | Kathrin Plath lab, University of California, Los Angeles, via CIRM | 765 | 439,466 | 1,024 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 183 | 33,465 | 246 | | 382 | 68,147 | 512 | Cells | | 12/22/2011 | | Kathrin Plath lab, University of California, Los Angeles, via CIRM | | | Motor neuron progenitors derived from human ES cells | Active | Photograph | | Motor neuron progenitors (green) were derived from human embryonic stem cells. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Sharyn Rossi, Hans Keirstead lab, University of California, Irvine, via CIRM | 3,000 | 877,112 | 3,000 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | nerve cells | | 750 | 75,754 | 750 | | 1,500 | 292,454 | 1,500 | Cells | | 12/22/2011 | | Hans Keirstead lab, University of California, Irvine, via CIRM | | | Mouse heart fibroblasts | Active | Photograph | | This image shows mouse fetal heart fibroblast cells. The muscle protein actin is stained red, and the cell nuclei are stained blue. The image was part of a study investigating stem cell-based approaches to repairing tissue damage after a heart attack. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Jesus Isaac Luna, Kara McCloskey lab, University of California, Merced, via CIRM | 2,241 | 547,659 | 3,000 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 560 | 33,394 | 749 | | 1,120 | 162,886 | 1,499 | Cells | | 12/22/2011 | | Kara McCloskey lab, University of California, Merced, via CIRM | | | Mouse heart muscle cells | Active | Photograph | | This image shows neonatal mouse heart cells. These cells were grown in the lab on a chip that aligns the cells in a way that mimics what is normally seen in the body. Green shows the protein N-cadherin, which indicates normal connections between cells. Red indicates the muscle protein actin, and blue indicates the cell nuclei. The work shown here was part of a study attempting to grow heart tissue in the lab to repair damage after a heart attack. Image and caption information courtesy of the California Institute for Regenerative Medicine. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3281">3281</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3283">3283</a>. | | Jesus Isaac Luna, Kara McCloskey lab, University of California, Merced, via CIRM | 1,024 | 571,641 | 952 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 245 | 15,057 | 228 | | 512 | 46,521 | 476 | Cells | | 12/22/2011 | | Kara McCloskey lab, University of California, Merced, via CIRM | | | Mouse heart muscle cells 02 | Active | Photograph | | This image shows neonatal mouse heart cells. These cells were grown in the lab on a chip that aligns the cells in a way that mimics what is normally seen in the body. Green shows the muscle protein toponin I. Red indicates the muscle protein actin, and blue indicates the cell nuclei. The work shown here was part of a study attempting to grow heart tissue in the lab to repair damage after a heart attack. Image and caption information courtesy of the California Institute for Regenerative Medicine. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3281">3281</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3282">3282</a>. | | Jesus Isaac Luna, Kara McCloskey lab, University of California, Merced, via CIRM | 923 | 610,412 | 1,024 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 221 | 14,624 | 246 | | 461 | 48,100 | 512 | Cells | | 12/22/2011 | | Kara McCloskey lab, University of California, Merced, via CIRM | | | Neurons from human ES cells | Active | Photograph | | These neural precursor cells were derived from human embryonic stem cells. The neural cell bodies are stained red, and the nuclei are blue. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Xianmin Zeng lab, Buck Institute for Age Research, via CIRM | 765 | 419,833 | 1,024 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | nerve cells | | 183 | 12,216 | 246 | | 382 | 37,769 | 512 | Cells | | 12/22/2011 | | Xianmin Zeng lab, Buck Institute for Age Research, via CIRM | | | Retinal pigment epithelium derived from human ES cells 02 | Active | Photograph | | This image shows a layer of retinal pigment epithelium cells derived from human embryonic stem cells, highlighting the nuclei (red) and cell surfaces (green). This kind of retinal cell is responsible for macular degeneration, the most common cause of blindness. Image and caption information courtesy of the California Institute for Regenerative Medicine. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3286">3286</a> | | David Buckholz and Sherry Hikita, University of California, Santa Barbara, via CIRM | 450 | 153,657 | 370 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | eye vision sight | | 375 | 208,848 | 308 | | 225 | 12,974 | 185 | Cells | | 12/22/2011 | | David Buckholz and Sherry Hikita, University of California, Santa Barbara, via CIRM | | | Neurons from human ES cells 02 | Active | Photograph | | | | Xianmin Zeng lab, Buck Institute for Age Research, via CIRM | 765 | 417,172 | 1,024 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | nerve cells | | 183 | 12,420 | 246 | | 382 | 38,827 | 512 | Cells | | 12/22/2011 | | Xianmin Zeng lab, Buck Institute for Age Research, via CIRM | | | Retinal pigment epithelium derived from human ES cells | Active | Photograph | | This color-enhanced image is a scanning electron microscope image of retinal pigment epithelial (RPE) cells derived from human embryonic stem cells. The cells are remarkably similar to normal RPE cells, growing in a hexagonal shape in a single, well-defined layer. This kind of retinal cell is responsible for macular degeneration, the most common cause of blindness. Image and caption information courtesy of the California Institute for Regenerative Medicine. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3287">3287</a>. | | David Hinton lab, University of Southern California, via CIRM | 539 | 282,180 | 640 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | eye vision sight | | 129 | 9,093 | 153 | | 269 | 36,378 | 320 | Cells, Tools and Techniques | | 12/22/2011 | | David Hinton lab, University of Southern California, via CIRM | | | Smooth muscle from human ES cells | Active | Photograph | | These smooth muscle cells were derived from human embryonic stem cells. The nuclei are stained blue, and the proteins of the cytoskeleton are stained green. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Alexey Terskikh lab, Burnham Institute for Medical Research, via CIRM | 512 | 57,172 | 640 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 123 | 3,444 | 153 | | 256 | 9,094 | 320 | Cells | | 12/22/2011 | | Alexey Terskikh lab, Burnham Institute for Medical Research, via CIRM | | | Smooth muscle from mouse stem cells | Active | Photograph | | These smooth muscle cells were derived from mouse neural crest stem cells. Red indicates smooth muscle proteins, blue indicates nuclei. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Deepak Srivastava, Gladstone Institutes, via CIRM | 1,130 | 70,071 | 1,500 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | | | 282 | 5,077 | 374 | | 565 | 19,727 | 750 | Cells | | 12/22/2011 | | Deepak Srivastava, Gladstone Institutes, via CIRM | | | Fluorescence in situ hybridization (FISH) in mouse ES cells shows DNA interactions | Active | Photograph | | Researchers used fluorescence in situ hybridization (FISH) to confirm the presence of long range DNA-DNA interactions in mouse embryonic stem cells. Here, two loci labeled in green (Oct4) and red that are 13 Mb apart on linear DNA are frequently found to be in close proximity. DNA-DNA colocalizations like this are thought to both reflect and contribute to cell type specific gene expression programs. | | Kathrin Plath, University of California, Los Angeles | 1,024 | 96,695 | 1,024 | Alisa obtained from Kathrin Plath on 2/8/2012 after Susan Haynes recommended her as a source of interesting images. | Kathrin Plath, University of California, Los Angeles | | | 256 | 31,565 | 256 | | 512 | 61,301 | 512 | Cells, Genes, Tools and Techniques | | 2/10/2012 | | Kathrin Plath, University of California, Los Angeles | | | Four timepoints in gastrulation | Active | Photograph | | It has been said that gastrulation is the most important event in a person's life. This part of early embryonic development transforms a simple ball of cells and begins to define cell fate and the body axis. In a study published in <i>Science</i> magazine in March 2012, NIGMS grantee Bob Goldstein and his research group studied how contractions of actomyosin filaments in <i>C. elegans</i> and <i>Drosophila</i> embryos lead to dramatic rearrangements of cell and embryonic structure. This research is described in detail in the following <a href=http:// www.sciencemag.org/content/335/6073/1232.abstract target="_blank"> article</a>: "Triggering a Cell Shape Change by Exploiting Preexisting Actomyosin Contractions." In these images, myosin (green) and plasma membrane (red) are highlighted at four timepoints in gastrulation in the roundworm <i>C. elegans</i>. The blue highlights in the top three frames show how cells are internalized, and the site of closure around the involuting cells is marked with an arrow in the last frame. See related video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3334">3334</a>. | | Chris Higgins, UNC Chapel Hill, and Liang Gao, Janelia Farm | 2,583 | 541,597 | 1,208 | | Bob Goldstein, University of North Carolina, Chapel Hill | | | 620 | 31,062 | 290 | | 1,291 | 94,292 | 604 | Cells | | 2/22/2012 | | Bob Goldstein, University of North Carolina, Chapel Hill | | | Centrioles anchor cilia in planaria | Active | Photograph | | Centrioles (green) anchor cilia (red), which project on the surface of pharynx cells of the freshwater planarian <i>Schmidtea mediterranea</i>. Centrioles require cellular structures called centrosomes for assembly in other animal species, but this flatworm known for its regenerative ability was unexpectedly found to lack centrosomes. From a Stowers University <a href=http:// www.stowers.org/media/news/jan-5-2012 target="_blank">news release</a>. | | Juliette Azimzadeh, University of California, San Francisco | 399 | 34,729 | 400 | | Wallace Marshall, University of California, San Francisco | | | 307 | 163,888 | 308 | | 199 | 12,130 | 200 | Cells | | 1/6/2012 | | Juliette Azimzadeh, University of California, San Francisco | | | Cluster analysis of mysterious protein | Active | Illustration | | Researchers use cluster analysis to study protein shape and function. Each green circle represents one potential shape of the protein mitoNEET. The longer the blue line between two circles, the greater the differences between the shapes. Most shapes are similar; they fall into three clusters that are represented by the three images of the protein. From a Rice University <a href=http:// www.eurekalert.org/pub_releases/2012-01/ru-rus012612.php target="_blank">news release</a>. Graduate student Elizabeth Baxter and Patricia Jennings, professor of chemistry and biochemistry at UCSD, collaborated with José Onuchic, a physicist at Rice University, on this work. | | Elizabeth Baxter, University of California, San Diego | 2,480 | 3,099,056 | 2,822 | Obtained image and permission from Patricia Jennings and Elizabeth Baxter 1/31/12. | Patricia Jennings, University of California, San Diego | | | 594 | 46,862 | 677 | | 1,240 | 174,164 | 1,411 | Molecular Structures, Tools and Techniques | | 2/2/2012 | | Patricia Jennings and Elizabeth Baxter, University of California, San Diego | | | Rat Hippocampus | Active | Photograph | | This image of the hippocampus was taken with an ultra-widefield high-speed multiphoton laser microscope. Tissue was stained to reveal the organization of glial cells (cyan), neurofilaments (green) and DNA (yellow). The microscope Deerinck used was developed in conjunction with Roger Tsien (2008 Nobel laureate in Chemistry) and remains a powerful and unique tool today. | | National Center for Microscopy and Imaging Research | 2,298 | 4,453,178 | 3,200 | | | brain | | 551 | 347,738 | 767 | | 1,149 | 1,266,822 | 1,600 | Cells, Tools and Techniques | | 3/13/2012 | | Tom Deerinck, NCMIR | | | DNA replication origin recognition complex (ORC) | Active | Video | | A study published in March 2012 used cryo-electron microscopy to determine the structure of the DNA replication origin recognition complex (ORC), a semi-circular, protein complex (yellow) that recognizes and binds DNA to start the replication process. The ORC appears to wrap around and bend approximately 70 base pairs of double stranded DNA (red and blue). Also shown is the protein Cdc6 (green), which is also involved in the initiation of DNA replication. The video shows the structure from different angles. See related image <a href="/Pages/DetailPage.aspx?imageID2=3597">3597</a>. | | Huilin Li, Brookhaven National Laboratory, and Bruce Stillman, Cold Spring Harbor Laboratory | | 692,283 | | | Huilin Li; Bruce Stillman | cryo-EM | | | | | | | | | Molecular Structures | | | | Huilin Li, Brookhaven National Laboratory | | | Three neurons and human ES cells | Active | Photograph | | The three neurons (red) visible in this image were derived from human embryonic stem cells. Undifferentiated stem cells are green here. Image and caption information courtesy of the California Institute for Regenerative Medicine. | | Anirvan Ghosh lab, University of California, San Diego, via CIRM | 640 | 68,284 | 480 | Todd Dubnicoff provided permission to use any images from CIRM Flickr feed www.flickr.com/photos/cirm) on 12/12/2011. "In the credits for each image, please include CIRM as well as the institution, laboratory, researchers that are listed in each Flickr caption." | | nerve cells | | 411 | 113,814 | 308 | | 320 | 9,842 | 240 | Cells | | 12/22/2011 | | Anirvan Ghosh lab, University of California, San Diego, via CIRM | | | Planarian stem cell colony | Active | Photograph | | Planarians are freshwater flatworms that have powerful abilities to regenerate their bodies, which would seem to make them natural model organisms in which to study stem cells. But until recently, scientists had not been able to efficiently find the genes that regulate the planarian stem cell system. In this image, a single stem cell has given rise to a colony of stem cells in a planarian. Proliferating cells are red, and differentiating cells are blue. Quantitatively measuring the size and ratios of these two cell types provides a powerful framework for studying the roles of stem cell regulatory genes in planarians. | | Dan Wagner, Whitehead Institute | 1,200 | 474,795 | 1,200 | Permission and high-res file from Peter Reddien. Dear Joe, You are welcome to use this image. I've attached a high resolution version best wishes, Peter Peter Reddien, Ph. D. Howard Hughes Medical Institute MIT Biology Member, Whitehead Institute 9 Cambridge Center Cambridge, MA 02142 (617) 324-4083 reddien@wi.mit.edu On Jun 21, 2013, at 1:46 PM, "Piergrossi, Joe (NIH/NIGMS) [C]" < joe.piergrossi@nih.gov> wrote: Dear Dr. Reddien, Last November we featured some of your research (credited alongside Hanh Thi-Kim Vu and Jochen Rink) in our series Research in Action. We would like to use the image associated with that article in our online image gallery. Would you allow us to do so? Granting us permission to do so would mean the image would be available to the public for education, media and other uses, in addition to NIGMS/NIH use. If you do grant permission, please send a high-resolution version of the picture. Thanks! Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | | Structure | | 300 | 102,271 | 300 | | 600 | 268,271 | 600 | Cells, Genes | | 3/8/2012 | | Peter Reddien, Whitehead Institute | | | Some bacteria attack with spring-loaded poison daggers | Active | Illustration | | Bacteria have evolved different systems for secreting proteins into the fluid around them or into other cells. Some have syringe-like exterior structures that can pierce other cells and inject proteins. One type of system, called a type VI secretion system, is found in about a quarter of all bacteria with two membranes. A team, co-led by researchers at the California Institute of Technology (Caltech), figured out the structure of the type VI secretion system apparatus and proposed how it might work--by shooting spring-loaded poison molecular daggers. Further information is available in the <i>Nature</i> <a href=http:// www.nature.com/nature/journal/v483/n7388/full/nature10846.html target="_blank">research paper</a>, "Type VI secretion requires a dynamic contractile phage tail-like structure." | | Everett Kane, created for the journal Nature | 299 | 27,618,224 | 400 | | Grant Jensen, California Institute of Technology | | | 230 | 56,192 | 308 | | 150 | 10,466 | 200 | Cells | | 2/29/2012 | | Grant Jensen, California Institute of Technology | | | Mouse Retina | Active | Photograph | | A genetic disorder of the nervous system, neurofibromatosis causes tumors to form on nerves throughout the body, including a type of tumor called an optic nerve glioma that can result in childhood blindness. The image was used to demonstrate the unique imaging capabilities of one of our newest (at the time) laser scanning microscopes and is of a wildtype (normal) mouse retina in the optic fiber layer. This layer is responsible for relaying information from the retina to the brain and was fluorescently stained to reveal the distribution of glial cells (green), DNA and RNA in the cell bodies of the retinal ganglion neurons (orange) and their optic nerve fibers (red), and actin in endothelial cells surrounding a prominent branching blood vessel (blue). By studying the microscopic structure of normal and diseased retina and optic nerves, we hope to better understand the altered biology of the tissues in these tumors with the prospects of developing therapeutic interventions. | | National Center for Microscopy and Imaging Research | 3,069 | 3,695,237 | 3,600 | | | eye | | 736 | 411,595 | 863 | | 1,534 | 1,289,992 | 1,800 | Cells, Tools and Techniques | | | BioBeat | Tom Deerinck, NCMIR | | | Human opioid receptor structure superimposed on poppy | Active | Illustration | | Opioid receptors on the surfaces of brain cells are involved in pleasure, pain, addiction, depression, psychosis, and other conditions. The receptors bind to both innate opioids and drugs ranging from hospital anesthetics to opium. Researchers at The Scripps Research Institute, supported by the NIGMS Protein Structure Initiative, determined the first three-dimensional structure of a human opioid receptor, a kappa-opioid receptor. In this illustration, the submicroscopic receptor structure is shown while bound to an agonist (or activator). The structure is superimposed on a poppy flower, the source of opium. | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 3,300 | 1,970,640 | 2,550 | Caption from news release: The structure of the kappa-opioid receptor with bound antagonist JDTic is shown resting in a poppy flower, the source of opium. Image by Yekaterina Kadyshevskaya, PSI:Biology GPCR Network, The Scripps Research Institute. | Raymond Stevens, The Scripps Research Institute | | | 791 | 124,010 | 611 | | 1,650 | 318,997 | 1,275 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 3/22/2012 | | Raymond Stevens, The Scripps Research Institute | | | Cytochrome structure with anticancer drug | Active | Illustration | | This image shows the structure of the CYP17A1 enzyme (ribbons colored from blue N-terminus to red C-terminus), with the associated heme colored black. The prostate cancer drug abiraterone is colored gray. Cytochrome P450 enzymes bind to and metabolize a variety of chemicals, including drugs. Cytochrome P450 17A1 also helps create steroid hormones. Emily Scott's lab is studying how CYP17A1 could be selectively inhibited to treat prostate cancer. She and graduate student Natasha DeVore elucidated the structure shown using X-ray crystallography. Dr. Scott created the image (both white bg and transparent bg) for the NIGMS image gallery. See the "Medium-Resolution Image" for a PNG version of the image that is transparent. | | Emily Scott, University of Kansas | 2,000 | 549,998 | 2,400 | PERMISSION FOR IMAGE GALLERY -----Original Message----- From: Scott, Emily E [ mailto:eescott@ku.edu] Sent: Thursday, April 26, 2012 10:30 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: seeking high res CYP17A1 Alisa, Yes, please be my guest to add it to your image gallery for general usage with acknowledgment. My pleasure. Cheers, Emily -- Emily E. Scott, Ph.D. Associate Professor Dept. of Medicinal Chemistry University of Kansas 1251 Wescoe Hall Dr. Lawrence, KS 66045 phone: (785) 864-5559 fax: (785) 864-5326 http://www.medchem.ku.edu/faculty_scott.shtml On 4/26/12 1:32 PM, "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> wrote: Thanks for your speedy response, Emily. This will work fine. Since it's a large file and is free of copyright restrictions, would we be able to add it to the NIGMS image gallery ( http://images.nigms.nih.gov/ ), where it will be available for anyone else to use for non-commercial purposes, provided they acknowledge you? Would we also be able to use the image in other printed and online publications from my office? I'll send you the Findings write-up to check for accuracy in the next day or two. > Thanks again, Alisa >_________________________ >>-----Original Message----- >From: Scott, Emily E [ mailto:eescott@ku.edu] >Sent: Thursday, April 26, 2012 2:02 PM >To: Machalek, Alisa Zapp (NIH/NIGMS) [E] >Cc: DeVore, Natasha Mary >Subject: Re: seeking high res CYP17A1 > Dear Alisa, We'd be very glad to provide an image for your use in Findings.Perhaps the attached would do? It is an image free of copyright restrictions that shows the CYP17A1 enzyme ribbons colored from blue N-terminus to red C-terminus) with the heme as black sticks and the prostate cancer drug abiraterone in grey sticks. The background is transparent for maximal flexibility in composition. This png file is a rather large and can be scaled as you like in terms of resolution and size. | Emily Scott, University of Kansas | | | 479 | 108,968 | 575 | | 2,000 | 1,741,954 | 2,400 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 5/9/2012 | Alisa requested this in spring 2012 for use in Findings. | Emily Scott, University of Kansas | | | Spreading Cells- 02 | Active | Photograph | | Cells move forward with lamellipodia and filopodia supported by networks and bundles of actin filaments. Proper, controlled cell movement is a complex process. Recent research has shown that an actin-polymerizing factor called the Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation. In this photo, the ARPC3-/- fibroblast cells were fixed and stained with Alexa 546 phalloidin for F-actin (red), Arp2 (green), and DAPI to visualize the nucleus (blue). Arp2, a subunit of the Arp2/3 complex, is absent in the filopodi-like structures based leading edge of ARPC3-/- fibroblasts cells. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3328">3328</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3330">3330</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3331">3331</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3332">3332</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3333">3333</a>. | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | 318 | 100,174 | 314 | Project Overview The Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation to generate Y-shaped branches from existing actin filaments. It remains unclear whether the Arp2/3 complex is truly important for leading edge extension in amoeboid form of cell motility. We have generated ARPC3+/- mice using a gene-trap ES cell line. To further investigate the function of the Arp2/3 complex in different motile cells we developed an approach to derive ARPC3+/+ and ARPC3-/- ES cells from blastocysts of ARPC3+/- crosses and differentiate them into fibroblasts cells. The deletion of ARPC3, a subunit of the Arp2/3 complex, resulted in a loss of lamellipodia structures. Interestingly, filopodia structures were observed. Cells without lamellipodia were able to migrate with similar speed compared to the wild-type cells. ARPC3-/- fibroblast cells exhibit defect in directional migration. ARPC3+/+ and ARPC3-/- primary fibroblast cells that are differentiated from the corresponding Mouse Embryonic stem cells. From: Suraneni, Praveen [PKS@stowers.org] Sent: Tuesday, April 10, 2012 3:34 PM To: Jegalian, Karin (NIH/NIGMS) [C] Subject: RE: On the Move Hi Jegalian, Thank you for the request, I can send you few images that are not submitted to JCB. Let me know how many do you need and source to upload them. Thank you, Praveen. From: Li, Rong [ mailto:RLI@stowers.org] Sent: Tuesday, April 10, 2012 11:44 AM To: Jegalian, Karin (NIH/NIGMS) [C] Cc: Suraneni, Praveen Subject: RE: On the Move Dear Karin, You are more than welcome to use our images, though I'm unsure about JCB's copyright policy. I imagine that they should be alright with it. We'll be happy to send you the high resolution images too. I'm copying the first author of this email. Best regards, Rong | Rong Li and Praveen Suraneni | | | 312 | 131,292 | 308 | | 159 | 4,710 | 157 | Cells | | 5/15/2012 | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | | | Diversity oriented synthesis: generating skeletal diversity using folding processes | Active | Video | | This 1 1/2-minute video animation was produced for chemical biologist Stuart Schreiber's lab page. The animation shows how diverse chemical structures can be produced in the lab. | | Animation by Eric Keller, directed by Martin Burke, copyright 2003, Eric Keller | | 4,362,486 | | PERMISSION: From: Eric Keller [ mailto:bloopatone@gmail.com] Sent: Friday, March 30, 2012 11:55 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: seeking permission to use 2003 animation Sorry I have not responded I'm traveling at the moment. You have my permission to use the animation in your image gallery. Please use the following credit: Animation by Eric Keller, directed by Marty Burke, copyright 2003, Eric Keller Eric Keller | Stuart Schreiber, Broad Institute | | | 173 | 46,561 | 308 | | | | | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | | | Eric Keller | | | Spreading Cells 01 | Active | Photograph | | Cells move forward with lamellipodia and filopodia supported by networks and bundles of actin filaments. Proper, controlled cell movement is a complex process. Recent research has shown that an actin-polymerizing factor called the Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation. In this photo, the ARPC3+/+ fibroblast cells were fixed and stained with Alexa 546 phalloidin for F-actin (red), Arp2 (green), and DAPI to visualize the nucleus (blue). Arp2, a subunit of the Arp2/3 complex, is localized at the lamellipodia leading edge of ARPC3+/+ fibroblast cells. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3329">3329</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3330">3330</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3331">3331</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3332">3332</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3333">3333</a>. | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | 314 | 86,319 | 331 | Project Overview The Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation to generate Y-shaped branches from existing actin filaments. It remains unclear whether the Arp2/3 complex is truly important for leading edge extension in amoeboid form of cell motility. We have generated ARPC3+/- mice using a gene-trap ES cell line. To further investigate the function of the Arp2/3 complex in different motile cells we developed an approach to derive ARPC3+/+ and ARPC3-/- ES cells from blastocysts of ARPC3+/- crosses and differentiate them into fibroblasts cells. The deletion of ARPC3, a subunit of the Arp2/3 complex, resulted in a loss of lamellipodia structures. Interestingly, filopodia structures were observed. Cells without lamellipodia were able to migrate with similar speed compared to the wild-type cells. ARPC3-/- fibroblast cells exhibit defect in directional migration. ARPC3+/+ and ARPC3-/- primary fibroblast cells that are differentiated from the corresponding Mouse Embryonic stem cells. From: Suraneni, Praveen [PKS@stowers.org] Sent: Tuesday, April 10, 2012 3:34 PM To: Jegalian, Karin (NIH/NIGMS) [C] Subject: RE: On the Move Hi Jegalian, Thank you for the request, I can send you few images that are not submitted to JCB. Let me know how many do you need and source to upload them. Thank you, Praveen. From: Li, Rong [ mailto:RLI@stowers.org] Sent: Tuesday, April 10, 2012 11:44 AM To: Jegalian, Karin (NIH/NIGMS) [C] Cc: Suraneni, Praveen Subject: RE: On the Move Dear Karin, You are more than welcome to use our images, though I'm unsure about JCB's copyright policy. I imagine that they should be alright with it. We'll be happy to send you the high resolution images too. I'm copying the first author of this email. Best regards, Rong | Rong Li, Stowers Institute for Medical Research | | | 292 | 109,564 | 308 | | 157 | 4,908 | 165 | Cells | | 5/11/2012 | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | | | mDia1 antibody staining- 02 | Active | Photograph | | Cells move forward with lamellipodia and filopodia supported by networks and bundles of actin filaments. Proper, controlled cell movement is a complex process. Recent research has shown that an actin-polymerizing factor called the Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation. In this photo, the ARPC3-/- fibroblast cells were fixed and stained with Alexa 546 phalloidin for F-actin (red), mDia1 (green), and DAPI to visualize the nucleus (blue). In ARPC3-/- fibroblast cells, mDia1 is localized at the tips of the filopodia-like structures. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3328">3328</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3329">3329</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3330">3330</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3332">3332</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3333">3333</a>. | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | 326 | 174,000 | 406 | Project Overview The Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation to generate Y-shaped branches from existing actin filaments. It remains unclear whether the Arp2/3 complex is truly important for leading edge extension in amoeboid form of cell motility. We have generated ARPC3+/- mice using a gene-trap ES cell line. To further investigate the function of the Arp2/3 complex in different motile cells we developed an approach to derive ARPC3+/+ and ARPC3-/- ES cells from blastocysts of ARPC3+/- crosses and differentiate them into fibroblasts cells. The deletion of ARPC3, a subunit of the Arp2/3 complex, resulted in a loss of lamellipodia structures. Interestingly, filopodia structures were observed. Cells without lamellipodia were able to migrate with similar speed compared to the wild-type cells. ARPC3-/- fibroblast cells exhibit defect in directional migration. ARPC3+/+ and ARPC3-/- primary fibroblast cells that are differentiated from the corresponding Mouse Embryonic stem cells. From: Suraneni, Praveen [PKS@stowers.org] Sent: Tuesday, April 10, 2012 3:34 PM To: Jegalian, Karin (NIH/NIGMS) [C] Subject: RE: On the Move Hi Jegalian, Thank you for the request, I can send you few images that are not submitted to JCB. Let me know how many do you need and source to upload them. Thank you, Praveen. From: Li, Rong [ mailto:RLI@stowers.org] Sent: Tuesday, April 10, 2012 11:44 AM To: Jegalian, Karin (NIH/NIGMS) [C] Cc: Suraneni, Praveen Subject: RE: On the Move Dear Karin, You are more than welcome to use our images, though I'm unsure about JCB's copyright policy. I imagine that they should be alright with it. We'll be happy to send you the high resolution images too. I'm copying the first author of this email. Best regards, Rong | Rong Li, Stowers Institute for Medical Research | | | 247 | 148,854 | 308 | | 163 | 9,630 | 203 | Cells | | 5/15/2012 | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | | | Polarized cells- 02 | Active | Photograph | | | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | 3,554 | 358,527 | 3,000 | Project Overview The Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation to generate Y-shaped branches from existing actin filaments. It remains unclear whether the Arp2/3 complex is truly important for leading edge extension in amoeboid form of cell motility. We have generated ARPC3+/- mice using a gene-trap ES cell line. To further investigate the function of the Arp2/3 complex in different motile cells we developed an approach to derive ARPC3+/+ and ARPC3-/- ES cells from blastocysts of ARPC3+/- crosses and differentiate them into fibroblasts cells. The deletion of ARPC3, a subunit of the Arp2/3 complex, resulted in a loss of lamellipodia structures. Interestingly, filopodia structures were observed. Cells without lamellipodia were able to migrate with similar speed compared to the wild-type cells. ARPC3-/- fibroblast cells exhibit defect in directional migration. ARPC3+/+ and ARPC3-/- primary fibroblast cells that are differentiated from the corresponding Mouse Embryonic stem cells. From: Suraneni, Praveen [PKS@stowers.org] Sent: Tuesday, April 10, 2012 3:34 PM To: Jegalian, Karin (NIH/NIGMS) [C] Subject: RE: On the Move Hi Jegalian, Thank you for the request, I can send you few images that are not submitted to JCB. Let me know how many do you need and source to upload them. Thank you, Praveen. From: Li, Rong [ mailto:RLI@stowers.org] Sent: Tuesday, April 10, 2012 11:44 AM To: Jegalian, Karin (NIH/NIGMS) [C] Cc: Suraneni, Praveen Subject: RE: On the Move Dear Karin, You are more than welcome to use our images, though I'm unsure about JCB's copyright policy. I imagine that they should be alright with it. We'll be happy to send you the high resolution images too. I'm copying the first author of this email. Best regards, Rong | Rong Li, Stowers Institute for Medical Research | | | 888 | 27,531 | 749 | | 1,777 | 109,442 | 1,500 | Cells | | 5/15/2012 | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | | | mDia1 antibody staining-01 | Active | Photograph | | Cells move forward with lamellipodia and filopodia supported by networks and bundles of actin filaments. Proper, controlled cell movement is a complex process. Recent research has shown that an actin-polymerizing factor called the Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation. In this photo, the ARPC3+/+ fibroblast cells were fixed and stained with Alexa 546 phalloidin for F-actin (red), mDia1 (green), and DAPI to visualize the nucleus (blue). mDia1 is localized at the lamellipodia of ARPC3+/+ fibroblast cells. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3328">3328</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3329">3329</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3331">3331</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3332">3332</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3333">3333</a>. | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | 2,852 | 3,199,156 | 2,880 | Project Overview The Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation to generate Y-shaped branches from existing actin filaments. It remains unclear whether the Arp2/3 complex is truly important for leading edge extension in amoeboid form of cell motility. We have generated ARPC3+/- mice using a gene-trap ES cell line. To further investigate the function of the Arp2/3 complex in different motile cells we developed an approach to derive ARPC3+/+ and ARPC3-/- ES cells from blastocysts of ARPC3+/- crosses and differentiate them into fibroblasts cells. The deletion of ARPC3, a subunit of the Arp2/3 complex, resulted in a loss of lamellipodia structures. Interestingly, filopodia structures were observed. Cells without lamellipodia were able to migrate with similar speed compared to the wild-type cells. ARPC3-/- fibroblast cells exhibit defect in directional migration. ARPC3+/+ and ARPC3-/- primary fibroblast cells that are differentiated from the corresponding Mouse Embryonic stem cells. From: Suraneni, Praveen [PKS@stowers.org] Sent: Tuesday, April 10, 2012 3:34 PM To: Jegalian, Karin (NIH/NIGMS) [C] Subject: RE: On the Move Hi Jegalian, Thank you for the request, I can send you few images that are not submitted to JCB. Let me know how many do you need and source to upload them. Thank you, Praveen. From: Li, Rong [ mailto:RLI@stowers.org] Sent: Tuesday, April 10, 2012 11:44 AM To: Jegalian, Karin (NIH/NIGMS) [C] Cc: Suraneni, Praveen Subject: RE: On the Move Dear Karin, You are more than welcome to use our images, though I'm unsure about JCB's copyright policy. I imagine that they should be alright with it. We'll be happy to send you the high resolution images too. I'm copying the first author of this email. Best regards, Rong | Rong Li, Stowers Institute for Medical Research | | | 684 | 72,701 | 690 | | 1,426 | 213,524 | 1,440 | Cells | | 5/15/2012 | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | | | Polarized cells- 01 | Active | Photograph | | | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | 1,397 | 60,384 | 1,200 | Project Overview The Arp2/3 complex is the key component of the actin polymerization engine that drives amoeboid cell motility. ARPC3, a component of the Arp2/3 complex, plays a critical role in actin nucleation to generate Y-shaped branches from existing actin filaments. It remains unclear whether the Arp2/3 complex is truly important for leading edge extension in amoeboid form of cell motility. We have generated ARPC3+/- mice using a gene-trap ES cell line. To further investigate the function of the Arp2/3 complex in different motile cells we developed an approach to derive ARPC3+/+ and ARPC3-/- ES cells from blastocysts of ARPC3+/- crosses and differentiate them into fibroblasts cells. The deletion of ARPC3, a subunit of the Arp2/3 complex, resulted in a loss of lamellipodia structures. Interestingly, filopodia structures were observed. Cells without lamellipodia were able to migrate with similar speed compared to the wild-type cells. ARPC3-/- fibroblast cells exhibit defect in directional migration. ARPC3+/+ and ARPC3-/- primary fibroblast cells that are differentiated from the corresponding Mouse Embryonic stem cells. From: Suraneni, Praveen [PKS@stowers.org] Sent: Tuesday, April 10, 2012 3:34 PM To: Jegalian, Karin (NIH/NIGMS) [C] Subject: RE: On the Move Hi Jegalian, Thank you for the request, I can send you few images that are not submitted to JCB. Let me know how many do you need and source to upload them. Thank you, Praveen. From: Li, Rong [ mailto:RLI@stowers.org] Sent: Tuesday, April 10, 2012 11:44 AM To: Jegalian, Karin (NIH/NIGMS) [C] Cc: Suraneni, Praveen Subject: RE: On the Move Dear Karin, You are more than welcome to use our images, though I'm unsure about JCB's copyright policy. I imagine that they should be alright with it. We'll be happy to send you the high resolution images too. I'm copying the first author of this email. Best regards, Rong | Rong Li, Stowers Institute for Medical Research | | | 349 | 5,526 | 299 | | 698 | 19,849 | 599 | Cells | | 5/15/2012 | | Rong Li and Praveen Suraneni, Stowers Institute for Medical Research | | | Four timepoints in gastrulation | Active | Video | | It has been said that gastrulation is the most important event in a person's life. This part of early embryonic development transforms a simple ball of cells and begins to define cell fate and the body axis. In a study published in <i>Science</i> magazine, NIGMS grantee Bob Goldstein and his research group studied how contractions of actomyosin filaments in <i>C. elegans</i> and <i>Drosophila</i> embryos lead to dramatic rearrangements of cell and embryonic structure. In these images, myosin (green) and plasma membrane (red) are highlighted at four timepoints in gastrulation in the roundworm C. elegans. The blue highlights in the top three frames show how cells are internalized, and the site of closure around the involuting cells is marked with an arrow in the last frame. See related image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3297">3297</a>. | | Chris Higgins, UNC Chapel Hill, and Liang Gao, Janelia Farm | | 3,699,370 | | | Bob Goldstein, University of North Carolina, Chapel Hill | | | 293 | 96,066 | 308 | | | | | Cells | | 5/16/2012 | | Bob Goldstein, University of North Carolina, Chapel Hill | | | Single-Molecule Imaging | Active | Photograph | | This is a super-resolution light microscope image taken by Hiro Hakozaki and Masa Hoshijima of NCMIR. The image contains highlighted calcium channels in cardiac muscle using a technique called dSTORM. The microscope used in the NCMIR lab was built by Hiro Hakozaki. | | National Center for Microscopy and Imaging Research | 1,896 | 2,026,840 | 2,400 | | Hiro Hakozaki and Masa Hoshijima, NCMIR | heart | | 455 | 133,673 | 575 | | 948 | 360,588 | 1,200 | Tools and Techniques | | 5/21/2012 | | Tom Deerinck, NCMIR | | | Artificial cilia exhibit spontaneous beating | Active | Photograph | | Researchers have created artificial cilia that wave like the real thing. Zvonimir Dogic and his Brandeis University colleagues combined just a few cilia proteins to create cilia that are able to wave and sweep material around--although more slowly and simply than real ones. The researchers are using the lab-made cilia to study how the structures coordinate their movements and what happens when they don't move properly. Featured in the August 18, 2011, issue of <em>Biomedical Beat</em>. | | Zvonimir Dogic Lab, Brandeis University | 425 | 108,953 | 2,329 | From: Timothy Sanchez [ mailto:tsanchez@brandeis.edu] Sent: Wednesday, June 27, 2012 10:33 AM To: Carlson, Emily (NIH/NIGMS) [E] Subject: cilia-like bundles high res images. Hello Emily, I am writing in response to the request you made to my PI, Zvonimir, for high res images of the beating bundles. I'm including the tiff stack, in case you want to rearrange the images, and also the 8x1 montage. Let me know if you need anything else, and thanks for covering our work. Best, Tim Sanchez *** Hi Dr. Dogic, We previously featured your work on the artificial cilia model in the NIGMS Biomedical Beat e-newsletter. We?d now like to feature it in an article on cilia for our Inside Life Science series. We?d like to include the still image that accompanied the Brandeis news release. If there are no copyright restrictions against using the image and you give us permission to feature it, please send me the highest resolution version you have and let me know who to credit. Would it also be OK if we add this to our collection of interesting research-related images? When we post images and videos in this gallery, we grant users permission to use them for educational, news media, or research purposes, provided that users credit the source of the image, i.e. you or whomever you indicate. Here is the brief description of your work for the cilia article, if you?re interested: ?Now, cilia can even be artificial. Zvonimir Dogic and his Brandeis University colleagues combined just a few cilia proteins to create cilia that are able to wave and sweep material around?although more slowly and simply than real ones. The researchers are using the lab-made cilia to study how the structures coordinate their movements and what happens when they don?t move properly.? Emily Emily Carlson Office of Communications and Public Liaison National Institute of General Medical Sciences www.nigms.nih.gov Phone:(301) 594-1515 Fax: (301) 402-0224 carlsone@nigms.nih.gov http://publications.nigms.nih.gov/biobeat/11-08-18/#1 | Zvonimir Dogic | cilium | | 56 | 28,001 | 308 | | 237 | 52,200 | 1,300 | Molecular Structures | | 6/27/2012 | | Zvonimir Dogic | | | Suicidal Stem Cells | Active | Photograph | | Embryonic stem cells store pre-activated Bax (red) in the Golgi, near the nucleus (blue). Featured in the June 21, 2012, issue of <em>Biomedical Beat</em>. | | Deshmukh Lab, UNC-Chapel Hill | 1,024 | 708,988 | 1,344 | From: Mohanish Deshmukh [ mailto:mohanish@med.unc.edu] Sent: Friday, June 08, 2012 12:07 PM To: Toledo, Chelsea (NIH/NIGMS) [C] Subject: Re: NIGMS grant GM078366 Chelsea, Thanks for your email and we are delighted that our work will be featured in the NIGMS e-newsletter. Attached are minor changes. Also attached are two higher res images. Let me know if you need it in a different format. You can certainly add this (these) images for your purpose. We are thankful for the support to conduct our research. Best, Mohanish On 6/5/2012 8:55 AM, Toledo, Chelsea (NIH/NIGMS) [C] wrote: Dear Professor Deshmukh, We'd like to feature your findings on stem cell suicide in the June issue of the NIGMS e-newsletter Biomedical Beat. Please review the attached summary and send me any comments or changes by Friday.(Note: your name and affiliation will be included in the article, just not in the main text.) Also, if available, please send me a high-resolution version of the attached image and let me know if it?s OK to feature this in our collection of research-related images at http://images.nigms.nih.gov/. When we post images in this gallery, we grant users permission to use them for educational, news media, or research purposes, provided that users credit the source of the image, i.e. you or whomever you indicate. We would very much like to add your striking image to this public repository, so please let me know if you give us permission to do so. Thanks so much, and congratulations on your publication in Molecular Cell. Sincerely, Chelsea Toledo, Contractor Office of Communications & Public Liaison National Institute of General Medical Sciences Email: Chelsea.Toledo@nih.gov Office: (301)496-7301 http://publications.nigms.nih.gov/biobeat/12-06-21/index.html | Mohanish Deshmukh | | | 256 | 7,401 | 336 | | 512 | 29,762 | 672 | Cells | | 6/18/2012 | | Mohanish Deshmukh | | | Sphingolipid S1P1 receptor | Active | Illustration | | The receptor is shown bound to an antagonist, ML056. | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 1,500 | 258,882 | 1,300 | | Raymond Stevens, The Scripps Research Institute | protein | | 375 | 72,751 | 325 | | 750 | 150,900 | 650 | Molecular Structures | | 8/13/2012 | | Raymond Stevens, The Scripps Research Institute | | | Beta 2-adrenergic receptor | Active | Illustration | | The receptor is shown bound to a partial inverse agonist, carazolol. | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 1,500 | 273,527 | 1,300 | | Raymond Stevens, The Scripps Research Institute | protein | | 375 | 76,348 | 325 | | 750 | 155,312 | 650 | Molecular Structures | | 8/13/2012 | | Raymond Stevens, The Scripps Research Institute | | | Hsp33 figure 2 | Active | Illustration | | Featured in the March 15, 2012 issue of <em>Biomedical Beat</em>. Related to Hsp33 Figure 1, <a href="/Pages/DetailPage.aspx?imageID2=3354">image 3354</a>. | | Ursula Jakob and Dana Reichmann, University of Michigan | 1,008 | 64,241 | 1,139 | -----Original Message----- From: Dana Reichmann [ mailto:danare@umich.edu] Sent: Wednesday, August 15, 2012 2:34 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: Hsp33 figure Hi Ursula said that it's fine with her. It would be nice to have names of both of us. Thanks Dana Sent from my iPad On Aug 15, 2012, at 9:29 PM, "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> wrote: > Do you mean Ursula J? Yes, please do. Thanks. Right now, we have her name in the image credit (that's how it appeared in the news release). Is that OK or should we add yours too? > > Alisa Zapp Machalek > Science Writing, Editing and Education National Institutes of > Health/NIGMS > 301-496-7301 phone > alisa.machalek@nih.gov > Follow us on Twitter and Facebook, > Order free, science education materials from > http://publications.nigms.nih.gov/order/ > > P Please conserve > > -----Original Message----- > From: Dana Reichmann [ mailto:danare@umich.edu] > Sent: Wednesday, August 15, 2012 2:11 PM > To: Machalek, Alisa Zapp (NIH/NIGMS) [E] > Subject: Re: Hsp33 figure > > It's fine with me but may be I should ask my former supervisor. I am sure she will approve this. > > > On Aug 15, 2012, at 8:42 PM, "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> wrote: > >> So I have your permission to include the image in our image gallery and to use it for any print or online materials? >> >> Alisa Zapp Machalek >> Science Writing, Editing and Education National Institutes of >> Health/NIGMS >> 301-496-7301 phone >> alisa.machalek@nih.gov >> Follow us on Twitter and Facebook, >> Order free, science education materials from >> http://publications.nigms.nih.gov/order/ >> >> P Please conserve http://publications.nigms.nih.gov/biobeat/12-03-15/#5 | | protein | | 241 | 10,203 | 272 | | 504 | 27,717 | 570 | Molecular Structures | | | | Ursula Jakob and Dana Reichmann, University of Michigan | | | H1 histamine receptor | Active | Illustration | | The receptor is shown bound to an inverse agonist, doxepin. | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 1,500 | 256,930 | 1,300 | | Raymond Stevens, The Scripps Research Institute | protein | | 375 | 77,678 | 325 | | 750 | 156,496 | 650 | Molecular Structures | | 8/13/2012 | | Raymond Stevens, The Scripps Research Institute | | | A2A adenosine receptor | Active | Illustration | | The receptor is shown bound to an inverse agonist, ZM241385. | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 1,500 | 228,765 | 1,200 | | Raymond Stevens, The Scripps Research Institute | protein | | 375 | 60,906 | 300 | | 750 | 131,383 | 600 | Molecular Structures | | 8/13/2012 | | Raymond Stevens, The Scripps Research Institute | | | Hsp33 figure 1 | Active | Illustration | | Featured in the March 15, 2012 issue of <em>Biomedical Beat</em>. Related to Hsp33 Figure 2, <a href="/Pages/DetailPage.aspx?imageID2=3355">image 3355</a>. | | Ursula Jakob and Dana Reichmann, University of Michigan | 932 | 785,075 | 1,100 | -----Original Message----- From: Dana Reichmann [ mailto:danare@umich.edu] Sent: Wednesday, August 15, 2012 2:34 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: Hsp33 figure Hi Ursula said that it's fine with her. It would be nice to have names of both of us. Thanks Dana Sent from my iPad On Aug 15, 2012, at 9:29 PM, "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> wrote: > Do you mean Ursula J? Yes, please do. Thanks. Right now, we have her name in the image credit (that's how it appeared in the news release). Is that OK or should we add yours too? > > Alisa Zapp Machalek > Science Writing, Editing and Education National Institutes of > Health/NIGMS > 301-496-7301 phone > alisa.machalek@nih.gov > Follow us on Twitter and Facebook, > Order free, science education materials from > http://publications.nigms.nih.gov/order/ > > P Please conserve > > -----Original Message----- > From: Dana Reichmann [ mailto:danare@umich.edu] > Sent: Wednesday, August 15, 2012 2:11 PM > To: Machalek, Alisa Zapp (NIH/NIGMS) [E] > Subject: Re: Hsp33 figure > > It's fine with me but may be I should ask my former supervisor. I am sure she will approve this. > > On Aug 15, 2012, at 8:42 PM, "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> wrote: > >> So I have your permission to include the image in our image gallery and to use it for any print or online materials? >> >> Alisa Zapp Machalek >> Science Writing, Editing and Education National Institutes of >> Health/NIGMS >> 301-496-7301 phone >> alisa.machalek@nih.gov >> Follow us on Twitter and Facebook, >> Order free, science education materials from >> http://publications.nigms.nih.gov/order/ >> >> P Please conserve http://publications.nigms.nih.gov/biobeat/12-03-15/#5 | | protein | | 223 | 17,425 | 263 | | 466 | 47,341 | 550 | Molecular Structures | | | | Ursula Jakob and Dana Reichmann, University of Michigan | | | Kappa opioid receptor | Active | Illustration | | The receptor is shown bound to an antagonist, JDTic. | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 1,500 | 221,376 | 1,300 | | Raymond Stevens, The Scripps Research Institute | protein | | 375 | 58,185 | 325 | | 750 | 125,099 | 650 | Molecular Structures | | 8/13/2012 | | Raymond Stevens, The Scripps Research Institute | | | Dopamine D3 receptor | Active | Illustration | | The receptor is shown bound to an antagonist, eticlopride | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 1,500 | 265,481 | 1,300 | | Raymond Stevens, The Scripps Research Institute | protein | | 375 | 74,320 | 325 | | 750 | 151,027 | 650 | Molecular Structures | | 8/13/2012 | | Raymond Stevens, The Scripps Research Institute | | | Nociceptin/orphanin FQ peptide opioid receptor | Active | Illustration | | The receptor is shown bound to an antagonist, compound-24 | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 1,500 | 211,720 | 1,300 | | Raymond Stevens, The Scripps Research Institute | protein | | 375 | 61,670 | 325 | | 750 | 124,324 | 650 | Molecular Structures | | 8/13/2012 | | Raymond Stevens, The Scripps Research Institute | | | Chemokine CXCR4 receptor | Active | Illustration | | The receptor is shown bound to a small molecule peptide called CVX15. | | Yekaterina Kadyshevskaya, The Scripps Research Institute | 1,500 | 249,496 | 1,200 | | Raymond Stevens, The Scripps Research Institute | protein | | 375 | 66,570 | 300 | | 750 | 140,482 | 600 | Molecular Structures | | 8/13/2012 | | Raymond Stevens, The Scripps Research Institute | | | Electrostatic map of the adeno-associated virus | Active | Illustration | | The new highly efficient parallelized DelPhi software was used to calculate the potential map distribution of an entire virus, the adeno-associated virus, which is made up of more than 484,000 atoms. Despite the relatively large dimension of this biological system, resulting in 815x815x815 mesh points, the parallelized DelPhi, utilizing 100 CPUs, completed the calculations within less than three minutes. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3375">image 3375</a>. | | Emil Alexov, Clemson University | 1,435 | 1,052,284 | 1,453 | Division: BBCB, PD: Paul Brazhnik Permission: Dear Chelsea, Here are two versions of the image attached. Please, select one according to your preference. Thanks, Emil > Thanks so much! Looking forward to seeing the variation. > > -----Original Message----- > From: ealexov@clemson.edu [ mailto:ealexov@clemson.edu] > Sent: Thursday, August 16, 2012 9:06 AM > To: Toledo, Chelsea (NIH/NIGMS) [C] > Subject: Re: NIGMS request for image > > Thank you, Chelsea. > > I am attaching an image of so called "Clemson Robot", an atomic-style > nano object in a shape of robot, holding in its hand a biological > macromolecule (barnase-barstar complex). This is not published yet. > > I am also sending you a link to YouTube: > > http://www.youtube.com/watch?v=CFVxUzXR4R8 > > where Clemson Robot images are made into a movie. > > In a couple of hours, I will send you a variation of the image of the > cover page of JCC. > > Best wishes, > > Emil > > > >> Professor Alexov- >> >> Congratulations on making the cover of the Journal of Computational >> Chemistry! The electrostatic field image is beautiful. >> >> NIGMS is always looking for images like that one for our public >> domain Image Gallery< http://images.nigms.nih.gov/>. I realize that >> the image on the JCC cover likely has copyright issues associated >> with it. Do you have anything similar that we might be able to use? >> >> Material in our Image Gallery is freely downloadable for educational, >> news media and research purposes, provided the source for each image >> is credited. You and your institution would be listed as the source. >> >> I appreciate your help in this matter and I look forward to hearing >> back from you. >> >> Sincerely, >> >> Chelsea Toledo, Contractor >> Office of Communications & Public Liaison National Institute of >> General Medical Sciences | | | | 344 | 34,389 | 349 | | 717 | 127,513 | 726 | Tools and Techniques | | | | Emil Alexov, Clemson University | | | Mouse cerebellum close-up | Active | Photograph | | The cerebellum is the brain's locomotion control center. Every time you shoot a basketball, tie your shoe or chop an onion, your cerebellum fires into action. Found at the base of your brain, the cerebellum is a single layer of tissue with deep folds like an accordion. People with damage to this region of the brain often have difficulty with balance, coordination and fine motor skills. For a lower magnification, see image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3639">3639</a>. <Br><Br>This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Tom Deerinck and Mark Ellisman, NCMIR | 563 | 149,362 | 751 | | Mark Ellisman, NCMIR | | | 141 | 20,518 | 188 | | 282 | 78,750 | 376 | Cells | | 8/15/2014 | Dulles airport 2014 | National Center for Microscopy and Imaging Research (NCMIR) | | | Electrostatic map of the adeno-associated virus with scale | Active | Illustration | | The new highly efficient parallelized DelPhi software was used to calculate the potential map distribution of an entire virus, the adeno-associated virus, which is made up of more than 484,000 atoms. Despite the relatively large dimension of this biological system, resulting in 815x815x815 mesh points, the parallelized DelPhi, utilizing 100 CPUs, completed the calculations within less than three minutes. Related to <a href="/pages/DetailPage.aspx?imageid2=3374">image 3374</a>. | | Emil Alexov, Clemson University | 1,462 | 1,065,207 | 1,489 | Division: BBCB, PD: Paul Brazhnik Permission: Dear Chelsea, Here are two versions of the image attached. Please, select one according to your preference. Thanks, Emil > Thanks so much! Looking forward to seeing the variation. > > -----Original Message----- > From: ealexov@clemson.edu [ mailto:ealexov@clemson.edu] > Sent: Thursday, August 16, 2012 9:06 AM > To: Toledo, Chelsea (NIH/NIGMS) [C] > Subject: Re: NIGMS request for image > > Thank you, Chelsea. > > I am attaching an image of so called "Clemson Robot", an atomic-style > nano object in a shape of robot, holding in its hand a biological > macromolecule (barnase-barstar complex). This is not published yet. > > I am also sending you a link to YouTube: > > http://www.youtube.com/watch?v=CFVxUzXR4R8 > > where Clemson Robot images are made into a movie. > > In a couple of hours, I will send you a variation of the image of the > cover page of JCC. > > Best wishes, > > Emil > > > >> Professor Alexov- >> >> Congratulations on making the cover of the Journal of Computational >> Chemistry! The electrostatic field image is beautiful. >> >> NIGMS is always looking for images like that one for our public >> domain Image Gallery< http://images.nigms.nih.gov/>. I realize that >> the image on the JCC cover likely has copyright issues associated >> with it. Do you have anything similar that we might be able to use? >> >> Material in our Image Gallery is freely downloadable for educational, >> news media and research purposes, provided the source for each image >> is credited. You and your institution would be listed as the source. >> >> I appreciate your help in this matter and I look forward to hearing >> back from you. >> >> Sincerely, >> >> Chelsea Toledo, Contractor >> Office of Communications & Public Liaison National Institute of >> General Medical Sciences | | | | 350 | 35,239 | 356 | | 731 | 130,388 | 745 | Tools and Techniques | | | | Emil Alexov, Clemson University | | | HIV Infected Cell | Active | Photograph | | The human immunodeficiency virus (HIV), shown here as tiny purple spheres, causes the disease known as AIDS (for acquired immunodeficiency syndrome). HIV can infect multiple cells in your body, including brain cells, but its main target is a cell in the immune system called the CD4 lymphocyte (also called a T-cell or CD4 cell). | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 1,127 | 259,354 | 1,502 | | Mark Ellisman, NCMIR | | | 270 | 24,353 | 359 | | 563 | 84,022 | 751 | Cells, Injury and Illness | | 8/22/2012 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | NCMIR mouse tail | Active | Photograph | | Stained cross section of a mouse tail. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 1,027 | 609,297 | 1,502 | | Mark Ellisman | | | 247 | 145,952 | 359 | | 513 | 166,798 | 751 | Cells | | 8/27/2012 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | NCMIR Intestine-1 | Active | Photograph | | The small intestine is where most of our nutrients from the food we eat are absorbed into the bloodstream. The walls of the intestine contain small finger-like projections called villi which increase the organ's surface area, enhancing nutrient absorption. It consists of the duodenum, which connects to the stomach, the jejenum and the ileum, which connects with the large intestine. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3390">image 3390</a>. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 1,128 | 470,759 | 1,502 | | Mark Ellisman | | | 270 | 39,590 | 359 | | 564 | 156,564 | 751 | Cells | | 8/22/2012 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | NCMIR human spinal nerve | Active | Photograph | | Spinal nerves are part of the peripheral nervous system. They run within the spinal column to carry nerve signals to and from all parts of the body. The spinal nerves enable all the movements we do, from turning our heads to wiggling our toes, control the movements of our internal organs, such as the colon and the bladder, as well as allow us to feel touch and the location of our limbs. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 1,127 | 315,197 | 1,264 | | Mark Ellisman | neurons | | 270 | 30,030 | 302 | | 563 | 113,797 | 632 | Cells | | 8/22/2012 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Synapses in culture | Active | Photograph | | Cultured hippocampal neurons grown on a substrate of glial cells (astrocytes). The glial cells form the pink/brown underlayment in this image. The tan threads are the neurons. The round tan balls are synapses, the points where neurons meet and communicate with each other. The cover slip underlying the cells is green. Neurons in culture can be used to study synaptic plasticity, activity-dependent protein turnover, and other topics in neuroscience. | | National Center for Microscopy and Imaging Research | 1,127 | 331,877 | 1,502 | From Tom D: For the image below, all the information is correct. These are cultured hippocampal neurons grown on a substrate of glial cells (astrocytes). In tissues these cells form very elaborate sheet-like projections that can wrap cells. In this case the cells form a very flat surface the neurons like to grow on (from a similar sample I took the image of a lone cultured astrocyte and you can see it in the NCMIR image gallery (look how flat the processes are in culture). We use cultures like this for a host of applications, including studying synaptic plasticity and activity-dependent protein turnover. _________________________ Alisa Zapp Machalek Science Writing, Editing and Education National Institutes of Health/NIGMS 301-496-7301 phone alisa.machalek@nih.gov Follow us on Twitter and Facebook, Order free, science education materials from http://publications.nigms.nih.gov/order/ ? Please conserve From: Machalek, Alisa Zapp (NIH/NIGMS) [E] Sent: Monday, October 28, 2013 11:16 AM To: deerinck@ncmir.ucsd.edu Cc: Reynolds, Sharon (NIH/NIGMS) [C]; Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: caption check--SEM of neural synapses in culture Here?s another one for you (and will be the last for a while). My notes indicate that the coverslip is green, glial cells are rose-brown and neurons are khaki (bulbous parts are synapses). Is that correct? What organ and organism is shown? Also, pardon my skepticism, but the rose-brown is so flat that it looks more like a type of fabric than cells. Is that just how the glial cells grow in culture? What kind of glial cells are they--astrocytes? Is there anything else you can tell me about why you took this picture, what it demonstrates, or what innovative technology it showcases? Thanks again, Alisa | | nerve cells | | 270 | 33,307 | 359 | | 563 | 116,262 | 751 | Cells | | 8/27/2012 | | National Center for Microscopy and Imaging Research | | | Myelinated axons 1 | Active | Photograph | | Myelinated axons in a rat spinal root. Myelin is a type of fat that forms a sheath around and thus insulates the axon to protect it from losing the electrical current needed to transmit signals along the axon. The axoplasm inside the axon is shown in pink. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3397">3397</a>. | | Tom Deerinck and Mark Ellisman, National Center for Microscopy and Imaging Research | 1,127 | 406,590 | 1,502 | | Mark Ellisman, NCMIR | nerve cells neurons | | 270 | 34,275 | 359 | | 563 | 131,530 | 751 | Cells | | 8/27/2014 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Myelinated axons 2 | Active | Photograph | | Top view of myelinated axons in a rat spinal root. Myelin is a type of fat that forms a sheath around and thus insulates the axon to protect it from losing the electrical current needed to transmit signals along the axon. The axoplasm inside the axon is shown in pink. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3396">3396</a>. | | Tom Deerinck and Mark Ellisman, National Center for Microscopy and Imaging Research | 1,127 | 392,007 | 1,502 | | Mark Ellisman, NCMIR | nerve cells neurons | | 270 | 34,079 | 359 | | 563 | 129,538 | 751 | Cells | | 8/27/2014 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Protein folding video | Active | Video | | Proteins are long chains of amino acids. Each protein has a unique amino acid sequence. It is still a mystery how a protein folds into the proper shape based on its sequence. Scientists hope that one day they can "watch" this folding process for any given protein. The dream has been realized, at least partially, through the use of computer simulation. | | Theoretical and Computational Biophysics Group | | 6,579,658 | | From: Jo Miller [ mailto:miller@ks.uiuc.edu] Sent: Wednesday, August 22, 2012 2:42 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Cc: Yanxin Liu; David Brandon Subject: Permission to use: Movie of jz300017c Request Form Hi Alisa, Please note that permission [below] has been granted from ACS to use the requested movie. Thanks, Jo ******************************** Jo Miller, MSW Administration and Publication Specialist NIH Center for Macromolecular Modeling and Bioinformatics 3151 Beckman Institute University of Illinois at Urbana-Champaign 405 N. Mathews Urbana, IL 61801 Tel: (217)244-8949 Fax: (217) 244-6078 Begin forwarded message: From: Eric Slater < E_Slater@acs.org> Date: August 22, 2012 12:47:39 PM CDT To: Lisa Dove < LDove@acs.org>, Jo Miller < miller@ks.uiuc.edu> Cc: Copyright < Copyright@acs.org>, Terri Lewandowski < TLewandowski@acs.org> Subject: RE: TCBG Movie of jz300017c Request Form Hi Lisa, The requested use is permissible under the JPA, Section I, paragraph 2, pertaining to Supporting Information. Please note that explicit permission from ACS is not required under this scenario, as SI may be used by the ACS and author. Thanks for checking with us. Best, Eric Eric S. Slater, Esq. Senior Manager, Copyright, Permissions, & Licensing Office of Secretary & General Counsel American Chemical Society 1155 Sixteenth Street, NW Washington, DC 20036 T: 202-872-4367 | F: 202-776-8112 | e_slater@acs.org | | | | | | | | | | | Molecular Structures, Tools and Techniques | | 8/22/2012 | | Theoretical and Computational Biophysics Group | | | NCMIR Kidney Glomeruli | Active | Photograph | | Stained glomeruli in the kidney. The kidney is an essential organ responsible for disposing wastes from the body and for maintaining healthy ion levels in the blood. It works like a purifier by pulling break-down products of metabolism, such as urea and ammonium, from the bloodstream for excretion in urine. The glomerulus is a structure that helps filter the waste compounds from the blood. It consists of a network of capillaries enclosed within a Bowman's capsule of a nephron, which is the structure in which ions exit or re-enter the blood in the kidney. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 1,127 | 368,277 | 1,502 | | Mark Ellisman | | | 270 | 33,931 | 359 | | 563 | 121,313 | 751 | Cells | | 8/27/2012 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Small blood vessels in a mouse retina | Active | Photograph | | Blood vessels at the back of the eye (retina) are used to diagnose glaucoma and diabetic eye disease. They also display characteristic changes in people with high blood pressure. In the image, the vessels appear green. It's not actually the vessels that are stained green, but rather filaments of a protein called actin that wraps around the vessels. Most of the red blood cells were replaced by fluid as the tissue was prepared for the microscope. The tiny red dots are red blood cells that remain in the vessels. The image was captured using confocal and 2-photon excitation microscopy for a project related to neurofibromatosis. | | National Center for Microscopy and Imaging Research | 1,132 | 390,118 | 1,502 | From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Monday, October 28, 2013 12:14 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: caption check--arterioles in mouse retina Hi Alisa, The caption information is correct. During the course of imaging retinal tissue using confocal and 2-photon excitation microscopy for a project related to work we did on neurofibromatosis, I saw this region of retinal vasculature that I found interesting. When most people think of actin they think of muscle, but neurons in the brain contain large amounts in dendritic spines (as well as other places) as do the endothelial cells surrounding vasculature throughout the organism. Most of the RBCs have been removed by vascular perfusion prior to imaging, but a few remain. Anything else? Best wishes, Tom D. On 10/28/13 7:40 AM, Machalek, Alisa Zapp (NIH/NIGMS) [E] wrote: Hi Tom, I?m going to be featuring a couple of your images on our Web site and would like to make sure that what I?m writing about them is accurate. Can you look over the caption below and let me know if you have any comments/corrections? (I?ll wordsmith it a bit, but want to make sure the basic facts are correct.) Small blood vessels (arterioles) in a mouse retina. Red blood cells are stained red. Actin proteins (stained green) control blood flow [and/or blood pressure?] by wrapping loops around the vessels, forming a mesh that, like muscles, can squeeze or relax. Is there something special about arterioles in the retina that persuaded you to focus on them? Do they squeeze and relax more than other arterioles? Are they just easy to prepare for microscopy? Was there an eye-related project you were working on? Or?? Also, is there anything special about the technique(s) used to obtain this image? Thanks, Alisa | Tom Deerinck and Mark Ellisman | | | 271 | 29,935 | 359 | | 566 | 117,931 | 751 | Cells, Tools and Techniques | | 8/27/2012 | | National Center for Microscopy and Imaging Research | | | NCMIR Intestine-2 | Active | Photograph | | The small intestine is where most of our nutrients from the food we eat are absorbed into the bloodstream. The walls of the intestine contain small finger-like projections called villi which increase the organ's surface area, enhancing nutrient absorption. It consists of the duodenum, which connects to the stomach, the jejenum and the ileum, which connects with the large intestine. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3389">image 3389</a>. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 962 | 331,854 | 1,202 | | Mark Ellisman | | | 230 | 27,950 | 287 | | 481 | 110,153 | 601 | Cells | | 8/22/2012 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Hsp33 Heat Shock Protein Inactive to Active | Active | Video | | When the heat shock protein hsp33 is folded, it is inactive and contains a zinc ion, stabilizing the redox sensitive domain (orange). In the presence of an environmental stressor, the protein releases the zinc ion, which leads to the unfolding of the redox domain. This unfolding causes the chaperone to activate by reaching out its "arm" (green) to protect other proteins. | | Ursula Jakob and Dana Reichmann, University of Michigan | | 1,437,867 | | It's fine with me to put it in the media Gallery. Let me know if you need a better description.. All the best Dana Sent from my iPad On Sep 10, 2012, at 3:29 PM, "Toledo, Chelsea (NIH/NIGMS) [C]" < chelsea.toledo@nih.gov> wrote: Thank you so much, Dana! This looks great. Just to double-check, is it ok with you for this to go in our Media Gallery? It will appear with the description you gave below, as well as a credit to you, Ursula Jakob, and the University of Michigan. Thanks! Chelsea From: Dana Reichmann [ mailto:danare@umich.edu] Sent: Saturday, September 08, 2012 6:37 PM To: Toledo, Chelsea (NIH/NIGMS) [C] Cc: Ursula Jakob Subject: Re: Time-sensitive: NIGMS image request Dear Chelsea, Please find the attached movie of Hsp33 in inactive (folded) and active (unfolded) states. Please let me know if you need me to make any corrections. thanks a lot Dana | | | | | | | | | | | Molecular Structures | | 9/11/2012 | | Dana Reichmann, University of Michigan | | | Disrupted vascular development in frog embryos | Active | Video | | | | Hye Ji Cha, Edward Marcotte and John Wallingford, University of Texas at Austin | | 4,290,112 | | Permission obtained through secure email exchange: Hye Ji, Thank you so much for all your help with my video project on your work. We?re really excited about featuring it in our upcoming e-newsletter. We were wondering if you might be able to send us the larger-resolution version of the vasculature video files you mentioned in our previous correspondence. We?d like to feature them in the video, as well as in our public domain Media Gallery. You and your institution would be credited in that entry. I realize that the files are too large to send via e-mail. Therefore, I?m about to send you a message via NIH?s Secure Email service for file-sharing. Here?s what you need to do to get the files to me: 1) You?ll receive a message from SecureEmailNotice@nih.gov. Click on the link within the message to access the Secure Email service. 2) From there you?ll have to register with a username and password. 3) You?ll receive an additional message with a link to activate your account. 4) Once your account is activated, you can sign in using your username and password. 5) When you sign in, you?ll see an alert that you?ve received a message. Click on the ?Received? link. 6) You may upload the files to the reply message by clicking ?Browse? and locating the files on your computer. The system will confirm with me that you?ve seen them. Thank you again for all your help! Let me know if you have questions. | | green fluorescent protein | | | | | | | | | Molecular Structures | | 9/11/2012 | | Hye Ji Cha, University of Texas at Austin | | | Disrupted and restored vasculature development in frog embryos | Active | Video | | | | Hye Ji Cha, Edward Marcotte and John Wallingford, University of Texas at Austin | | 863,772 | | Permission obtained through secure email exchange: Hye Ji, Thank you so much for all your help with my video project on your work. We?re really excited about featuring it in our upcoming e-newsletter. We were wondering if you might be able to send us the larger-resolution version of the vasculature video files you mentioned in our previous correspondence. We?d like to feature them in the video, as well as in our public domain Media Gallery. You and your institution would be credited in that entry. I realize that the files are too large to send via e-mail. Therefore, I?m about to send you a message via NIH?s Secure Email service for file-sharing. Here?s what you need to do to get the files to me: 1) You?ll receive a message from SecureEmailNotice@nih.gov. Click on the link within the message to access the Secure Email service. 2) From there you?ll have to register with a username and password. 3) You?ll receive an additional message with a link to activate your account. 4) Once your account is activated, you can sign in using your username and password. 5) When you sign in, you?ll see an alert that you?ve received a message. Click on the ?Received? link. 6) You may upload the files to the reply message by clicking ?Browse? and locating the files on your computer. The system will confirm with me that you?ve seen them. Thank you again for all your help! Let me know if you have questions. | | green fluorescent protein | | 284 | 61,149 | 308 | | | | | | | 9/11/2012 | | Hye Ji Cha, University of Texas at Austin | | | Normal vascular development in frog embryos | Active | Video | | | | Hye Ji Cha, Edward Marcotte and John Wallingford, University of Texas at Austin | | 4,642,993 | | Permission obtained through secure email exchange: Hye Ji, Thank you so much for all your help with my video project on your work. We?re really excited about featuring it in our upcoming e-newsletter. We were wondering if you might be able to send us the larger-resolution version of the vasculature video files you mentioned in our previous correspondence. We?d like to feature them in the video, as well as in our public domain Media Gallery. You and your institution would be credited in that entry. I realize that the files are too large to send via e-mail. Therefore, I?m about to send you a message via NIH?s Secure Email service for file-sharing. Here?s what you need to do to get the files to me: 1) You?ll receive a message from SecureEmailNotice@nih.gov. Click on the link within the message to access the Secure Email service. 2) From there you?ll have to register with a username and password. 3) You?ll receive an additional message with a link to activate your account. 4) Once your account is activated, you can sign in using your username and password. 5) When you sign in, you?ll see an alert that you?ve received a message. Click on the ?Received? link. 6) You may upload the files to the reply message by clicking ?Browse? and locating the files on your computer. The system will confirm with me that you?ve seen them. Thank you again for all your help! Let me know if you have questions. | | green fluorescent protein | | | | | | | | | | | 9/11/2012 | | Hye Ji Cha, University of Texas at Austin | | | Phenylalanine tRNA molecule | Active | Illustration | | Phenylalanine tRNA showing the anticodon (yellow) and the amino acid, phenylalanine (blue and red spheres). | | Patrick O'Donoghue and Dieter Soll, Yale University | 1,407 | 95,295 | 1,304 | For more detail on what the colors represent, see this exerpt from Patrick O'Donoghue's email: "I colored different parts of the molecule as follows: acceptor stem in violet; D-stem in red; anticodon stem in cyan; anticodon in yellow; variable loop in orange; T-stem in green." | Dieter Soll, Yale University | | | 352 | 37,419 | 326 | | 704 | 91,588 | 652 | Molecular Structures | | 9/13/2012 | | Patrick O'Donoghue and Dieter Soll, Yale University | | | LincRNA and gene regulatory proteins | Active | Illustration | | A LincRNA molecule, shown in red, serves as a scaffold for gene regulatory proteins, shown in grey. The DNA is represented as a grey double helix. | | John Rinn, Harvard University | | | | | John Rinn, Harvard University | | | 169 | 50,811 | 308 | | 198 | 64,570 | 360 | Genes | | 9/13/2012 | | | | | O2 reacting with a flavin-dependent enzyme | Active | Photograph | | | | Claudia McDonald and Bruce Palfey, Department of Biological Chemistry, University of Michigan | 2,587 | 528,206 | 2,000 | Dear Ms. Machalek: Please be advised that there are no copyright restrictions on the image provided to you by Dr. Bruce Palfey. On behalf of Dr. Palfey, the Department of Biological Chemistry and the University of Michigan, I grant the National Institutes of Health permission to put this image into the public domain. Sincerely, Craig Reynolds ------------------------------------------ Craig Reynolds, Chief Administrator University of Michigan Medical School Dept. of Biological Chemistry 5301 MSRB III 1150 W. Medical Center Dr., SPC 5606 Ann Arbor, MI 48109-0600 T: 734.763.0185 / F: 734.763.4581 E: creyno@umich.edu From: Machalek, Alisa Zapp (NIH/NIGMS) [E] [ mailto:MachaleA@nigms.nih.gov] Sent: Thursday, September 13, 2012 12:17 PM To: reynolds, Craig Cc: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: need your contribution of high-resolution images related to chemistry for NIGMS Hi Craig, Remarkably enough, all we need is a statement in writing (email is fine). So Bruce has sort of already done that below, but it would be nice if you could provide a more pithy version. How about this: There are no copyright restrictions on this image. We grant the National Institutes of Health permission to put this image into the public domain. Wouldn?t it be nice if all interactions with the gov?t were so easy?! Alisa | | protein | | 619 | 238,572 | 479 | | 1,293 | 212,361 | 1,000 | Chemistry, Biochemistry, and Pharmacology | | 9/17/2012 | | Department of Biological Chemistry, University of Michigan | | | Kluyveromyces polysporus Argonaute bound to guide RNA | Active | Illustration | | A segment of siRNA, shown in red, guides a "slicer" protein called Argonaute (multi-colored twists and corkscrews) to the target RNA molecules. | | Kotaro Nakanishi and David Weinberg, Massachusetts Institute of Technology | 284 | 96,961 | 308 | | David Bartel, Massachusetts Institute of Technology | | | 284 | 96,961 | 308 | | 284 | 96,961 | 308 | Molecular Structures | | 9/13/2012 | | Kotaro Nakanishi and David Weinberg, Massachusetts Institute of Technology | | | X-ray co-crystal structure of Src kinase bound to a DNA-templated macrocycle inhibitor 1 | Active | Illustration | | | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | 970 | 256,242 | 1,500 | From: Markus Seeliger [ mailto:markus@pharm.stonybrook.edu] Sent: Thursday, September 13, 2012 7:28 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E]; David Liu Subject: Re: need your contribution of high-resolution images related to chemistry for NIGMS Hi Alisa, please find attached the figures. WE are happy to give you permission to use the figures for any print or online publications from NIGMS or NIH as a whole and to put them into the publicly accessible NIGMS image gallery ( http://images.nigms.nih.gov/ ). As image credit ?Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University? would be great. The names of the images reflect short captions. I will send you 7 images total in a total of 3 emails for size issues. Please let me know if you would need any of the figures tweaked a bit - not a problem. Thank you again for giving us the opportunity to present the results of our NIGMS-funded work. Markus | | crystallography enzyme protein | | 232 | 39,148 | 359 | | 485 | 67,311 | 750 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 9/17/2012 | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | | | Active Site of E. coli response regulator PhoB | Active | Photograph | | Active site of <i>E. coli</i> response regulator PhoB. | | Ann Stock, Rutgers University | 8,000 | 5,989,779 | 8,000 | From a grantee in Barbara Gerrantana's portfolio in response to a call for images. Please note that a larger, hi-res TIFF version is available in the shared folder under: Images, Image_Gallery, Images_added_to_Image_Gallery, 2012. The file is named PhoB_hires. Here's the email giving permission to use it: From: Stock, Ann (BSC) Sent: Tuesday, September 11, 2012 6:12 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: need your contribution of high-resolution images related to chemistry for NIGMS Alisa, I have attached an image on a transparent background as a tiff file. The image shown here is much lower resolution than you have requested. I have an image at 8,000 x 8000 ( MB), but I will need access to file transfer to send it. I will attempt to do this through our university large file transfer system. Let me know if you have trouble retrieving the file. This is an original image that has not been published elsewhere. You have my permission to use my image for any print or online publications from NIGMS or NIH as a whole and can put it into the publicly accessible NIGMS image gallery ( http://images.nigms.nih.gov/ ). Caption can be: "active site of E. coli response regulator PhoB" Credit can appear as Ann Stock, Rutgers University. Ann Professor, Department of Biochemistry Associate Director, Center for Advanced Biotechnology and Medicine UMDNJ-Robert Wood Johnson Medical School 679 Hoes Lane Piscataway, New Jersey 08854-5627 Phone: (732) 235-4844 Fax: (732) 235-528 Email: stock@cabm.rutgers.edu | | | | 479 | 91,246 | 479 | | 1,000 | 192,733 | 1,000 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 9/17/2012 | | Ann Stock, Rutgers University | | | X-ray co-crystal structure of Src kinase bound to a DNA-templated macrocycle inhibitor 2 | Active | Illustration | | | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | 1,500 | 383,046 | 1,500 | Hi Alisa, please find attached the figures. WE are happy to give you permission to use the figures for any print or online publications from NIGMS or NIH as a whole and to put them into the publicly accessible NIGMS image gallery ( http://images.nigms.nih.gov/ ). As image credit ?Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University? would be great. The names of the images reflect short captions. I will send you 7 images total in a total of 3 emails for size issues. Please let me know if you would need any of the figures tweaked a bit - not a problem. Thank you again for giving us the opportunity to present the results of our NIGMS-funded work. Markus | | crystallography enzyme protein | | 359 | 48,921 | 359 | | 750 | 91,675 | 750 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 9/17/2012 | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | | | X-ray co-crystal structure of Src kinase bound to a DNA-templated macrocycle inhibitor 3 | Active | Illustration | | | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | 1,500 | 429,161 | 1,500 | From: Markus Seeliger [ mailto:markus@pharm.stonybrook.edu] Sent: Thursday, September 13, 2012 7:28 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E]; David Liu Subject: Re: need your contribution of high-resolution images related to chemistry for NIGMS Hi Alisa, please find attached the figures. WE are happy to give you permission to use the figures for any print or online publications from NIGMS or NIH as a whole and to put them into the publicly accessible NIGMS image gallery ( http://images.nigms.nih.gov/ ). As image credit ?Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University? would be great. The names of the images reflect short captions. I will send you 7 images total in a total of 3 emails for size issues. Please let me know if you would need any of the figures tweaked a bit - not a problem. Thank you again for giving us the opportunity to present the results of our NIGMS-funded work. Markus | | crystallography enzyme protein | | 359 | 50,946 | 359 | | 750 | 96,267 | 750 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 9/17/2012 | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | | | X-ray co-crystal structure of Src kinase bound to a DNA-templated macrocycle inhibitor 4 | Active | Illustration | | | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | 1,500 | 535,365 | 1,500 | Hi Alisa, I have submitted the grant and played with the figures. We create the original protein structures in pymol which only allows us to write out png files. Any chance that this will be good enough? Regarding small changes to the figures for copyright reasons: do you want the figure more illustrative or more scientifically more correct (I am trying to decide whether to swap colors for the ligand (image 2) or whether to color the ligand in one color scheme (image 3). If you let me know what you prefer, in terms of colors and views, I can adjust this and send you some examples before I render them to high resolution. Thanks Markus | | Xray, protein structure, crystallography, enzyme, protein | | 359 | 57,827 | 359 | | 750 | 108,161 | 750 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 9/17/2012 | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | | | X-ray co-crystal structure of Src kinase bound to a DNA-templated macrocycle inhibitor 6 | Active | Illustration | | | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | 1,500 | 356,597 | 1,500 | Hi Alisa, please find attached the figures. WE are happy to give you permission to use the figures for any print or online publications from NIGMS or NIH as a whole and to put them into the publicly accessible NIGMS image gallery ( http://images.nigms.nih.gov/ ). As image credit ?Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University? would be great. The names of the images reflect short captions. I will send you 7 images total in a total of 3 emails for size issues. Please let me know if you would need any of the figures tweaked a bit - not a problem. Thank you again for giving us the opportunity to present the results of our NIGMS-funded work. Markus | | Protein, sarcoma, crystallography, enzyme | | 359 | 46,867 | 359 | | 750 | 88,716 | 750 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 9/17/2012 | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | | | X-ray co-crystal structure of Src kinase bound to a DNA-templated macrocycle inhibitor 7 | Active | Illustration | | | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | 1,500 | 373,828 | 1,500 | Hi Alisa, please find attached the figures. WE are happy to give you permission to use the figures for any print or online publications from NIGMS or NIH as a whole and to put them into the publicly accessible NIGMS image gallery ( http://images.nigms.nih.gov/ ). As image credit ?Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University? would be great. The names of the images reflect short captions. I will send you 7 images total in a total of 3 emails for size issues. Please let me know if you would need any of the figures tweaked a bit - not a problem. Thank you again for giving us the opportunity to present the results of our NIGMS-funded work. Markus | | protein, sarcoma, crystallography, enzyme | | 359 | 47,773 | 359 | | 750 | 90,570 | 750 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 9/17/2012 | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | | | X-ray co-crystal structure of Src kinase bound to a DNA-templated macrocycle inhibitor 5 | Active | Illustration | | | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | 1,500 | 527,020 | 1,500 | Hi Alisa, I have submitted the grant and played with the figures. We create the original protein structures in pymol which only allows us to write out png files. Any chance that this will be good enough? Regarding small changes to the figures for copyright reasons: do you want the figure more illustrative or more scientifically more correct (I am trying to decide whether to swap colors for the ligand (image 2) or whether to color the ligand in one color scheme (image 3). If you let me know what you prefer, in terms of colors and views, I can adjust this and send you some examples before I render them to high resolution. Thanks Markus | | Computer, protein, crystallography, enzyme | | 359 | 57,725 | 359 | | 750 | 108,356 | 750 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 9/17/2012 | | Markus A. Seeliger, Stony Brook University Medical School and David R. Liu, Harvard University | | | Structure of Glutamate Dehydrogenase | Active | Photograph | | Some children are born with a mutation in a regulatory site on this enzyme that causes them to over-secrete insulin when they consume protein. We found that a compound from green tea (shown in the stick figure and by the yellow spheres on the enzyme) is able to block this hyperactivity when given to animals with this disorder. | | Thomas Smith, Donald Danforth Plant Science Center | 1,828 | 2,853,806 | 1,500 | Record of permission to use both of these: Hello Dr. Machalek, I am writing in response to a request from Dr. Gerratana for high resolution images in the chemistry field. We have some very nice photos of opium poppy and other poppy species being studied here at the Donald Danforth Plant Science Center in St. Louis. The PI is Dr. Toni Kutchan, a biochemist, who studies chemical pathways to plant natural product production. If you are interested in these images please let me know. We would be happy to share them. Take care, Judy | | GDH, trimers | | 438 | 126,098 | 359 | | 914 | 344,576 | 750 | Molecular Structures | | 9/17/2012 | | Judy Coyle, Donald Danforth Plant Science Center | | | Atomic Structure of Poppy Enzyme | Active | Photograph | | The atomic structure of the morphine biosynthetic enzyme salutaridine reductase bound to the cofactor NADPH. The substrate salutaridine is shown entering the active site. | | Toni M. Kutchan, Thomas Smith, R. Howard Berg, Donald Danforth Plant Science Center | 2,010 | 1,474,642 | 1,500 | Record of permission to use both of these: Hello Dr. Machalek, I am writing in response to a request from Dr. Gerratana for high resolution images in the chemistry field. We have some very nice photos of opium poppy and other poppy species being studied here at the Donald Danforth Plant Science Center in St. Louis. The PI is Dr. Toni Kutchan, a biochemist, who studies chemical pathways to plant natural product production. If you are interested in these images please let me know. We would be happy to share them. Take care, Judy | | flower | | 482 | 76,918 | 359 | | 1,005 | 172,007 | 750 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 9/17/2012 | | Judy Coyle, Donald Danforth Plant Science Center | | | Regeneration of Mouse Ears | Active | Photograph | | Normal mice, like the B6 breed pictured on the left, develop scars when their ears are pierced. The Murphy Roths Large (MRL) mice pictured on the right can grow back lost ear tissue thanks to an inactive version of the p21 gene. When researchers knocked out that same gene in other mouse breeds, their ears also healed completely without scarring. Journal Article: Clark, L.D., Clark, R.K. and Heber-Katz, E. 1998. A new murine model for mammalian wound repair and regeneration. Clin Immunol Immunopathol 88: 35-45. | | Doug Thayer, University of Pennsylvania School of Veterinary Medicine and Ellen Heber-Katz, The Wistar Institute | 576 | 98,062 | 350 | Here?s the permission: Dear Chelsea - You can use anything you like - I think it might be in a review but I don't remember - I know there was something when the paper came out on the NIGMS website - I will look for it - Best wishes, Ellen Dear Chelsea, The images you were interested in were not in the PNAS article - they are MRL (white) and B6 (black) Maybe we should talk. Ellen | | | | 284 | 65,379 | 308 | | 288 | 9,320 | 175 | | | 9/19/2012 | | Ellen Heber-Katz, The Wistar Institute | | | Red Poppy | Active | Photograph | | A red poppy. | | Toni M. Kutchan and R. Howard Berg, Donald Danforth Plant Science Center | 1,985 | 1,871,205 | 1,700 | Proof of permission for these: Hello Dr. Machalek, I am writing in response to a request from Dr. Gerratana for high resolution images in the chemistry field. We have some very nice photos of opium poppy and other poppy species being studied here at the Donald Danforth Plant Science Center in St. Louis. The PI is Dr. Toni Kutchan, a biochemist, who studies chemical pathways to plant natural product production. If you are interested in these images please let me know. We would be happy to share them. Take care, Judy Judy Coyle, Research Grant Coordinator Donald Danforth Plant Science Center 314-587-1427 | | flower | | 476 | 75,367 | 407 | | 992 | 181,654 | 850 | Chemistry, Biochemistry, and Pharmacology | | 9/17/2012 | | Judy Coyle, Donald Danforth Plant Science Center | | | White Poppy (cropped) | Active | Photograph | | | | Toni M. Kutchan and R. Howard Berg, Donald Danforth Plant Science Center | 1,268 | 1,102,244 | 1,500 | Proof of permission for these: Hello Dr. Machalek, I am writing in response to a request from Dr. Gerratana for high resolution images in the chemistry field. We have some very nice photos of opium poppy and other poppy species being studied here at the Donald Danforth Plant Science Center in St. Louis. The PI is Dr. Toni Kutchan, a biochemist, who studies chemical pathways to plant natural product production. If you are interested in these images please let me know. We would be happy to share them. Take care, Judy Judy Coyle, Research Grant Coordinator Donald Danforth Plant Science Center 314-587-1427 | | flower | | 304 | 53,536 | 359 | | 634 | 102,287 | 750 | Chemistry, Biochemistry, and Pharmacology | | 9/17/2012 | | Judy Coyle, Donald Danforth Plant Science Center | | | White Poppy | Active | Photograph | | | | Toni M. Kutchan and R. Howard Berg, Donald Danforth Plant Science Center | 1,316 | 1,004,521 | 1,700 | Proof of permission for these: Hello Dr. Machalek, I am writing in response to a request from Dr. Gerratana for high resolution images in the chemistry field. We have some very nice photos of opium poppy and other poppy species being studied here at the Donald Danforth Plant Science Center in St. Louis. The PI is Dr. Toni Kutchan, a biochemist, who studies chemical pathways to plant natural product production. If you are interested in these images please let me know. We would be happy to share them. Take care, Judy Judy Coyle, Research Grant Coordinator Donald Danforth Plant Science Center 314-587-1427 | | flower | | 315 | 58,420 | 407 | | 658 | 116,849 | 850 | Chemistry, Biochemistry, and Pharmacology | | 9/17/2012 | | Judy Coyle, Donald Danforth Plant Science Center | | | Antitoxin GhoS (Illustration 1) | Active | Illustration | | Structure of the bacterial antitoxin protein GhoS. GhoS inhibits the production of a bacterial toxin, GhoT, which can contribute to antibiotic resistance. GhoS is the first known bacterial antitoxin that works by cleaving the messenger RNA that carries the instructions for making the toxin. More information can be found in the paper: Wang X, Lord DM, Cheng HY, Osbourne DO, Hong SH, Sanchez-Torres V, Quiroga C, Zheng K, Herrmann T, Peti W, Benedik MJ, Page R, Wood TK. <a href=" http://www.ncbi.nlm.nih.gov/pubmed/22941047" target="_blank">A new type V toxin-antitoxin system where mRNA for toxin GhoT is cleaved by antitoxin GhoS</a>. Nat Chem Biol. 2012 Oct;8(10):855-61. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3428">3428</a>. | | Rebecca Page and Wolfgang Peti, Brown University and Thomas K. Wood, Pennsylvania State University | 658 | 170,560 | 1,195 | Permission below: Dear Tom and Alisa, I have not published any images related to GhoS outside of those in the NCB manuscript, so if the images are sufficiently different than those in the manuscript, then I definitely approve them for dissemination at the NIH. Please use the following credit: "Rebecca Page and Wolfgang Peti, Brown University and Thomas K. Wood, Pennsylvania State University". Thanks, Rebecca On Tue, Sep 18, 2012 at 4:39 PM, Thomas Wood < twood@engr.psu.edu> wrote: Dear Alisa, These images were not published so I do not believe they are restricted. I have copied the co-author, Rebecca Page, so that she may also indicate if she approves of their dissemination at NIH as her lab generated them for our publication. For the credit, I suggest, ?Rebecca Page, Brown University and Thomas K. Wood, Pennsylvania State University? Best regards,e Tom ________________________________________________________________ Thomas K. Wood Biotechnology Endowed Chair & Professor Departments of Chemical Engineering & Biochemistry and Molecular Biology Pennsylvania State University 161 Fenske Laboratory University Park, PA 16802 814-863-4811 (voice) 814-865-7846 (FAX) | | 3D | | 158 | 35,062 | 287 | | 329 | 52,894 | 598 | Molecular Structures | | 10/2/2012 | | Rebecca Page and Wolfgang Peti, Brown University and Thomas K. Wood, Pennsylvania State University | | | Enzyme transition states | Active | Illustration | | The molecule on the left is an electrostatic potential map of the van der Waals surface of the transition state for human purine nucleoside phosphorylase. The colors indicate the electron density at any position of the molecule. Red indicates electron-rich regions with negative charge and blue indicates electron-poor regions with positive charge. The molecule on the right is called DADMe-ImmH. It is a chemically stable analogue of the transition state on the left. It binds to the enzyme millions of times tighter than the substrate. This inhibitor is in human clinical trials for treating patients with gout. This image appears in Figure 4, Schramm, V.L. (2011) Annu. Rev. Biochem. 80:703-732. | | Vern Schramm, Albert Einstein College of Medicine of Yeshiva University | 4,251 | 1,433,031 | 8,560 | The publisher and Dr. Schramm have given permission for its inclusion in this gallery.<br><br> From: Rita Chang [ mailto:rchang@annualreviews.org] Sent: Thursday, October 04, 2012 4:20 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: image from 2011 Schramm paper Correct. From: Machalek, Alisa Zapp (NIH/NIGMS) [E] [ mailto:MachaleA@nigms.nih.gov] Sent: Thursday, October 04, 2012 1:12 PM To: Rita Chang Subject: RE: image from 2011 Schramm paper Thanks, Rita. This is good to hear. Just so I?m clear: As long as the image was not published elsewhere, NIH may use the image in various products (exhibit, printed material, Web sites) and put it into our public domain image gallery. Is that correct? Best, Alisa _________________________ Alisa Zapp Machalek From: Rita Chang [ mailto:rchang@annualreviews.org] Sent: Thursday, October 04, 2012 3:56 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: image from 2011 Schramm paper Dear Alisa, Dr. Schramm is free to use whatever portion of his Annual Review article he would like for the exhibit. The only caveat is if the figure was originally adapted from another journal; in that case, he/you may need to verify that that is okay with the other publisher. Hope that answers your question. Best, Rita -- Rita Chang Production Editor Annual Reviews 4139 El Camino Way Palo Alto, CA 94306 Email address: rchang@annualreviews.org Phone: (650) 843-6607 Fax: (650) 855-9815 | | purine, transition state, inhibitor | | 1,062 | 100,851 | 2,140 | | 2,125 | 359,537 | 4,280 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | | | Vern Schramm, Albert Einstein College of Medicine of Yeshiva University | | | Antitoxin GhoS (Illustration 2) | Active | Illustration | | Structure of the bacterial antitoxin protein GhoS. GhoS inhibits the production of a bacterial toxin, GhoT, which can contribute to antibiotic resistance. GhoS is the first known bacterial antitoxin that works by cleaving the messenger RNA that carries the instructions for making the toxin. More information can be found in the paper: Wang X, Lord DM, Cheng HY, Osbourne DO, Hong SH, Sanchez-Torres V, Quiroga C, Zheng K, Herrmann T, Peti W, Benedik MJ, Page R, Wood TK. <a href=" http://www.ncbi.nlm.nih.gov/pubmed/22941047" target="_blank">A new type V toxin-antitoxin system where mRNA for toxin GhoT is cleaved by antitoxin GhoS</a>. Nat Chem Biol. 2012 Oct;8(10):855-61. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3427">3427</a>. | | Rebecca Page and Wolfgang Peti, Brown University and Thomas K. Wood, Pennsylvania State University | 658 | 179,259 | 1,195 | Permission below: Dear Tom and Alisa, I have not published any images related to GhoS outside of those in the NCB manuscript, so if the images are sufficiently different than those in the manuscript, then I definitely approve them for dissemination at the NIH. Please use the following credit: "Rebecca Page and Wolfgang Peti, Brown University and Thomas K. Wood, Pennsylvania State University". Thanks, Rebecca On Tue, Sep 18, 2012 at 4:39 PM, Thomas Wood < twood@engr.psu.edu> wrote: Dear Alisa, These images were not published so I do not believe they are restricted. I have copied the co-author, Rebecca Page, so that she may also indicate if she approves of their dissemination at NIH as her lab generated them for our publication. For the credit, I suggest, ?Rebecca Page, Brown University and Thomas K. Wood, Pennsylvania State University? Best regards,e Tom ________________________________________________________________ Thomas K. Wood Biotechnology Endowed Chair & Professor Departments of Chemical Engineering & Biochemistry and Molecular Biology Pennsylvania State University 161 Fenske Laboratory University Park, PA 16802 814-863-4811 (voice) 814-865-7846 (FAX) | | 3D | | 158 | 36,546 | 287 | | 329 | 55,193 | 598 | Molecular Structures | | 10/2/2012 | | Rebecca Page and Wolfgang Peti, Brown University and Thomas K. Wood, Pennsylvania State University | | | Mouse mammary cells lacking anti-cancer protein | Active | Photograph | | Shortly after a pregnant woman gives birth, her breasts start to secrete milk. This process is triggered by hormonal and genetic cues, including the protein Elf5. Scientists discovered that Elf5 also has another job--it staves off cancer. Early in the development of breast cancer, human breast cells often lose Elf5 proteins. Cells without Elf5 change shape and spread readily--properties associated with metastasis. This image shows cells in the mouse mammary gland that are lacking Elf5, leading to the overproduction of other proteins (red) that increase the likelihood of metastasis. | | Rumela Chakrabarti, Princeton University | 2,048 | 478,819 | 2,048 | | | Mammal | | 512 | 18,578 | 512 | | 1,024 | 76,612 | 1,024 | Cells | | 11/15/2012 | | Nature Cell Biology, November 2012, Volume 14 No 11 pp1113-1231 | | | Flu virus proteins during self-replication | Active | Photograph | | Influenza (flu) virus proteins in the act of self-replication. Viral nucleoprotein (blue) encapsidates [encapsulates] the RNA genome (green). The influenza virus polymerase (orange) reads and copies the RNA genome. In the background is an image of influenza virus ribonucleoprotein complexes observed using cryo-electron microscopy. This image is from a November 2012 <a href=http:// www.eurekalert.org/pub_releases/2012-11/sri-sri112012.php target="blank"> <em>News Release</em></a>. | | Image courtesy of the Wilson, Carragher and Potter labs | 1,291 | 675,326 | 1,000 | | | Infectious emerging diseases, structure | | 309 | 55,922 | 239 | | 645 | 112,719 | 500 | Cells | | 11/27/2012 | | Scripps Research Institute in La Jolla, CA | | | Morphine Structure | Active | Illustration | | The chemical structure of the morphine molecule | | Toni M. Kutchan and R. Howard Berg, Donald Danforth Plant Science Center | 1,314 | 4,885,642 | 1,239 | Hello Dr. Machalek, I am writing in response to a request from Dr. Gerratana for high resolution images in the chemistry field. We have some very nice photos of opium poppy and other poppy species being studied here at the Donald Danforth Plant Science Center in St. Louis. The PI is Dr. Toni Kutchan, a biochemist, who studies chemical pathways to plant natural product production. If you are interested in these images please let me know. We would be happy to share them. Take care, Judy Judy Coyle, Research Grant Coordinator Donald Danforth Plant Science Center 314-587-1427 | | diagram | | 328 | 24,272 | 310 | | 657 | 57,407 | 620 | Molecular Structures | | 9/17/2012 | | Judy Coyle, Donald Danforth Plant Science Center | | | Network diagram of genes, cellular components and processes (unlabeled) | Active | Illustration | | | | Janusz Dutkowski and Trey Ideker, University of California, San Diego | 1,930 | 859,264 | 1,605 | Alisa, I'm attaching a version with no text. I think it is absolutely fine to add it to the image gallery. The credit is also good as you suggested. thanks! Janusz On Wed, Dec 19, 2012 at 10:53 AM, Machalek, Alisa Zapp (NIH/NIGMS) [E] < MachaleA@nigms.nih.gov> wrote: This is wonderful. Thanks! Just a few more questions: 1.) Is it OK to put it into the public domain by adding it to our image gallery? 2.) If so, how should the image credit appear? E.g., Janusz Dutkowski and Trey Ideker, University of California, San Diego 3.) Do you happen to have a version without labels? That will give us a bit more flexibility in using it. Thanks again, Alisa From: Janusz Dutkowski [ mailto:jdutkowski@gmail.com] Sent: Tuesday, December 18, 2012 7:29 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E]; Trey Ideker Cc: Lafee, Scott Subject: Re: permission to use graphic, upcoming Cell Reports paper Hi Alisa, I'm attaching a high-res image which should work. If not, please let me know. Thanks, Janusz On Tue, Dec 18, 2012 at 10:44 AM, Trey Ideker < trey.ideker@gmail.com> wrote: hi Alisa, Sure, we can get this to you -- I'm cc'ing Janusz, the study first author, who can provide you with the hi res version. As for the cell reports pub, this was supported by funding from both HG and GM. I'm cc'ing the study first author, Menzies Chen, who can send you the final copy of the paper. Thanks for helping us to promote this work! Trey | Janusz Dutkowski and Trey Ideker | chart | | 462 | 20,898 | 385 | | 965 | 64,377 | 803 | Tools and Techniques | | 1/22/2013 | | Janusz Dutkowski and Trey Ideker | | | Network diagram of genes, cellular components and processes (labeled) | Active | Illustration | | | | Janusz Dutkowski and Trey Ideker, University of California, San Diego | 4,091 | 2,364,829 | 3,282 | Alisa, I'm attaching a version with no text. I think it is absolutely fine to add it to the image gallery. The credit is also good as you suggested. thanks! Janusz On Wed, Dec 19, 2012 at 10:53 AM, Machalek, Alisa Zapp (NIH/NIGMS) [E] < MachaleA@nigms.nih.gov> wrote: This is wonderful. Thanks! Just a few more questions: 1.) Is it OK to put it into the public domain by adding it to our image gallery? 2.) If so, how should the image credit appear? E.g., Janusz Dutkowski and Trey Ideker, University of California, San Diego 3.) Do you happen to have a version without labels? That will give us a bit more flexibility in using it. Thanks again, Alisa _________________________ Alisa Zapp Machalek Science Writing, Editing and Education National Institutes of Health/NIGMS 301-496-7301 phone alisa.machalek@nih.gov Follow us on Twitter and Facebook, Order free, science education materials from http://publications.nigms.nih.gov/order/ ? Please conserve From: Janusz Dutkowski [ mailto:jdutkowski@gmail.com] Sent: Tuesday, December 18, 2012 7:29 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E]; Trey Ideker Cc: Lafee, Scott Subject: Re: permission to use graphic, upcoming Cell Reports paper Hi Alisa, I'm attaching a high-res image which should work. If not, please let me know. Thanks, Janusz On Tue, Dec 18, 2012 at 10:44 AM, Trey Ideker < trey.ideker@gmail.com> wrote: hi Alisa, Sure, we can get this to you -- I'm cc'ing Janusz, the study first author, who can provide you with the hi res version. As for the cell reports pub, this was supported by funding from both HG and GM. I'm cc'ing the study first author, Menzies Chen, who can send you the final copy of the paper. Thanks for helping us to promote this work! Trey | Janusz Dutkowski and Trey Ideker, UC San Diego | chart | | 982 | 69,778 | 788 | | 2,045 | 218,696 | 1,641 | Tools and Techniques | | 1/22/2013 | | Janusz Dutkowski and Trey Ideker, University of California, San Diego | | | Transcription factor Sox17 controls embryonic development of certain internal organs | Active | Photograph | | During embryonic development, transcription factors (proteins that regulate gene expression) govern the differentiation of cells into separate tissues and organs. Researchers at Cincinnati Children's Hospital Medical Center used mice to study the development of certain internal organs, including the liver, pancreas, duodenum (beginning part of the small intestine), gall bladder and bile ducts. They discovered that transcription factor Sox17 guides some cells to develop into liver cells and others to become part of the pancreas or biliary system (gall bladder, bile ducts and associated structures). The separation of these two distinct cell types (liver versus pancreas/biliary system) is complete by embryonic day 8.5 in mice. The transcription factors PDX1 and Hes1 are also known to be involved in embryonic development of the pancreas and biliary system. This image shows mouse cells at embryonic day 10.5. The green areas show cells that will develop into the pancreas and/or duodenum(PDX1 is labeled green). The blue area near the bottom will become the gall bladder and the connecting tubes (common duct and cystic duct) that attach the gall bladder to the liver and pancreas (Sox17 is labeled blue). The transcription factor Hes1 is labeled red. The image was not published. A similar image (different plane of the section) was published in: <b>Sox17 Regulates Organ Lineage Segregation of Ventral Foregut Progenitor Cells</b> Jason R. Spence, Alex W. Lange, Suh-Chin J. Lin, Klaus H. Kaestner, Andrew M. Lowy, Injune Kim, Jeffrey A. Whitsett and James M. Wells, Developmental Cell, Volume 17, Issue 1, 62-74, 21 July 2009. doi:10.1016/j.devcel.2009.05.012 | | Jason Spence and James M. Wells, Cincinnati Children's Hospital Medical Center | 3,000 | 1,561,767 | 3,000 | From: Wells, James (Jim) [ mailto:James.Wells@cchmc.org] Sent: Wednesday, November 28, 2012 10:34 AM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: NIH requesting permission to use image of your work Hi Alisa, I sent some images but they didn't seem to go thru. This attached is associated with the Dev Cell paper you reference. However, the image you sent me was from a Nature 2011 paper. Let me know which paper you want images for. Jim From: "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> Date: Wed, 28 Nov 2012 01:44:31 +0000 To: James Wells < James.Wells@cchmc.org> Cc: "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> Subject: NIH requesting permission to use image of your work Dr. Wells, A couple years ago, Erin Fults wrote about your work (Spence, et al, Developmental Cell 2009) for Findings magazine and we included the image below. We?re now producing a poster using images from Findings. May we include this image on the poster? If so, and if it?s not too much trouble, can you send me this image in the highest resolution (pixel-wise) version you have? I?d also be happy with another high-resolution/large image that looks essentially the same in terms of color and composition. Would we also have permission to include this image (or any others you have) in the NIGMS image gallery ( http://images.nigms.nih.gov/)? Images in this gallery are in the public domain and we encourage people to use them only for non-commercial purposes and to provide an image credit. If we can include this or other images, how would you like the credit(s) to appear? James M. Wells, Cincinnati Children's Hospital Medical Center? Or should credit go instead--or in addition--to someone else on your research team? Thanks much?and keep up the cool work! If you alert me when you have a major paper accepted for publication, I can work with your institution?s news office to publicize the work. Best, Alisa | | | | 750 | 55,974 | 750 | | 1,500 | 305,599 | 1,500 | Cells | | 3/13/2013 | | James M. Wells, Cincinnati Children's Hospital Medical Center | | | Cell division phases in Xenopus frog cells | Active | Photograph | | These images show three stages of cell division in Xenopus XL177 cells, which are derived from tadpole epithelial cells. They are (from top): metaphase, anaphase and telophase. The microtubules are green and the chromosomes are blue. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3443">3443</a>. | | Claire Walczak | 2,389 | 264,450 | 1,240 | Alisa Machalek obtained these images for use on a poster for the 2000 Congressional budget justification. In April 2013, Claire told Alisa that these images were the first digital ones to be taken on what was then the Mitchison's lab brand new microscope (which is now the 'old scope' in Claire's lab at Indiana University). All previous images were photographed using film. Claire still uses the metaphase image in her seminars. From: Claire Walczak [ mailto:cwalczak@indiana.edu] Sent: Tuesday, April 02, 2013 1:34 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: microtubule images for NIGMS image gallery HI Alisa, I will answer one by one so I have everything answered. On Apr 2, 2013, at 12:25 PM, "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> wrote: Thanks so much, Claire! Just so I have a written record, would you respond to this email indicating that these images have not been published and it's OK for us to put them into the public domain via our image gallery? Are the attached versions the highest resolution you have? If not and if it's easy for you would you send me the highest resolution ones? Yes- you have my permission to use these images in the picture gallery. I honestly don't know where the original data is- so it would be very cumbersome to locate it. Claire E. Walczak, Ph.D. Professor of Biochemistry Executive Director, IU-LMIC Medical Sciences Program Indiana University Myers Hall 262 915 East 3rd St. Bloomington, IN 47405 Ph: (812)855-5919 Fax: (812)855-6082 Email: cwalczak@indiana.edu | | Celluar, structure | | 446 | 40,937 | 300 | | 1,194 | 96,034 | 620 | Cells, Genes | | 4/3/2013 | | Claire Walczak, who took them while working as a postdoc in the laboratory of Timothy Mitchison | | | Interphase in Xenopus frog cells | Active | Photograph | | | | Claire Walczak | 2,598 | 1,948,405 | 2,067 | Alisa Machalek obtained these images for use on a poster for the 2000 Congressional budget justification. In April 2013, Claire told Alisa that these images were the first digital ones to be taken on what was then the Mitchison?s lab brand new microscope (which is now the ?old scope? in Claire?s lab at Indiana University). All previous images were photographed using film. From: Claire Walczak [ mailto:cwalczak@indiana.edu] Sent: Tuesday, April 02, 2013 1:34 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: microtubule images for NIGMS image gallery HI Alisa, I will answer one by one so I have everything answered. On Apr 2, 2013, at 12:25 PM, "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> wrote: Thanks so much, Claire! Just so I have a written record, would you respond to this email indicating that these images have not been published and it?s OK for us to put them into the public domain via our image gallery? Are the attached versions the highest resolution you have? If not?and if it?s easy for you?would you send me the highest resolution ones? Yes- you have my permission to use these images in the picture gallery. I honestly don't know where the original data is- so it would be very cumbersome to locate it. Claire E. Walczak, Ph.D. Professor of Biochemistry Executive Director, IU-LMIC Medical Sciences Program Indiana University Myers Hall 262 915 East 3rd St. Bloomington, IN 47405 Ph: (812)855-5919 Fax: (812)855-6082 e-mail: cwalczak@indiana.edu | | Celluar, structure | | 623 | 78,446 | 495 | | 1,299 | 229,580 | 1,033 | Cells, Genes | | 4/3/2013 | | Claire Walczak, who took them while working as a postdoc in the laboratory of Timothy Mitchison. | | | Taste buds signal different tastes through ATP release | Active | Photograph | | Taste buds in a mouse tongue epithelium with types I, II, and III taste cells visualized by cell-type-specific fluorescent antibodies. Type II taste bud cells signal sweet, bitter, and umami tastes to the central nervous system by releasing ATP through the voltage-gated ion channel CALHM1. Researchers used a confocal microscope to capture this image, which shows all taste buds in red, type II taste buds in green, and DNA in blue. <Br><Br> More information about this work can be found in the <em>Nature</em> letter <a href=" https://www.nature.com/articles/nature11906">"CALHM1 ion channel mediates purinergic neurotransmission of sweet, bitter and umami tastes”</a> by Taruno et. al. | | Aki Taruno, Perelman School of Medicine, University of Pennsylvania; Nature | 2,671 | 2,555,400 | 2,000 | From: Kreeger, Karen [ mailto:Karen.Kreeger@uphs.upenn.edu] Sent: Wednesday, April 10, 2013 11:57 AM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: taste buds image--permission to add to image gallery? Hi Alisa. It's been so long since we connected. I hope you are well. We're swamped here with regular requests and the Philadelphia Science Festival. Thanks for your interest in Dr. Foskett?s work. I'm sure it would be OK to use the image, as long as you use the image credit here in the release: http://www.uphs.upenn.edu/news/News_Releases/2013/03/foskett/ Please also send the link when it's ready. I will share with Dr. Foskett. I hope this helps. Cheers, Karen From: Machalek, Alisa Zapp (NIH/NIGMS) [E] [ mailto:MachaleA@nigms.nih.gov] Sent: Tuesday, April 09, 2013 4:45 PM To: Kreeger, Karen Subject: taste buds image--permission to add to image gallery? Hi Karen, How goes it? Still doing fine science writing in Philly, I see. As you may know, we're featuring your release about Kevin Foskett's work as a Research Advance slide on the NIGMS website (slide 4). I'd also like to add that gorgeous image to the NIGMS image and video gallery and possibly feature it in various NIGMS publications. Do we have permission to do this? I imagine the image is already in the public domain because of the way it's associated with your release, but I just wanted to check for sure. Hope you're well. With travel funds cut so drastically I don't know when I'll next make it to PA. But if you're ever in the D.C. area, let me know and we can meet up. Best, Alisa | From https://www.cellimagelibrary.org/images/44602: Fluorescence microscope image of a cryostat section of mouse tongue epithelium immuno-stained for all taste bud cells (red) type II taste bud cells (green)and counter-stained for DNA (blue). The image was selected for inclusion in the April 18th 2013 issue of the NIGMS Biomedical Beat that features noteworthy research results. Anesthetized mice were perfused with 4% paraformaldehyde, tongue epithelium dissected out, frozen, and 8 micrometer cryostat sections cut. Sections were immuno-stained for all taste buds (red, anti-KCNQ1, Alexa 586) and type II taste buds (green, anti-TRPM5, Alexa 488), counter-stained with DAPI (blue), and recorded with a Zeiss LSM 710 confocal microscope equipped with 40x NA 1.1 water immersion objective lens. The image shows a single confocal plane with the red, green, and blue channels merged. See also: Akiyuki T et al. 2013. CALHM1 ion channel mediates purinergic neurotransmission of sweet, bitter and umami tastes. Nature 495:223-226. The work was published in Nature (14 March 2013) and supported in part by the National Institutes of Health (GM56328, MH059937, NS072775, DC10393, EY13624, R03DC011143, P30 EY001583, P30DC011735). A news release: https://www.pennmedicine.org/news/news-releases/2013/march/how-the-bodys-energy-molecule | Mouth | | 641 | 70,796 | 479 | | 1,335 | 204,114 | 1,000 | Cells | | 4/9/2013 | | Aki Taruno, Perelman School of Medicine, University of Pennsylvania | | | Dividing cell in metaphase | Active | Photograph | | This image of a mammalian epithelial cell, captured in metaphase, was the winning image in the high- and super-resolution microscopy category of the 2012 GE Healthcare Life Sciences Cell Imaging Competition. The image shows microtubules (red), kinetochores (green) and DNA (blue). The DNA is fixed in the process of being moved along the microtubules that form the structure of the spindle. <br></br>The image was taken using the DeltaVision OMX imaging system, affectionately known as the "OMG" microscope, and was displayed on the NBC screen in New York's Times Square during the weekend of April 20-21, 2013. It was also part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Jane Stout and Claire Walczak, Indiana University | 750 | 1,688,436 | 750 | Hi Alisa, It was also great to hear from you as well. It has been so many years. I've attached the TIF image, which is higher resolution than the jpg image. I have other images, but they are all over the place right now and not in an easy condensed format. They are also of very recent data that is not yet published so we haven't decided which ones we will use for publication yet and which are the extras. Claire Hi Claire, I hope that no one you know was affected by the Boston bombings yesterday. How awful! It was so nice to chat with you the other day and I'm delighted to learn that you?re on the ASCB outreach committee. Please tell the group that I'd be happy to partner with them to help educate the public about the importance of basic research. I finally got permission from GE to put your OMG image into our public domain image gallery. Just checking--is the one posted as "print-quality" on http://newsinfo.iu.edu/pub/libs/images/usr/15146_h.jpg the highest resolution version you have? I'd also love to feature other pretty pictures from you, so feel free to send me some (free of any copyright restrictions) if you get a chance. We have a blog, a small Pinterest site and other outlets that would be great ways to highlight your work. Keep it up! Alisa From: Rebecca Caygill [ mailto:Rebecca.Caygill@collegehill.com] Hi Alisa, Thanks you for your email and sorry for the delay in responding. GE Healthcare Life Sciences have confirmed that you have permission to share Jane's image but ask that the NIH credit is as detailed below: Metaphase epithelial cell in metaphase stained for microtubules (red), kinetochores (green) and DNA (blue). Jane Stout, Indiana University, GE Healthcare 2012 Cell Imaging Competition. With best wishes, Rebecca | | Cell division, cell cycle, imaging, cell imaging, mitosis | | 168 | 13,014 | 168 | | 375 | 46,535 | 375 | Cells, Genes | | 4/16/2013 | Dulles exhibit 2014 | Jane Stout in the laboratory of Claire Walczak, Indiana University, GE Healthcare 2012 Cell Imaging Competition | | | Biofilm blocking fluid flow | Active | Video | | | | Knut Drescher, Princeton University | | 402,364 | | From: Bassler, Bonnie L. [ mailto:bbassler@Princeton.EDU] Sent: Monday, April 22, 2013 5:55 AM To: Ben-Ari, Elia (NIH/NIGMS) [C] Subject: Re: Please review: NIGMS story on your biofilm streamers PNAS paper Dear Elia This is fantastic! Thanks so much. It is perfect. We answered your questions in the attached draft and we made one minor change. And, sure, we grant you permission to use the movie and also to give it to other users for educational, news media, or research purposes, provided the users credits the source of the image/movie. We really appreciate that you wrote the story about our work. BB On 4/19/13 11:53 AM, "Ben-Ari, Elia (NIH/NIGMS) [C]" < elia.ben-ari@nih.gov> wrote: Dear Dr. Bassler, I'm a science writer who recently started working for the communications office at NIGMS. We plan to higlight the recent findings by you and your colleagues on biofilm streamer formation (reported in PNAS), and the related video, in our publication series, Inside Life Science< http://publications.nigms.nih.gov/insidelifescience/>, which also runs on the public science news site LiveScience< http://www.livescience.com/>. These stories are written for the general public. Would you be able to get any corrections or comments back to me by next Wednesday, April, 24? I've included a couple of specific queries for you in the comments field. Also, please let me know if it would be OK to feature this movie in our collection of research-related multimedia at http://images.nigms.nih.gov/. When we post videos and images in this gallery, we grant users permission to use them for educational, news media, or research purposes, provided that users credit the source of the image. Thanks, and I look forward to hearing from you. Elia | | structure | | 164 | 54,834 | 308 | | | | | Cells | | 4/25/2013 | | Bonnie Bassler, Princeton University | | | Dynamin Fission | Active | Photograph | | Time lapse series shows short dynamin assemblies (not visible) constricting a lipid tube to make a "beads on a string" appearance, then cutting off one of the beads i.e., catalyzing membrane fission). The lipids are fluorescent (artificially colored). Ramachandran R, Pucadyil T.J., Liu Y.W., Acharya S., Leonard M., Lukiyanchuk V., Schmid S.L. 2009. <em><a href=" http://www.ncbi.nlm.nih.gov/pubmed/19776347?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1">Membrane insertion of the pleckstrin homology domain variable loop 1 is critical for dynamin-catalyzed vesicle scission.</a></em> Mol Biol Cell. 2009 20:4630-9. | | Rajesh Ramachandran, Thomas J. Pucadyil, Ya-Wen Liu, Sharmistha Acharya, Marilyn Leonard, Vasyl Lukiyanchuk, and Sandra L. Schmid, The Scripps Research Institute | 1,004 | 447,954 | 1,604 | The image is a subset of a cover image we used for MBoC. MBoC has open copyright policy (see below). We just have to cite the paper. Ramachandran R*, Pucadyil T.J.*, Liu Y.W., Acharya S., Leonard M., Lukiyanchuk V., Schmid S.L. 2009. Membrane insertion of the pleckstrin homology domain variable loop 1 is critical for dynamin-catalyzed vesicle scission. Mol Biol Cell. 2009 20:4630-9 The first two authors contributed equally, so it should be cited as Ramachandran, Pucadyil et al. if you don't list all authors (a pet peeve about shared credit and team work). License and Publishing Agreement Authors retain the copyright and the right to reprint the manuscript in any publication of which authors serve as an author or editor, subject to proper citation of the manuscript in MBoC and where feasible the presence of a link to the original publication of the manuscript in MBoC. Also, authors are permitted to post the MBoC PDF of their articles (and/or supplemental material) on their personal websites or in an online institutional repository provided there appears always the proper citation of the manuscript in MBoC and a link to the original publication of the manuscript in MBoC. (Authors agree not to post the unedited accepted manuscript as it appears in MBoC In Press.) Authors further retain the right to revise, adapt, prepare derivative works, present, or distribute the manuscript provided that all such distribution is for noncommercial benefit and there appears always the proper citation of the manuscript in MBoC and where feasible a link to the original publication of the manuscript in MBoC. Under the License and Publishing Agreement, authors grant to the general public, effective two months after publication of (i.e.,. the appearance of) the edited manuscript in an online issue of MBoC, the nonexclusive right to copy, distribute, or display the manuscript subject to the terms of ( http://creativecommons.org/licenses/by-nc-sa/3.0). | | | | 240 | 11,011 | 385 | | 502 | 30,419 | 802 | Molecular Structures | | 5/16/2013 | | Ramachandran, Pucadyil et al. , The Scripps Research Institute | | | Calcium uptake during ATP production in mitochondria | Active | Photograph | | Living primary mouse embryonic fibroblasts. Mitochondria (green) stained with the mitochondrial membrane potential indicator, rhodamine 123. Nuclei (blue) are stained with DAPI. Caption from a November 26, 2012 <a href= " http://www.uphs.upenn.edu/news/News_Releases/2012/11/energy/">news release </a> from U Penn (Penn Medicine). | | Lili Guo, Perelman School of Medicine, University of Pennsylvania | 632 | 260,920 | 480 | From: Kevin Foskett [ mailto:foskett@mail.med.upenn.edu] Sent: Wednesday, May 15, 2013 11:14 AM To: Kreeger, Karen Subject: Re: Permission from NIGMS to use another image it was not in the Nature Cell Bio paper. On May 15, 2013, at 10:32 AM, "Kreeger, Karen" < Karen.Kreeger@uphs.upenn.edu> wrote: Great. I have copied Kevin and Lili on this to make sure. They have both said yes for the permission request. Lili, Kevin, the image wasn?t in the Nature paper, correct? Cheers, Karen From: Machalek, Alisa Zapp (NIH/NIGMS) [E] [ mailto:MachaleA@nigms.nih.gov] Sent: Wednesday, May 15, 2013 10:15 AM To: Kreeger, Karen Subject: RE: Permission from NIGMS to use another image Thanks! So, just to be sure?the image in the release was not published in the Nature Cell Bio paper and is free of any copyright restrictions, right? From: Kreeger, Karen [ mailto:Karen.Kreeger@uphs.upenn.edu] Sent: Wednesday, May 15, 2013 10:04 AM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: FW: Permission from NIGMS to use another image Hi again! See below for permission from Lili Guo. Cheers, KK -----Original Message----- From: Lili Guo [ mailto:guolili@mail.med.upenn.edu] Sent: Wednesday, May 15, 2013 9:57 AM To: Kreeger, Karen Cc: Kevin Foskett Subject: Re: Permission from NIGMS to use another image It will be my pleasure. -Lili ----- Original Message ----- From: "Karen Kreeger" < Karen.Kreeger@uphs.upenn.edu> To: "Kevin Foskett" < foskett@mail.med.upenn.edu>, "Lili Guo" < guolili@mail.med.upenn.edu> Sent: Wednesday, May 15, 2013 9:37:33 AM Subject: Permission from NIGMS to use another image Hello Lili and Kevin: Alisa Zapp Machalek, who covers science writing, editing and education for NIGMS would like permission to include the image below from the Nature Cell Biology release ( http://www.uphs.upenn.edu/news/News_Releases/2012/11/energy/ ) in their public domain image library. Would this be OK with you? | | | | 151 | 6,064 | 114 | | 316 | 20,725 | 240 | Cells, Molecular Structures | | 5/16/2013 | Ca2+ flux across the inner mitochondrial membrane regulates cell bioenergetics, cytoplasmic Ca2+ signals and activation of cell death pathways. Ca2+ uptake from the cytoplasm is driven by the electrochemical gradient generated during ATP production, mediated by a Ca2+ ion channel called the mitochondrial Ca2+ uniporter. Molecular components of the uniporter include MCU, the Ca2+ conducting pore, and MICU1, a MCU regulator that limits Ca2+ permeation through MCU at rest. MCUR1 is as an essential third component of the uniporter complex. In the absence of MCUR1, mitochondrial Ca2+ uptake is markedly reduced, with adverse cellular consequences, including compromised cellular bioenergetics, diminished oxidative phosphorylation and activation of autophagy. | Lili Guo, Perelman School of Medicine, University of Pennsylvania | | | Proteasome | Active | Photograph | | This fruit fly spermatid recycles various molecules, including malformed or damaged proteins. Actin filaments (red) in the cell draw unwanted proteins toward a barrel-shaped structure called the proteasome (green clusters), which degrades the molecules into their basic parts for re-use.
| | Sigi Benjamin-Hong, Rockefeller University | 545 | 83,955 | 500 | From: Hermann Steller [ mailto:steller@mail.rockefeller.edu] Sent: Wednesday, May 08, 2013 9:36 AM To: Piergrossi, Joe (NIH/NIGMS) [C] Subject: Re: Possible feature in NIH's Biomedical Beat news digest Hi Joe, Sure, a high-resolution file is attached (you may consider cropping it). Also, I trust the changes I suggested are acceptable? Best, Hermann -- Hermann Steller, Ph.D. Strang Professor and Investigator Howard Hughes Medical Institute The Rockefeller University 1230 York Ave. New York, NY 10021 Tel.: 212-327-7075 Fax: 212-327-7076 E-mail: steller@mail.rockefeller.edu From: <Piergrossi>, "Joe [C] (NIH/NIGMS)" < joe.piergrossi@nih.gov> Date: Wednesday, May 8, 2013 9:30 AM To: Hermann Steller < steller@rockefeller.edu> Subject: RE: Possible feature in NIH's Biomedical Beat news digest Hi Dr. Steller, If we do have permission to use the image in the press release, could we get a higher-resolution version? Thanks, Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | | | | 130 | 34,012 | 119 | | 272 | 40,941 | 250 | Cells, Molecular Structures | | 5/16/2013 | Featured in the May 16, 2013, issue of Biomedical Beat. | Sigi Benjamin-Hong, Rockefeller University | | | Automated Worm Sorter - 4 | Active | Photograph | | Georgia Tech associate professor Hang Lu holds a microfluidic chip that is part of a system that uses artificial intelligence and cutting-edge image processing to automatically examine large number of nematodes used for genetic research. | | Georgia Tech/Gary Meek | 1,993 | 889,465 | 3,000 | Alisa, Thanks for your note ? and for letting me know about the email problem. For a great technological university, we often don?t have great technology. We use a freelance photographer, Gary Meek. Our agreement with him allows use of the images for any Georgia Tech promotional purpose. If you used them in an NIH publication or website and mentioned Georgia Tech in connection with the image, that would be within our rights. The photographer would not want them used a stock art. However, if there are specific images you?d like, I can ask his permission to make those available. I don?t know that much about Hang Lu, but she?s a great interview and good at explaining things. I was in a meeting an hour ago when we were talking about wanting to do features on the people involved in research. We feel that we ought to be telling the human story more than we are. If you?d like to contact Hang, I?m sure she?d be pleased to work with you. Thanks, John Toon, Manager Research News & Publications Office Georgia Institute of Technology 75 Fifth Street, N.W., Suite 314 Atlanta, Georgia 30308 USA 404-894-6986 | | disease mechanisms, illness progression | | 478 | 29,442 | 719 | | 996 | 96,521 | 1,500 | Genes, Tools and Techniques | | 6/4/2013 | | Georgia Tech/Gary Meek | | | Electrode probe on mouse Huntington's muscle cell | Active | Photograph | | Using an electrode, researchers apply an electrical pulse onto a piece of muscle tissue affected by Huntington's disease. | | Grigor Varuzhanyan and Andrew A. Voss, California State Polytechnic University | 389 | 200,147 | 648 | Dear Joe, That is fantastic, thank you! Two copies of the image are attached. Unfortunately, they are not high resolution since the photo was taken with a cell phone. You have permission to use the photo. Can please credit the image to ?Grigor Varuzhanyan and Andrew A. Voss?? Thanks again. Best, Andy Andrew Voss, Ph.D. Assistant Professor Biological Sciences California State Polytechnic University, Pomona Phone: (909) 869-2463 http://www.csupomona.edu/~aavoss | Andrew A. Voss | electric | | 185 | 77,794 | 308 | | 194 | 11,915 | 324 | Cells, Tools and Techniques | | 6/14/2013 | | Grigor Varuzhanyan and Andrew A. Voss, California State Polytechnic University | | | Structure of telomerase | Active | Illustration | | Scientists recently discovered the full molecular structure of telomerase, an enzyme important to aging and cancer. Within each cell, telomerase maintains the telomeres, or end pieces, of a chromosome, preserving genetic data and extending the life of the cell. In their study, a team from UCLA and UC Berkeley found the subunit p50, shown in red, to be a keystone in the enzyme's structure and function. Featured in the May 16, 2013 issue of <em>Biomedical Beat</em>. | | Jiansen Jiang, Edward J. Miracco, Z. Hong Zhou and Juli Feigon, University of California, Los Angeles; Kathleen Collins, University of California, Berkeley | 2,363 | 1,514,948 | 2,100 | Dear Joe, Attached is the figure you requested. Please let us know if this is not high enough resolution. For the image, you can credit Jiansen Jiang, Edward Miracco, Hong Zhou, Kathleen Collins, and Juli Feigon. Thanks! Juli On May 7, 2013, at 7:07 AM, "Piergrossi, Joe (NIH/NIGMS) [C]" < joe.piergrossi@nih.gov> wrote: Dear Drs. Feigon, Collins and Zhou, We'd like to include a brief summary of your recent work in the May issue of the NIGMS monthly e-newsletter Biomedical Beat. Please review the summary below and send me comments by Friday, May 10. Also, if available, please send me a high-resolution version of the attached image and let me know if it's OK to feature this in our collection of research-related images at http://images.nigms.nih.gov/. When we post images in this gallery, we grant users permission to use them for educational, news media, or research purposes, provided that users credit the source of the image, i.e. you or whomever you indicate. We would very much like to add your striking image to this public repository, so please let me know if you give us permission to do so. Thanks! Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences http://publications.nigms.nih.gov/biobeat/#4 | | enzyme, DNA, gene, cell division | | 567 | 89,188 | 503 | | 1,181 | 232,251 | 1,050 | Molecular Structures | | 5/20/2013 | | Jiansen Jiang, Edward J. Miracco, Z. Hong Zhou and Juli Feigon, University of California, Los Angeles; Kathleen Collins, University of California, Berkeley | | | Sticky stem cells | Active | Photograph | | Like a group of barnacles hanging onto a rock, these human cells hang onto a matrix coated glass slide. Actin stress fibers, stained magenta, and the protein vinculin, stained green, make this adhesion possible. The fibroblast nuclei are stained blue. | | Ankur Singh and Andrés García, Georgia Institute of Technology | 1,024 | 354,655 | 1,024 | From: Andres J. Garcia [ mailto:andres.garcia@me.gatech.edu] Sent: Tuesday, May 07, 2013 12:43 PM To: Piergrossi, Joe (NIH/NIGMS) [C] Subject: RE: We'd like to feature your work on an NIH research news digest Importance: High Hi Joe, Attached is the high quality image and edits on the write-up. Best and thanks Andrés J. García, Ph.D. Woodruff Professor Woodruff School of Mechanical Engineering Petit Institute for Bioengineering and Bioscience Georgia Institute of Technology 2310 IBB Building 315 Ferst Drive Atlanta, GA 30332-0363 phone: 404-894-9384 fax: 404-385-1397 email: andres.garcia@me.gatech.edu url: http://www.garcialab.gatech.edu/ Admin. Assistant: Deidra Johnson, 404-894-7406 From: Piergrossi, Joe (NIH/NIGMS) [C] [ mailto:joe.piergrossi@nih.gov] Sent: Tuesday, May 07, 2013 10:37 AM To: andres.garcia@me.gatech.edu Subject: We'd like to feature your work on an NIH research news digest Dear Dr. García, We?d like to include a brief summary of your recent work in the May issue of the NIGMS monthly e-newsletter Biomedical Beat. Please review the attached summary and send me comments by Friday, May 10. Also, if available, please send me a high-resolution version of the attached image and let me know if it?s OK to feature this in our collection of research-related images at http://images.nigms.nih.gov/. When we post images in this gallery, we grant users permission to use them for educational, news media, or research purposes, provided that users credit the source of the image, i.e. you or whomever you indicate. We would very much like to add your striking image to this public repository, so please let me know if you give us permission to do so. The text below will accompany the image as an extended caption. We?d like to know as well, to what are the fibroblast cells in the image adhering? Thanks! Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences | | Structure | | 256 | 9,396 | 256 | | 512 | 53,486 | 512 | Cells | | 5/20/2013 | | Ankur Singh and Andrés García, Georgia Institute of Technology | | | HIV Capsid | Active | Illustration | | This image is a computer-generated model of the approximately 4.2 million atoms of the HIV capsid, the shell that contains the virus' genetic material. Scientists determined the exact structure of the capsid and the proteins that it's made of using a variety of imaging techniques and analyses. They then entered these data into a supercomputer that produced the atomic-level image of the capsid. This structural information could be used for developing drugs that target the capsid, possibly leading to more effective therapies. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6601">6601</a>. | | Juan R. Perilla and the Theoretical and Computational Biophysics Group, University of Illinois at Urbana-Champaign | 894 | 1,064,199 | 1,576 | That's the water box, and ions (e.g. physiological conditions). Yes, youc an use but please credit me (Juan R. Perilla) and The theoretical and Computational Biophysics Group, University of Illinois Urbana-Champaign Juan R. Perilla NIH Biomedical Technology Center for Macromolecular Modeling and Bioinformatics Theoretical and Computational Biophysics Group ( http://www.ks.uiuc.edu/) University of Illinois at Urbana-Champaign 3143 Beckman Institute for Advanced Science and Technology 405 N. Mathews Urbana, IL 61801 Phone: +1 (217) 244 - 7403 | Peijun Zhang, Angela Gronenborn, Klaus Schulten | 3D structure | | 214 | 23,338 | 378 | | 447 | 78,077 | 788 | Cells, Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 6/14/2013 | | Juan R. Perilla and the Theoretical and Computational Biophysics Group, University of Illinois at Urbana-Champaign | | | DDR2 Receptors Attach to Collagen in Breast Tumor | Active | Photograph | | On the left, the boundary of a breast tumor (yellow) attaches to collagen fibers that are closest to it (green) using DDR2. On the right, a tumor without DDR2 remains disconnected from the collagen. | | Callie Corsa and Suzanne Ponik, Washington University School of Medicine in St. Louis | 374 | 304,226 | 749 | Joe, Great. Happy that you are happy with the work. I have attached another image that more clearly defines the major result as it is pseudo-coloured. It was used by the Cell migration gateway (NIH supported) when they highlighted the work but probably is OK for you to use as well. Let me know if there is anything else you would like. Best, Greg Greg Longmore Professor of Medicine, Cell Biology and Physiology BRIGHT Institute Washington University School of Medicine BJCIH 7th floor BRIGHT Institute Campus Box 8069 660 South Euclid Avenue St. Louis MO 63110 Phone: 314-362-8834 | Gregory Longmore | Biomechanical, structure | | 89 | 4,509 | 180 | | 187 | 16,531 | 375 | Cells | | 6/14/2013 | | Callie Corsa and Suzanne Ponik, Washington University School of Medicine in St. Louis | | | Prion protein fibrils 1 | Active | Photograph | | Recombinant proteins such as the prion protein shown here are often used to model how proteins misfold and sometimes polymerize in neurodegenerative disorders. This prion protein was expressed in E. coli, purified and fibrillized at pH 7. Image taken in 2004 for a research project by Roger Moore, Ph.D., at Rocky Mountain Laboratories that was published in 2007 in <i>Biochemistry</i>. This image was not used in the publication. | | NIAID/ Rocky Mountain Laboratories | 1,023 | 590,293 | 1,024 | This image is also available in black & white, blue/green, yellow/purple, and a blue fade. Contact Ken Pekoc for any of those. Permission below: From: Marquardt, Julie (NIH/NIAID) [E] Hi Emily and Ken, Well, despite the Corbis (and other) scenarios, we can?t live in fear :0 So, I will have these added to Flickr and Emily yes, you can add this to the NIGMS library?just please credit NIAID/RML. Thanks! From: Pekoc, Ken (NIH/NIAID) [E] Hi Julie ? wanted you to be aware that I?ve shared the attached new images with the folks copied here from NIGMS for an article in one of their publications. Abbreviated email string below. Feel free to add these to our image library. Will leave it up to you whether we should put these on Flickr given our recent situation with Corbis; note that NIGMS also has internal and public image portals ? can you provide them with guidance on where these should be placed? Might also be good to keep them apprised of anything we learn from the Corbis situation. I can step out of the conversation from here ? thanks all. | | disease, Creutzfeldt-Jakob, CJD | | 245 | 57,367 | 246 | | 511 | 110,970 | 512 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness | | 5/24/2013 | | Ken Pekoc (public affairs officer) and Julie Marquardt, NIAID/ Rocky Mountain Laboratories | | | Cancer Cells Glowing from Luciferin | Active | Photograph | | The activator cancer cell culture, right, contains a chemical that causes the cells to emit light when in the presence of immune cells. | | Mark Sellmyer, Stanford University School of Medicine | 234 | 141,820 | 459 | Hi Joe, Sure - happy to try to help. 2 files are attached. One is the figure you request in AI format. I also saved it in PDF format in case you don't have easy access to Adobe Illustrator. We are happy to grant NIGMS permission to use the images. Mark Sellmyer should be credited if any credit it due. I have not edits to suggest to your summary. Let me know if you would like anything else. Thanks, Tom | Thomas Wandless | bioluminescence, photosensitizing agent | | 56 | 22,918 | 109 | | 117 | 31,515 | 230 | Cells, Chemistry, Biochemistry, and Pharmacology | | 6/14/2013 | | Mark Sellmyer, Stanford University School of Medicine | | | Computer algorithm | Active | Illustration | | This computer algorithm plots all feasible small carbon-based molecules as though they were cities on a map and identifies huge, unexplored spaces that may help fuel research into new drug therapies. Featured in the May 16, 2013 issue of <em><a href=" https://biobeat.nigms.nih.gov/">Biomedical Beat</a></em>. | | Aaron Virshup, Julia Contreras-Garcia, Peter Wipf, Weitao Yang and David Beratan, University of Pittsburgh Center for Chemical Methodologies and Library Development | 2,672 | 2,315,206 | 3,300 | From: Peter Wipf [ mailto:pwipf@pitt.edu] Sent: Thursday, May 09, 2013 5:37 PM To: Piergrossi, Joe (NIH/NIGMS) [C] Subject: Re: We'd like to feature your work in an NIH research news digest Dear Joe: thank you for your message and your interest in our work. I suggest the following revisions: Chemists Find a Universe of Unexplored Small Molecules Aaron Virshup, Julia Contreras-Garcia, Peter Wipf, Weitao Yang and David Beratan ? University of Pittsburgh Center for Chemical Methodologies and Library Development There are more unique carbon-based molecules ? the bases for most pharmaceuticals ? than there are stars in the observable universe. With such a huge number of possible molecules, it?s difficult for chemists to figure out how to select the best candidates for a new function or process in the lab. Researchers have developed a computer algorithm that may help. It plots all feasible small carbon-based molecules as though they were cities on a map and identifies huge, unexplored spaces, helping fuel future discoveries such as the creation of novel drugs and medical materials. I realize that it might be customary for your newsletter to only list the PI of the grant, however, I feel strongly that the entire team needs to be acknowledged. Progress in modern research depends on scientists with different background working together, and this is only possible if everybody also shares in the recognition. Please let me know if you have any questions regarding my suggested modifications. Also, I am attaching a high-resolution picture as you requested for the graphic. with best regards, Peter | | chart | | 641 | 157,529 | 791 | | 1,336 | 393,648 | 1,650 | Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | 5/20/2013 | | Aaron Virshup, Julia Contreras-Garcia, Peter Wipf, Weitao Yang and David Beratan, University of Pittsburgh Center for Chemical Methodologies and Library Development | | | Bacillus anthracis being killed | Active | Photograph | | <i>Bacillus anthracis</i> (anthrax) cells being killed by a fluorescent trans-translation inhibitor, which disrupts bacterial protein synthesis. The inhibitor is naturally fluorescent and looks blue when it is excited by ultraviolet light in the microscope. This is a black-and-white version of <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3525">Image 3525</a>. | | John Alumasa, Keiler Laboratory, Pennsylvania State University | 479 | 72,839 | 640 | Dear Joe, I think the summary is fine. I'm not sure how high resolution you need, but let me know if the attached file is not good enough. You have my permission to post it in your gallery - please credit John Alumasa from the Keiler lab. Best, Ken Kenneth Keiler Associate Professor of Biochemistry and Molecular Biology The Pennsylvania State University 401 Althouse Laboratory tel. (814) 863-0787 University Park, PA 16802 fax (814) 863-7024 | Kenneth Keiler | spores | | 115 | 2,336 | 153 | | 239 | 4,718 | 320 | Cells, Chemistry, Biochemistry, and Pharmacology | | 6/14/2013 | | John Alumasa, Keiler Laboratory, Pennsylvania State University | | | Telomeres on outer edge of nucleus during cell division | Active | Photograph | | New research shows telomeres moving to the outer edge of the nucleus after cell division, suggesting these caps that protect chromosomes also may play a role in organizing DNA. | | Laure Crabbe, Jamie Kasuboski and James Fitzpatrick, Salk Institute for Biological Studies | 1,533 | 143,657 | 1,594 | Dear Joe, I'd be happy to grant permission. I assume that since Cell Reports allows authors to retain the right to images, this would not be an issue. I am attaching the figure in question here as illustrator file, please let me know if the resolution is appropriate. thank you, best regards, jan On Jul 1, 2013, at 2:34 PM, "Piergrossi, Joe (NIH/NIGMS) [C]" < joe.piergrossi@nih.gov> wrote: Dr. Karlseder, Back in January we featured some of your work with James Fitzpatrick, Laure Crabbe and Jamie Kasuboski in our series Research in Action. We would like to use the image associated with that article in our image gallery, but we first need your permission. Granting permission means the image will be available to the public for educational, media and other uses, in addition to use by NIGMS/NIH. If you do grant permission, could you please send a high-resolution version of the image? Dr. Fitzpatrick directed me to you for permission. Thanks! Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | Jan Karlseder | chromosome, mitosis | | 382 | 9,405 | 398 | | 766 | 33,332 | 796 | Cells, Genes | | 7/2/2013 | | Laure Crabbe, Jamie Kasuboski and James Fitzpatrick, Salk Institute for Biological Studies | | | Ion channel | Active | Illustration | | A special "messy" region of a potassium ion channel is important in its function. | | Yu Zhoi, Christopher Lingle Laboratory, Washington University School of Medicine in St. Louis | 2,000 | 1,229,786 | 3,000 | Hi Joe, Here's the high-resolution (3000x2000) image you required. Please let us know if there is anything else we could help. Yu ________________________________________ From: Lingle, Christopher Sent: Friday, June 21, 2013 1:50 PM To: Zhou, Yu Subject: RE: Permission to add image to an NIH gallery Feel free to respond to Joe, along with a high-resolution image. From: Piergrossi, Joe (NIH/NIGMS) [C] [ mailto:joe.piergrossi@nih.gov] Sent: Friday, June 21, 2013 1:17 PM To: Lingle, Christopher; zhouy@wustl.edu Subject: Permission to add image to an NIH gallery Dear Drs. Lingle and Zhou, Last year we featured some of your work< http://www.livescience.com/21199-disordered-ion-channel-nsf-ria.html> in our series Research in Action. We would like to add the image associated with that article to our public image repository. Would you allow us to move the image there? We will properly credit the image as it is on the Research in Action page. Adding the image to the gallery would grant the public access to the image for educational, media and other uses, in addition to use by NIGMS/NIH. If you do grant us this permission, please send us a high-resolution version of the image. Thank you very much! Best regards, Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov< mailto:joe.piergrossi@nih.gov> 45 Center Drive, Bethesda, MD 20892 ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. | | chemical element, k+ channel, Kv channel | | 500 | 56,092 | 750 | | 1,000 | 259,005 | 1,500 | Molecular Structures | | 7/2/2013 | | Yu Zhoi, Christopher Lingle Laboratory, Washington University School of Medicine in St. Louis | | | Chang Shan | Active | Illustration | | For thousands of years, Chinese herbalists have treated malaria using Chang Shan, a root extract from a type of hydrangea that grows in Tibet and Nepal. Recent studies have suggested Chang Shan can also reduce scar formation, treat multiple sclerosis and even slow cancer progression. | | Paul Schimmel Lab, Scripps Research Institute | 495 | 265,780 | 700 | That should be fine Joe-- From: <Piergrossi>, "Joe [C] (NIH/NIGMS)" < joe.piergrossi@nih.gov> Date: Friday, June 21, 2013 9:13 AM To: Paul Schimmel < schimmel@scripps.edu> Subject: Permission to use image for an NIH image gallery Dear Dr. Schimmel, This past March, we featured research from your lab on Chang Shan in our series Research in Action. We would like to know if we can use the image we featured in the article in our image gallery. If you grant permission, the image will be available for public use in education and in media, as well as use by NIGMS/NIH. Please send me a high-resolution version of the image if you do allow permission. Thanks! Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | | 3d, Dichroa Febrifuga, leaf, leaves | | 118 | 33,981 | 167 | | 247 | 52,855 | 350 | Chemistry, Biochemistry, and Pharmacology, Injury and Illness, Molecular Structures | | 7/2/2013 | | Paul Schimmel Lab, Scripps Research Institute | | | Shiga toxin being sorted inside a cell | Active | Photograph | | Shiga toxin (green) is sorted from the endosome into membrane tubules (red), which then pinch off and move to the Golgi apparatus. | | Somshuvra Mukhopadhyay, The University of Texas at Austin, and Adam D. Linstedt, Carnegie Mellon University | 381 | 21,776 | 750 | Joe, The image is attached at 300 dpi. Credit for the image should be: Somshuvra Mukhopadhyay, The University of Texas at Austin, and Adam D. Linstedt, Carnegie Mellon University. Adam was the corresponding author on our Science paper, and should be cited along with me for the image. Best regards, Som. Somshuvra Mukhopadhyay M.B.B.S.;PhD Assistant Professor The University of Texas at Austin Division of Pharmacology & Toxicology, and Institute for Cellular & Molecular Biology 3.510 F BME 107 W. Dean Keeton Stop C0875 Austin TX 78712 512-232-8200 (office) 512-471-5873 (lab) URL: www.utaustingolgilab.com ________________________________________ From: Piergrossi, Joe (NIH/NIGMS) [C] [joe.piergrossi@nih.gov] Sent: Friday, June 21, 2013 1:32 PM To: Mukhopadhyay, Somshuvra Subject: Permission to add image to an NIH gallery Dear Dr. Mukhopadhyay, Last year we featured some of your work in our series Research in Action. We would like to add the image associated with this article to our public online repository. Would you allow us to do so? We will credit you on this picture (let us know if you?d prefer Carnegie Mellon or UTexas affiliation). Adding this image to the gallery would allow its use by the public for media and educational purposes, in addition to use by NIGMS/NIH. If you do grant permission, please send a high-resolution version of the image. Thanks, Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | | bacterial toxin | | 95 | 2,004 | 187 | | 190 | 5,603 | 374 | Cells, Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 7/2/2013 | | Somshuvra Mukhopadhyay, The University of Texas at Austin, and Adam D. Linstedt, Carnegie Mellon University | | | Worm sperm | Active | Photograph | | To develop a system for studying cell motility in unnatrual conditions -- a microscope slide instead of the body -- Tom Roberts and Katsuya Shimabukuro at Florida State University disassembled and reconstituted the motility parts used by worm sperm cells. | | Tom Roberts, Florida State University | 632 | 36,157 | 400 | Joe, Of course you can use the image and I am happy to give my permission. Tom Roberts Sent from my iPad On Jun 21, 2013, at 2:48 PM, "Piergrossi, Joe (NIH/NIGMS) [C]" < joe.piergrossi@nih.gov> wrote: Dear Dr. Roberts, In 2011 we featured some of your work in our series Research in Action. We would like to add the image associated with that article to our public online repository. Would you allow us to do so? We will maintain the same credit to you on the picture. Adding the picture to this gallery will allow its use by the public for educational, media and other uses, in addition to use by NIGMS/NIH. Thank you very much! Best regards, Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | | Cell movement, swimming, crawling, gliding, swarming | | 151 | 3,313 | 95 | | 316 | 10,761 | 200 | Cells, Molecular Structures | | 7/2/2013 | | Tom Roberts, Florida State University | | | Apoptosis reversed | Active | Photograph | | Two healthy cells (bottom, left) enter into apoptosis (bottom, center) but spring back to life after a fatal toxin is removed (bottom, right; top). | | Hogan Tang of the Denise Montell Lab, Johns Hopkins University School of Medicine | 791 | 333,518 | 1,000 | You have my permission. Please send me the link when it is up. Perhaps I will feature your link on my website :) -------------------------------------------------------- Denise Montell Duggan Professor Molecular, Cellular and Developmental Biology University of California Santa Barbara, CA denise.montell@lifesci.ucsb.edu 443-570-4704 On Jun 21, 2013, at 10:55 AM, Piergrossi, Joe (NIH/NIGMS) [C] wrote: Dear Dr. Montell, Last October we featured some of your research in our series Research in Action. We would like to add the image associated with that article to our public image gallery. Would you grant permission for us to do so? Adding the image to the gallery would make it accessible to the public for educational, media and other uses, in addition to use by NIGMS/NIH. Thank you very much! Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | Denise Montell | programmed cell death | | 244 | 70,291 | 308 | | 395 | 17,197 | 500 | Cells, Genes, Injury and Illness | | 7/2/2013 | | Hogan Tang of the Denise Montell Lab, Johns Hopkins University School of Medicine | | | Brains of sleep-deprived and well-rested fruit flies | Active | Photograph | | On top, the brain of a sleep-deprived fly glows orange because of Bruchpilot, a communication protein between brain cells. These bright orange brain areas are associated with learning. On the bottom, a well-rested fly shows lower levels of Bruchpilot, which might make the fly ready to learn after a good night's rest. | | Chiara Cirelli, University of Wisconsin-Madison | 486 | 191,299 | 500 | yes, with pleasure best regards chiara cirelli On Fri, Jun 21, 2013 at 1:56 PM, Piergrossi, Joe (NIH/NIGMS) [C] < joe.piergrossi@nih.gov> wrote: Dear Dr. Cirelli, In 2011 we featured some of your work in our series Research in Action. We would like to add the image associated with that article to our public online repository. Would you allow us to do so? We will continue to credit the image to you. Adding the image to this gallery will allow the public to use it for educational, media and other purposes, in addition to use by NIGMS/NIH. Thank you very much! Best regards, Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | | Drosophila melanogaster, structure | | 299 | 207,122 | 308 | | 243 | 61,947 | 250 | Cells, Molecular Structures | | 7/2/2013 | | Chiara Cirelli, University of Wisconsin-Madison | | | Kinesin moves cellular cargo | Active | Illustration | | A protein called kinesin (blue) is in charge of moving cargo around inside cells and helping them divide. It's powered by biological fuel called ATP (bright yellow) as it scoots along tube-like cellular tracks called microtubules (gray). | | Charles Sindelar, Yale University | 624 | 125,152 | 624 | Dear Joe, no problem at all! My current affiliation is as below (Yale MB&B assistant professor)- I assume that is what makes sense? - Chuck On Jun 21, 2013, at 3:05 PM, Piergrossi, Joe (NIH/NIGMS) [C] wrote: Dear Dr. Sindelar, In 2011 we featured some of your work in our series Research in Action. We would like to add the image associated with that article to our public online repository. Would you allow us to do so, and would you please let us know how you would like to be affiliated in the credit? Adding this image to this gallery would allow the public to use it for educational, media and other uses, in addition to use by NIGMS/NIH. Thank you very much! Best regards, Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 -- Charles V. Sindelar, Ph.D. Dept. of Molecular Biophysics and Biochemistry Yale University SHMC-E25 333 Cedar Street New Haven, CT 06520-8024 Phone (203) 737-4752 Lab (203) 737-4723 Fax (203) 785-7979 http://medicine.yale.edu/mbb/faculty/charles_sindelar.profile | | 3d, structure | | 149 | 6,297 | 149 | | 312 | 19,725 | 312 | Cells, Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 7/2/2013 | | Charles Sindelar, Yale University | | | How cilia do the wave | Active | Video | | Thin, hair-like biological structures called cilia are tiny but mighty. Each one, made up of more than 600 different proteins, works together with hundreds of others in a tightly-packed layer to move like a crowd at a ball game doing "the wave." Their synchronized motion helps sweep mucus from the lungs and usher eggs from the ovaries into the uterus. By controlling how fluid flows around an embryo, cilia also help ensure that organs like the heart develop on the correct side of your body. | | Zvonimir Dogic, Brandeis University | | 387,277 | | Dear Joe, The leading author, Zvonimir Dogic, has given his permission that you can add this video (which was recorded in the Dogic laboratory) to your online public repository. If you need a file or similar, you can also contact him directly (he is cc-ed to this email). Thank you very much for your interest. Best wishes, Daniela | | black and white, cellular movement, rhythmic waving, beating motion, sperm | | | | | | | | | Cells | | 7/26/2013 | | Zvonimir Dogic, Brandeis University | | | Repairing DNA | Active | Illustration | | Like a watch wrapped around a wrist, a special enzyme encircles the double helix to repair a broken strand of DNA. Without molecules that can mend such breaks, cells can malfunction, die, or become cancerous. Related to image <a href="/Pages/DetailPage.aspx?imageID2=2330">2330</a>. | | Courtesy of Tom Ellenberger, Washington University School of Medicine in St. Louis, and Dave Gohara, Saint Louis University School of Medicine | 2,220 | 352,016 | 1,729 | Image 2330 is the same image with different colors. | Tom Ellenberger | structure, proteins | | 554 | 20,229 | 432 | | 1,109 | 77,428 | 864 | Genes, Molecular Structures | | | Featured as the GDB image in the 2012 version of the NIGMS mini-brochure: Investing in Discovery: An Overview of the National Institute of General Medical Sciences | Tom Ellenberger, Washington University School of Medicine | | | Wound healing in process | Active | Photograph | | | | The photo was taken by Yaron Fuchs and Samara Brown. Fuchs is a postdoctoral fellow in Hermann Steller's lab and Brown is the lab's Research Technician III. | 953 | 516,651 | 1,018 | | Hermann Steller, Rockefeller University; GDB | structure | | 228 | 11,155 | 243 | | 476 | 35,447 | 509 | Cells, Injury and Illness | | | | Hermann Steller, Rockefeller University | | | Wound healing in process | Active | Photograph | | | | The photo was taken by Yaron Fuchs and Samara Brown. Fuchs is a postdoctoral fellow in Hermann Steller's lab and Brown is the lab's Research Technician III. | 899 | 224,775 | 921 | | Hermann Steller, Rockefeller University; GDB | structure | | 215 | 44,405 | 221 | | 449 | 82,482 | 460 | Cells, Injury and Illness | | | | Hermann Steller, Rockefeller University | | | Neuron with labeled synapses | Active | Photograph | | In this image, recombinant probes known as FingRs (Fibronectin Intrabodies Generated by mRNA display) were expressed in a cortical neuron, where they attached fluorescent proteins to either PSD95 (green) or Gephyrin (red). PSD-95 is a marker for synaptic strength at excitatory postsynaptic sites, and Gephyrin plays a similar role at inhibitory postsynaptic sites. Thus, using FingRs it is possible to obtain a map of synaptic connections onto a particular neuron in a living cell in real time.
| | Jason Junge, University of Southern California. | 512 | 172,881 | 512 | Hi Sharon, Here are the images and the captions. Hope this is ok. don -----Original Message----- From: Sharon (NIH/NIGMS) [C] Reynolds [ mailto:sharon.reynolds@nih.gov] Sent: Monday, July 29, 2013 5:58 AM To: Donald Arnold Subject: RE: your neuron images--may we include some in our gallery? Thank you! Sharon Sharon Reynolds, ELS Freelance Writer/Editor (Contractor) National Institute on Deafness and Other Communication Disorders National Institute of General Medical Sciences Phone: 410-271-8297 ________________________________ From: Donald Arnold [darnold@dornsife.usc.edu] Sent: Sunday, July 28, 2013 2:54 PM To: Reynolds, Sharon (NIH/NIGMS) [C] Subject: Re: your neuron images--may we include some in our gallery? Hi Sharon, I have some other images that I can send you. I am currently out of the country and will be back aug. 5. I'll contact you then Don Sent from my iPhone On Jul 28, 2013, at 5:23 PM, "Reynolds, Sharon (NIH/NIGMS) [C]" < sharon.reynolds@nih.gov< mailto:sharon.reynolds@nih.gov>> wrote: Dear Dr. Arnold, In tracking NIGMS-funded published research, I came across the fantastic image from your June 19 Neuron paper that was posted on the NIH Director's Blog ( http://directorsblog.nih.gov/2013/07/25/watching-neuron-attachments-in-real-time/). Do you have any similar high-resolution images that were not published (and thus are free of copyright restrictions) that we could put into the NIGMS public domain image and video gallery< http://images.nigms.nih.gov/index.cfm>? If you do have any to share, please let me know, and I can let you know a bit more about the resolution we need and other details (captions, etc.). Best regards, Sharon Sharon Reynolds, ELS Freelance Writer/Editor (Contractor) National Institute on Deafness and Other Communication Disorders National Institute of General Medical Sciences Phone: 410-271-8297 | | structure | | 308 | 116,556 | 308 | | 256 | 41,291 | 256 | Cells | | 8/25/2013 | | Don Arnold and Richard Roberts, University of Southern California. | | | Wound healing in process | Active | Photograph | | | | The photo was taken by Yaron Fuchs and Samara Brown. Fuchs is a postdoctoral fellow in Hermann Steller's lab and Brown is the lab's Research Technician III. | 540 | 60,504 | 540 | | Hermann Steller, Rockefeller University; GDB | structure | | 135 | 3,178 | 135 | | 270 | 12,022 | 270 | Cells, Injury and Illness | | | | Hermann Steller, Rockefeller University | | | Growing hair follicle stem cells | Active | Photograph | | Wound healing requires the action of stem cells. In mice that lack the Sept2/ARTS gene, stem cells involved in wound healing live longer and wounds heal faster and more thoroughly than in normal mice. This confocal microscopy image from a mouse lacking the Sept2/ARTS gene shows a tail wound in the process of healing. Cell nuclei are in blue. Red and orange mark hair follicle stem cells (hair follicle stem cells activate to cause hair regrowth, which indicates healing). See more information in the article in <a href=" http://www.sciencemag.org/content/341/6143/286.abstract">Science</a>. | | Yaron Fuchs, Samara Brown, and Hermann Steller, Rockefeller University | 953 | 122,875 | 1,018 | 2013: The photo was taken by Yaron Fuchs and Samara Brown. Fuchs is a postdoctoral fellow in Hermann Steller's lab and Brown is the lab's Research Technician III. | Hermann Steller, Rockefeller University; GDB | structure | | 237 | 5,024 | 254 | | 476 | 22,613 | 508 | Cells, Injury and Illness | | 8/25/2013 | 2014 NIGMS minibrochure | Hermann Steller, Rockefeller University | | | HeLa cells | Active | Photograph | | | | National Center for Microscopy and Imaging Research | 2,409 | 1,640,846 | 3,200 | | | 3D, structure | | 578 | 121,576 | 767 | | 1,204 | 423,113 | 1,600 | Cells, Tools and Techniques | | | | National Center for Microscopy and Imaging Research | | | HeLa cells | Active | Photograph | | | | National Center for Microscopy and Imaging Research | 2,424 | 2,017,000 | 3,200 | | | 3D, structure | | 581 | 172,549 | 767 | | 1,212 | 538,171 | 1,600 | Cells, Tools and Techniques | | | | National Center for Microscopy and Imaging Research | | | HeLa cells | Active | Photograph | | | | National Center for Microscopy and Imaging Research | 2,409 | 5,178,369 | 3,200 | | | 3D, structure | | 578 | 240,385 | 767 | | 1,204 | 1,126,873 | 1,600 | Cells, Tools and Techniques | | | | National Center for Microscopy and Imaging Research (NCMIR) | | | Glowing bacteria make a pretty postcard | Active | Photograph | | This tropical scene, reminiscent of a postcard from Key West, is actually a petri dish containing an artistic arrangement of genetically engineered bacteria. The image showcases eight of the fluorescent proteins created in the laboratory of the late Roger Y. Tsien, a cell biologist at the University of California, San Diego. Tsien, along with Osamu Shimomura of the Marine Biology Laboratory and Martin Chalfie of Columbia University, share the 2008 Nobel Prize in chemistry for their work on green fluorescent protein-a naturally glowing molecule from jellyfish that has become a powerful tool for studying molecules inside living cells. | | Nathan C. Shaner, The Scintillon Institute | 800 | 177,932 | 800 | Hi Joe, You have my permission to place the image in the repository. Please credit Nathan C. Shaner, The Scintillon Institute. Thanks, Nathan ________________________ Nathan C. Shaner, Ph.D. Assistant Professor The Scintillon Institute 6404 Nancy Ridge Dr. San Diego, CA 92121 tel. 858-587-6645 fax. 858-587-6692 nathanshaner@scintillon.org On Jun 21, 2013, at 12:35 PM, joe.piergrossi@nih.gov wrote: Form details below. First Name: Joe Last Name: Piergrossi Email: joe.piergrossi@nih.gov Telephone: Message: Dear Dr. Shaner, In 2011 we featured some of your work in our series Research in Action. We would like to add the image associated with that article in our public online repository. Would you allow us to do so? Please let us know how you would like to be credited. Adding the image to this gallery would allow the public to use it for educational, media and other purposes, in addition to NIGMS/NIH use. Thank you very much, Joe Joe Piergrossi [C], Science Writing Intern National Institute of General Medical Sciences Phone: 301-496-7301 Email: joe.piergrossi@nih.gov 45 Center Drive, Bethesda, MD 20892 | Roger Tsien | art | | 191 | 52,462 | 191 | | 400 | 104,665 | 400 | Cells, Genes | | | | Nathan C. Shaner, The Scintillon Institute | | | HeLa cells | Active | Photograph | | | | National Center for Microscopy and Imaging Research | 2,400 | 2,895,949 | 3,200 | | | 3D, structure | | 575 | 136,462 | 767 | | 1,200 | 531,520 | 1,600 | Cells, Tools and Techniques | | | | National Center for Microscopy and Imaging Research (NCMIR) | | | Lorsch Swearing In | Active | Photograph | | Jon Lorsch at his swearing in as NIGMS director in August 2013. Also shown are Francis Collins, NIH Director, and Judith Greenberg, former NIGMS Acting Director. | | NIGMS | 3,744 | 3,519,420 | 5,616 | | | doctors, scientist | | 898 | 137,054 | 1,347 | | 1,872 | 442,970 | 2,808 | Being a Scientist | | 8/6/2013 | | | | | 800 MHz NMR magnet | Active | Photograph | | Scientists use nuclear magnetic spectroscopy (NMR) to determine the detailed, 3D structures of molecules. | | Courtesy of the Bio-NMR Core facility at the University of Kansas | 3,072 | 5,932,920 | 4,608 | Dr. Anbanandam had the image taken (that's him in the photo) for the Sept 2013 issue of Findings (article on Emily Scott, who uses this magnet in her research). From: Anbanandam, Asokan [ mailto:asokan@ku.edu] Sent: Sunday, July 14, 2013 5:12 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: seeking high-res photo of NMR magnet Hi Alisa, Hope you had a great week end. Here is the new high resolution image of our 800 MHz magnet. Please let me know, if this is acceptable for publication. With respect to credit, it should read " Courtesy of Bio-NMR Core facility at University of Kansas". If you need anything more, please do not hesitate to contact me. Thanks Asokan Dr. A. Asokan, Ph.D. Director, Bio-NMR (CORE FACILITY) Del Shankel Structural Biology Center 2034 Becker Dr. #1011 The University of Kansas Lawrence, KS 66047 785-864-3746 (O) 785-864-8141 (F) http://psf.cobre.ku.edu/BioNMRLab.htm | Asokan Anbanandam, University of Kansas; NCRR (not active) | device | | 737 | 172,676 | 1,105 | | 1,536 | 542,783 | 2,304 | Molecular Structures, Tools and Techniques | | 9/8/2013 | | Asokan Anbanandam, University of Kansas | | | Bacillus anthracis being killed | Active | Photograph | | <em>Bacillus anthracis</em> (anthrax) cells being killed by a fluorescent <em>trans</em>-translation inhibitor, which disrupts bacterial protein synthesis. The inhibitor is naturally fluorescent and looks blue when it is excited by ultraviolet light in the microscope. This is a color version of <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3481">Image 3481</a>. | | Keiler lab, Penn State University | 2,452 | 1,008,024 | 2,385 | On 5/23/13 12:58 PM, Barbara K. Kennedy wrote: Yes, certainly, Alisa. The micrographs were produced in Dr. Keiler's lab, so there is no problem with your including them in the NIGMS Image and Video Gallery after the embargo lifts. Best wishes, Barbara At 4:48 PM +0000 23/5/13, Machalek, Alisa Zapp (NIH/NIGMS) [E] wrote: Thanks, Barbara. I'll get back to you shortly with a quote. Also, if the image is free of copyright restrictions, would we be able to include it in the NIGMS Image and Video Gallery after the embargo lifts? Best, Alisa https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5610534/ | Kenneth Keiler, Penn State University; GDB | spores | | 588 | 36,503 | 571 | | 1,226 | 84,302 | 1,192 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | 9/8/2013 | | Kenneth Keiler, Penn State University | | | HeLa cells | Active | Photograph | | | | National Center for Microscopy and Imaging Research | 1,999 | 2,250,519 | 2,400 | | | 3D, structure | | 479 | 102,448 | 575 | | 999 | 393,243 | 1,200 | Cells, Tools and Techniques | | | | National Center for Microscopy and Imaging Research (NCMIR) | | | Bacteria in the mouse colon | Active | Photograph | | Image of the colon of a mouse mono-colonized with <i>Bacteroides fragilis</i> (red) residing within the crypt channel. The red staining is due to an antibody to <i>B. fragilis</i>, the green staining is a general dye for the mouse cells (phalloidin, which stains F-actin) and the light blue glow is from a dye for visualizing the mouse cell nuclei (DAPI, which stains DNA). Bacteria from the human microbiome have evolved specific molecules to physically associate with host tissue, conferring resilience and stability during life-long colonization of the gut. Image is featured in October 2015 Biomedical Beat blog post <a href=" http://biobeat.nigms.nih.gov/2015/10/cool-images-a-halloween-inspired-cell-collection/" target="_">Cool Images: A Halloween-Inspired Cell Collection</a>. | | Zbigniew Mikulski and Klaus Ley | 2,628 | 3,970,727 | 2,480 | Updated October 19, 2015; asked Dr. Mazmanian to elaborate on the other stained structures shown, and he provided these additional details: Hi Martin, Hope all is well, and thank you for your message. The red staining is for bacteria (an antibody to Bacteroides fragilis), the green staining is a general dye for cells (phalloidin, which stains F-actin), and the blue is a dye for nuclei (DAPI, which stains DNA). Please let me know if you need more info, and sorry for the late reply as I am traveling. Best wishes, Sarkis -----Original Message----- From: Sarkis Mazmanian [ mailto:sarkis@caltech.edu] Sent: Saturday, August 17, 2013 7:30 PM To: Sledjeski, Darren (NIH/NIGMS) [E] Subject: Re: update on our funded research Hi Darren, Hope all is well. I have attached a high res image you can forward to your PR people. The image is not published anywhere and was captured by us. The caption can read, "Image of the colon of mice mono-colonized with Bacteroides fragilis (red) residing within the crypt channel. Bacteria from the human microbiome have evolved specific molecules to physically associate with host tissue, conferring resilience and stability during life-long colonization of the gut". Credit should go to: Zbigniew Mikulski and Klaus Ley. Let me know if you have any questions. Thanks, Sarkis Sarkis K Mazmanian Professor Division of Biology & Biological Engineering California Institute of Technology 1200 E California Bl. Mailcode: 156-29 Pasadena, CA 91125 Ph: 626-395-2356 http://biology.caltech.edu/Members/Mazmanian | Sarkis K. Mazmanian, California Institute of Technology; GDB | animal | | 630 | 63,438 | 594 | | 1,314 | 211,940 | 1,240 | Cells | | 9/8/2013 | | Sarkis K. Mazmanian, California Institute of Technology | | | Structure of heme, top view | Active | Illustration | | | | Rachel Kramer Green, RCSB Protein Data Bank | 1,564 | 371,795 | 1,561 | Hi Sharon, The two heme structures can be made public. The two istock photos should be OCPL unlimited (admin only). Let me know if you need help with annotation, etc. And, as always, please check whether these are in the gallery before you upload them (again). Trying to get my Inbox down to a size that will let me send/receive email! Alisa | | 3D | | 375 | 44,758 | 374 | | 782 | 93,032 | 781 | Molecular Structures | | 11/15/2013 | Findings September 2013 | Rachel Kramer Green, RCSB Protein Data Bank | | | Structure of heme, side view | Active | Illustration | | | | Rachel Kramer Green, RCSB Protein Data Bank | 1,564 | 324,485 | 1,561 | Hi Sharon, The two heme structures can be made public. The two istock photos should be OCPL unlimited (admin only). Let me know if you need help with annotation, etc. And, as always, please check whether these are in the gallery before you upload them (again). Trying to get my Inbox down to a size that will let me send/receive email! Alisa | | 3D | | 375 | 38,304 | 374 | | 782 | 82,222 | 781 | Molecular Structures | | 11/15/2013 | Findings September 2013 | Rachel Kramer Green, RCSB Protein Data Bank | | | Master clock of the mouse brain | Active | Photograph | | An image of the area of the mouse brain that serves as the 'master clock,' which houses the brain's time-keeping neurons. The nuclei of the clock cells are shown in blue. A small molecule called VIP, shown in green, enables neurons in the central clock in the mammalian brain to synchronize. | | Cristina Mazuski in the lab of Erik Herzog, Washington University in St. Louis | 1,040 | 352,117 | 1,392 | From: Carlson, Emily (NIH/NIGMS) [E] Sent: Friday, November 22, 2013 7:40 AM To: Reynolds, Sharon (NIH/NIGMS) [C] Subject: FW: Biobeat Entry The PI told Jilliene we could include the image in the image gallery. I?ll forward her note for your records. From: Drayton, Jilliene (NIH/NIGMS) [E] Sent: Thursday, November 21, 2013 8:54 AM To: Carlson, Emily (NIH/NIGMS) [E] Subject: FW: Biobeat Entry FYI. Dr. Herzog approved the post and he also sent us high-res versions of the image (attached). | Erik Herzog, Washington University in St. Louis | circadian rhythm | | 249 | 49,590 | 334 | | 520 | 99,967 | 696 | Cells, Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 11/22/2013 | Biomedical Beat, November 2013 | Erik Herzog, Washington University in St. Louis | | | Insulin and protein interact in pancreatic beta cells | Active | Photograph | | A large number of proteins interact with the hormone insulin as it is produced in and secreted from the beta cells of the pancreas. In this image, the interactions of TMEM24 protein (green) and insulin (red) in pancreatic beta cells are shown in yellow. More information about the research behind this image can be found in a <a href=" http://biobeat.nigms.nih.gov/2013/11/mapping-approach-yields-insulin-secretion-pathway-insights/">Biomedical Beat Blog</a> posting from November 2013. | | Image courtesy of the Balch lab, The Scripps Research Institute | 431 | 339,740 | 469 | Should have said 'as you DEEM necessary'- good'ole auto spell! Bill Begin forwarded message: From: "William E. Balch" < webalch@scripps.edu> Subject: Re: New Map of Insulin Pathway Could Lead to Better Diabetes Drugs Date: November 20, 2013 2:35:52 PM PST To: "Reynolds, Sharon (NIH/NIGMS) [C]" < sharon.reynolds@nih.gov> Hi Sharon, Ok to tweak sentence. Image is yours- feel free to use a deep necessary. Bill | William E. Balch, The Scripps Research Institute | imaging | | 283 | 89,930 | 308 | | 215 | 151,274 | 234 | Cells, Molecular Structures, Tools and Techniques | | 11/22/2013 | Biomedical Beat Blog, November 22, 2013 | William E. Balch, The Scripps Research Institute | | | Structure of amyloid-forming prion protein | Active | Illustration | | | | Douglas Fowler, University of Washington | 871 | 255,853 | 732 | -----Original Message----- From: Douglas M. Fowler [ mailto:dfowler@uw.edu] Sent: Tuesday, November 05, 2013 2:10 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: Permission for NIGMS to Use Image Hi Emily, I'm glad I wasn't too late. You may use the image however you like, as long as it is consistent with PLOS Biology's policies. Best, Doug Douglas M. Fowler, Ph. D. Assistant Professor Department of Genome Sciences University of Washington On Tue, Nov 5, 2013 at 10:31 AM, Carlson, Emily (NIH/NIGMS) [E] < carlsone@nigms.nih.gov> wrote: > Thanks, Doug. With online publishing, info never comes too late! Do you also grant us permission to put it into the public domain by including it in our gallery at http://images.nigms.nih.gov/? In addition to being available to others for educational, news media, or research purposes, NIGMS and other NIH components use images and videos in this gallery for a variety of products (booklets, flyers, Web pages, posters, exhibits, videos, blog posts, etc.). > > Here's the drafted caption (for 1c): This structure from an amyloid-forming prion protein shows one way beta sheets can stack. Credit: Douglas Fowler, University of Washington. > > The article is posted at > http://publications.nigms.nih.gov/insidelifescience/protein-folding-go > ne-wrong.html > > Emily | Douglas Fowler, Ph.D., University of Washington | 3D | | 366 | 164,090 | 308 | | 435 | 76,039 | 366 | Molecular Structures, Tools and Techniques | | 11/18/2013 | | Douglas Fowler, University of Washington | | | Cell in two stages of division | Active | Photograph | | This image shows a cell in two stages of division: prometaphase (top) and metaphase (bottom). To form identical daughter cells, chromosome pairs (blue) separate via the attachment of microtubules made up of tubulin proteins (pink) to specialized structures on centromeres (green). | | Lilian Kabeche, Ph.D., Dartmouth | 1,055 | 863,324 | 1,019 | Here?s the email granting image use permission, if you need it. From: Lily Kabeche [ mailto:lilian.c.kabeche@gmail.com] Sent: Thursday, October 24, 2013 3:47 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: NIGMS Summary of Cyclin A Finding That sounds perfect! And yup absolutely, you have permission!! Thanks a bunch!! Lily On Oct 24, 2013, at 1:47 PM, Carlson, Emily (NIH/NIGMS) [E] < carlsone@nigms.nih.gov> wrote: So maybe something like (feel free to make corrections/suggestions!): This image shows a cell in two stages of division: prometaphase (top) and metaphase (bottom). To form identical daughter cells, chromosome pairs (blue) separate via the attachment of microtubules made up of tubulin proteins (pink) to specialized structures on centromeres (green). Credit: Lilian Kabeche, Dartmouth. Since this image is somewhat general, would we have permission to put it into the public domain by including it in our gallery at http://images.nigms.nih.gov/? In addition to being available to others for educational, news media, or research purposes, NIGMS and other NIH components use images and videos in this gallery for a variety of products (booklets, flyers, Web pages, posters, exhibits, videos, blog posts, etc.). Emily From: Lily Kabeche [ mailto:lilian.c.kabeche@gmail.com] Sent: Thursday, October 24, 2013 1:24 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: NIGMS Summary of Cyclin A Finding Hi Emily! That's one of my favorites!!! Those are Immunofluorescence image of RPE-1 cells in prometaphase (top) and metaphase (bottom) stained for tubulin (pink), centromeres (yellow-green) and DNA (blue). I took the image :) So here is my information!! Not sure how much or little you need: Lilian Kabeche, PhD Postdoctoral Fellow Duane Compton's Laboratory 405 Remsen Hanover NH 03755 | Laboratory of Duane Compton, Dartmouth | Structure | | 319 | 89,830 | 308 | | 528 | 806,968 | 509 | Cells | | 11/15/2013 | | Lilian Kabeche, Dartmouth | | | TonB protein in gram-negative bacteria | Active | Photograph | | The green in this image highlights a protein called TonB, which is produced by many gram-negative bacteria, including those that cause typhoid fever, meningitis and dysentery. TonB lets bacteria take up iron from the host's body, which they need to survive. More information about the research behind this image can be found in a <a href=" http://biobeat.nigms.nih.gov/2013/08/cool-image-tiny-bacterial-motor/">Biomedical Beat Blog posting</a> from August 2013. | | Phillip Klebba, Kansas State University | 374 | 32,965 | 567 | | Phillip Klebba, Kansas State University | cells, | | 89 | 2,747 | 136 | | 187 | 7,813 | 284 | Cells, Injury and Illness | | 11/22/2013 | Biomedical Beat Blog, August 2013 | Phillip Klebba, Kansas State University | | | Protein clumping in zinc-deficient yeast cells | Active | Photograph | | The green spots in this image are clumps of protein inside yeast cells that are deficient in both zinc and a protein called Tsa1 that prevents clumping. Protein clumping plays a role in many diseases, including Parkinson's and Alzheimer's, where proteins clump together in the brain. Zinc deficiency within a cell can cause proteins to mis-fold and eventually clump together. Normally, in yeast, Tsa1 codes for so-called "chaperone proteins" which help proteins in stressed cells, such as those with a zinc deficiency, fold correctly. The research behind this image was published in 2013 in the Journal of Biological Chemistry. | | Colin MacDiarmid and David Eide/Journal of Biological Chemistry | 3,600 | 1,251,508 | 2,743 | > > Hi Sharon > > > > That would be great- glad you liked the picture! > > > > Dave > > > > On 12/4/13 10:57 AM, "Reynolds, Sharon (NIH/NIGMS) [C]" > > < sharon.reynolds@nih.gov> wrote: > > > > Dear Dr. Eide, > > > > Back in October, we saw your institution's press release on your > > Journal of Biological Chemistry paper > > ( http://www.news.wisc.edu/22170). Since the study had some NIGMS funding, we put a link to it on our news page: > > http://www.nigms.nih.gov/News/Results/Pages/default.aspx. The NIGMS > > Office of Communications and Public Liaison also manages an Image and > > Video Gallery: http://images.nigms.nih.gov/. The image of the yeast > > cells used in your press release really caught our eye--would you give > > us permission to put it (or a similar one without copyright > > restrictions if that one was used in the paper) in the public domain > > in the gallery? We would of course credit you and your lab. > > > > Best regards, > > Sharon | Colin MacDiarmid and David Eide, University of Wisconsin--Madiso | sickness, minerals | | 900 | 66,642 | 685 | | 1,800 | 264,489 | 1,371 | Cells, Injury and Illness | | 12/10/2013 | | Colin MacDiarmid and David Eide, University of Wisconsin--Madison | | | Bioluminescent imaging in adult zebrafish - lateral and overhead view | Active | Photograph | | | | Chen-Hui Chen, Laboratory of Kenneth Poss, Duke University | 1,906 | 425,457 | 1,687 | Wed 12/11/2013 12:53 PM Dear Sharon, Yes, attached are several that are free of restrictions. Chen-Hui, the first author of the paper, captured these images. Thank you for posting our research images! Best, Ken On Dec 11, 2013, at 11:43 AM, Reynolds, Sharon (NIH/NIGMS) [C] wrote: Dear Dr. Poss, The program director of your NIGMS R01 grant, Susan Haynes, showed the NIGMS Office of Communications and Public Liaison the great zebrafish images in your recent Development paper ( http://dev.biologists.org/content/140/24/4988.full). Do you have any similar images (free of copyright restrictions) that we would be able to post in the public-domain NIGMS Image and Video Gallery? You and your lab would of course be credited. Best regards, Sharon Sharon Reynolds, ELS Freelance Writer/Editor (Contractor) National Institute on Deafness and Other Communication Disorders National Institute of General Medical Sciences Phone: 410-271-8297 Kenneth Poss Duke University | Kenneth Poss, Duke University | animal, fish, organism | | 457 | 27,482 | 405 | | 953 | 85,571 | 844 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | 12/19/2013 | | Kenneth Poss, Duke University | | | Bioluminescent imaging in adult zebrafish - overhead view | Active | Photograph | | | | Chen-Hui Chen, Laboratory of Kenneth Poss, Duke University | 1,907 | 296,747 | 1,687 | Wed 12/11/2013 12:53 PM Dear Sharon, Yes, attached are several that are free of restrictions. Chen-Hui, the first author of the paper, captured these images. Thank you for posting our research images! Best, Ken On Dec 11, 2013, at 11:43 AM, Reynolds, Sharon (NIH/NIGMS) [C] wrote: Dear Dr. Poss, The program director of your NIGMS R01 grant, Susan Haynes, showed the NIGMS Office of Communications and Public Liaison the great zebrafish images in your recent Development paper ( http://dev.biologists.org/content/140/24/4988.full). Do you have any similar images (free of copyright restrictions) that we would be able to post in the public-domain NIGMS Image and Video Gallery? You and your lab would of course be credited. Best regards, Sharon Sharon Reynolds, ELS Freelance Writer/Editor (Contractor) National Institute on Deafness and Other Communication Disorders National Institute of General Medical Sciences Phone: 410-271-8297 Kenneth Poss Duke University | Kenneth Poss, Duke University | animal, fish, organism | | 457 | 19,508 | 405 | | 954 | 58,198 | 844 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | 12/19/2013 | | Kenneth Poss, Duke University | | | Bioluminescent imaging in adult zebrafish - lateral view | Active | Photograph | | | | Chen-Hui Chen, Laboratory of Kenneth Poss, Duke University | 1,906 | 499,691 | 1,687 | Wed 12/11/2013 12:53 PM Dear Sharon, Yes, attached are several that are free of restrictions. Chen-Hui, the first author of the paper, captured these images. Thank you for posting our research images! Best, Ken On Dec 11, 2013, at 11:43 AM, Reynolds, Sharon (NIH/NIGMS) [C] wrote: Dear Dr. Poss, The program director of your NIGMS R01 grant, Susan Haynes, showed the NIGMS Office of Communications and Public Liaison the great zebrafish images in your recent Development paper ( http://dev.biologists.org/content/140/24/4988.full). Do you have any similar images (free of copyright restrictions) that we would be able to post in the public-domain NIGMS Image and Video Gallery? You and your lab would of course be credited. Best regards, Sharon Sharon Reynolds, ELS Freelance Writer/Editor (Contractor) National Institute on Deafness and Other Communication Disorders National Institute of General Medical Sciences Phone: 410-271-8297 Kenneth Poss Duke University | Kenneth Poss, Duke University | animal, fish, organism | | 457 | 34,675 | 405 | | 953 | 105,875 | 844 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | 12/19/2013 | | Kenneth Poss, Duke University | | | Bioluminescent imaging in adult zebrafish 04 | Active | Photograph | | | | Chen-Hui Chen, Laboratory of Kenneth Poss, Duke University | 1,906 | 502,818 | 1,687 | Wed 12/11/2013 12:53 PM Dear Sharon, Yes, attached are several that are free of restrictions. Chen-Hui, the first author of the paper, captured these images. Thank you for posting our research images! Best, Ken On Dec 11, 2013, at 11:43 AM, Reynolds, Sharon (NIH/NIGMS) [C] wrote: Dear Dr. Poss, The program director of your NIGMS R01 grant, Susan Haynes, showed the NIGMS Office of Communications and Public Liaison the great zebrafish images in your recent Development paper ( http://dev.biologists.org/content/140/24/4988.full). Do you have any similar images (free of copyright restrictions) that we would be able to post in the public-domain NIGMS Image and Video Gallery? You and your lab would of course be credited. Best regards, Sharon Sharon Reynolds, ELS Freelance Writer/Editor (Contractor) National Institute on Deafness and Other Communication Disorders National Institute of General Medical Sciences Phone: 410-271-8297 Kenneth Poss Duke University | Kenneth Poss, Duke University | aniaml, fish, organism | | 457 | 34,956 | 405 | | 953 | 104,018 | 844 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | 12/19/2013 | | | | | RSV-Infected Cell | Active | Photograph | | | | Eric Alonas and Philip Santangelo, Georgia Institute of Technology and Emory University | 705 | 262,395 | 900 | Dear Chidinma, I'm very pleased that the work was featured on the NIGMS website and that it will be included in the research news blog. I attached to this email your text with one small addition. You are welcome to use the image (attached is a 300 dpi TIFF) with the summary and to include it your collection of research-related images. Thank you! Phil -- Philip J. Santangelo, PhD Associate Professor Department of Biomedical Engineering Georgia Tech and Emory University Atlanta, GA 30332 PH: 404-385-2116 | | structure, colorful | | 169 | 10,423 | 215 | | 352 | 29,989 | 450 | Cells, Genes, Tools and Techniques | | 2/4/2014 | Biomedical Beat Blog, January 2014 | Eric Alonas and Philip Santangelo, Georgia Institute of Technology and Emory University | | | Mouse colon with gut bacteria | Active | Illustration | | A section of mouse colon with gut bacteria (center, in green) residing within a protective pocket. Understanding how microorganisms colonize the gut could help devise ways to correct for abnormal changes in bacterial communities that are associated with disorders like inflammatory bowel disease. More information about the research behind this image can be found in a <a href=" http://biobeat.nigms.nih.gov/2013/09/how-some-bacteria-colonize-the-gut/" target=_blank>Biomedical Beat Blog</a> posting from September 2013. | | S. Melanie Lee, Caltech; Zbigniew Mikulski and Klaus Ley, La Jolla Institute for Allergy and Immunology | 2,742 | 1,922,805 | 2,469 | Hi Sharon, of course its fine to add the image to your gallery. Please credit the same people as those mentioned in the article. Let me know if the attached image is of sufficient resolution. Best wishes, Sarkis Sarkis K Mazmanian Professor of Biology & Biological Engineering California Institute of Technology 1200 E. California Bl. Mailcode: 156-29 Pasadena CA 91125 Ph: (626) 395-2356 http://sarkis.caltech.edu/Welcome.html | Sarkis K. Mazmanian, California Institute of Technology | structure, colorful | | 658 | 71,746 | 593 | | 1,371 | 203,229 | 1,235 | Cells, Tools and Techniques | | 1/27/2014 | | Sarkis K. Mazmanian, California Institute of Technology | | | Podocytes from a chronically diseased kidney | Active | Photograph | | | | Image courtesy of Matthias Kretzler, University of Michigan | 1,311 | 960,483 | 1,595 | Hi Sharon- of course - just credit as it is in the blog (Image courtesy of Matthias Kretzler) Matthias is my co-PI on this NIGMS grant. Olga On Mon, Jan 27, 2014 at 2:20 PM, Reynolds, Sharon (NIH/NIGMS) [C] < sharon.reynolds@nih.gov> wrote: Hi Dr. Troyanskaya, I work with the National Institute of General Medical Sciences? Office of Communications and Public Liaison. Back in October we saw the news release on your work on ?in silico nano-dissection? ( http://blogs.princeton.edu/research/2013/10/04/nano-dissection-identifies-genes-involved-in-kidney-disease-genome-research/). We manage an Image and Video Gallery ( http://images.nigms.nih.gov/index.cfm) featuring visuals from our grantees. May we have permission to put the image from that press release in the gallery, in the public domain? You and your lab would of course be credited however you see fit. Best regards, Sharon Sharon Reynolds, ELS Freelance Writer/Editor (Contractor) National Institute of General Medical Sciences Office of Communications and Public Liaison Phone: 410-271-8297 _____________________________________________________ Olga Troyanskaya, Ph.D. Professor Department of Computer Science and Lewis-Sigler Institute for Integrative Genomics Princeton University, NJ 08544 | Olga Troyanskaya and and Matthias Kretzler | structure | | 315 | 61,405 | 383 | | 656 | 117,363 | 798 | Cells, Tools and Techniques | | 1/27/2014 | | Olga Troyanskaya, Princeton University and Matthias Kretzler, University of Michigan | | | Myotonic dystrophy type 2 genetic defect | Active | Illustration | | | | Matthew Disney, Scripps Research Institute and Ilyas Yildirim, Northwestern University | 505 | 104,099 | 400 | | | structure, model, 3d | | 284 | 58,004 | 308 | | 252 | 8,111 | 200 | Injury and Illness, Molecular Structures | | 2/18/2014 | | Matthew Disney, Scripps Research Institute and Ilyas Yildirim, Northwestern University | | | Bee venom toxin destroying a cell | Active | Video | | This video condenses 6.5 minutes into less than a minute to show how the toxin in bee venom, called melittin, destroys an animal or bacterial cell. What looks like a red balloon is an artificial cell filled with red dye. Melittin molecules are colored green and float on the cell's surface like twigs on a pond. As melittin accumulates on the cell's membrane, the membrane expands to accommodate it. In the video, the membrane stretches into a column on the left. When melittin levels reach a critical threshold, countless pinhole leaks burst open in the membrane. The cell's vital fluids (red dye in the video) leak out through these pores. Within minutes, the cell collapses. More information about the research behind this image can be found in a <a href=" http://biobeat.nigms.nih.gov/2013/09/cool-video-how-bee-venom-toxin-kills-cells/" target=_blank>Biomedical Beat Blog posting</a> from September 2013. | | Huey Huang, Rice University | | 3,693,382 | | Hi Sharon, Here are one figure and one movie from our recent bee-venom paper. I attach another figure the Rice News release included. ------------------------------------- Huey W. Huang Professor of Physics, Rice University Houston, TX 77251-1892 Tel: 713 348 4899; Fax: 713 348 4150 Email: hwhuang@rice.edu Homepage: http://hwhuang.rice.edu ------------------------------------- On 1/28/2014 10:29 AM, Reynolds, Sharon (NIH/NIGMS) [C] wrote: > Great, thanks! High-definition files would be fantastic. > > Best regards, > Sharon > > Sharon Reynolds, ELS > Freelance Writer/Editor (Contractor) > National Institute of General Medical Sciences Office of > Communications and Public Liaison > Phone: 410-271-8297 > ________________________________ > From: Huey Huang [hwhuang@rice.edu] > Sent: Monday, January 27, 2014 4:20 PM > To: Reynolds, Sharon (NIH/NIGMS) [C] > Subject: Re: Request from NIGMS Image and Video Gallery > > Dear Sharon, > > Yes, of course. Please use our images in your image and video gallery. Let me know if you want the high definition files. > > Best regards, > Huey > > ..................................... > Huey W. Huang > Professor of Physics, Rice University > Houston, TX 77251-1892 > Tel:713-3484899; Fax:713-3484150 > Email: hwhuang@rice.edu< mailto:Email: hwhuang@rice.edu> > Homepage: http://hwhuang.rice.edu > ..................................... > | Huey Huang, Rice University | celluar structure | | | | | | | | | Cells | | 4/22/2014 | Biomedical Beat, September 2013 | Huey Huang, Rice University | | | Human blood cells with Borrelia hermsii, a bacterium that causes relapsing fever | Active | Photograph | | Relapsing fever is caused by a bacterium and transmitted by certain soft-bodied ticks or body lice. The disease is seldom fatal in humans, but it can be very serious and prolonged. This scanning electron micrograph shows <em>Borrelia hermsii</em> (green), one of the bacterial species that causes the disease, interacting with red blood cells. Micrograph by Robert Fischer, NIAID. <br></br> For more information on this see, <a href=" https://www.cdc.gov/relapsing-fever/index.html">relapsing fever.</a><br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | NIAID/NIH | 4,500 | 8,184,979 | 6,000 | SEM of Borrelia hermsii, the causative agent of relapsing fever, interacting with red blood cells. From NIAID: Borrelia hermsii on red blood cells PI: Dr. Tom Schwan Laboratory of Zoonotic Pathogens Micrograph by: Dr. Robert Fischer | Tom Schwan, NIAID Laboratory of Zoonotic Pathogens | Life magnified, structure, bacteria, | | 1,079 | 228,604 | 1,439 | | 2,250 | 914,991 | 3,000 | Cells, Injury and Illness, Tools and Techniques | | | Dulles airport exhibit | NIAID | | | Rotavirus structure | Active | Illustration | | This image shows a computer-generated, three-dimensional map of the rotavirus structure. This virus infects humans and other animals and causes severe diarrhea in infants and young children. By the age of five, almost every child in the world has been infected with this virus at least once. Scientists have found a vaccine against rotavirus, so in the United States there are very few fatalities, but in developing countries and in places where the vaccine is unavailable, this virus is responsible for more than 200,000 deaths each year.<Br><Br> The rotavirus comprises three layers: the outer, middle and inner layers. On infection, the outer layer is removed, leaving behind a "double-layered particle." Researchers have studied the structure of this double-layered particle with a transmission electron microscope. Many images of the virus at a magnification of ~50,000x were acquired, and computational analysis was used to combine the individual particle images into a three-dimensional reconstruction. <Br><Br>The image was rendered by Melody Campbell (PhD student at TSRI). Work that led to the 3D map was published in Campbell et al. Movies of ice-embedded particles enhance resolution in electron cryo-microscopy. Structure. 2012;20(11):1823-8. PMCID: PMC3510009. <Br><Br>This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | National Resource for Automated Molecular Microscopy, The Scripps Research Institute | 7,200 | 23,628,258 | 7,200 | From: Bridget Carragher [ mailto:bcarr@scripps.edu] Sent: Thursday, April 24, 2014 7:51 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Cc: Gregurick, Susan (NIH/NIGMS) [E]; Smith, Kelley (NIH/NIGMS) [C]; Thea Clarke; Potter Clint; Melody Campbell Subject: Re: OK to put rotavirus image into public domain? Yes indeed of course. But if possible can you use the image credit on the web site as follows. This refers to the paper so at least to som extent recognizes the large cast of characters that contributed to the image?. The image was rendered by Melody Campbell (PhD student at TSRI). Work that led to the 3D map was published in: Campbell MG, Cheng A, Brilot AF, Moeller A, Lyumkis D, Veesler D, Pan J, Harrison SC, Potter CS, Carragher B, Grigorieff N. Movies of ice-embedded particles enhance resolution in electron cryo-microscopy. Structure. 2012;20(11):1823-8. PMCID: PMC3510009. [stuff deleted] On Apr 24, 2014, at 2:33 PM, Machalek, Alisa Zapp (NIH/NIGMS) [E] < MachaleA@nigms.nih.gov> wrote: Hi again, Bridget, Your image is officially in the Dulles exhibit! Would NIGMS also be able to put it into our public domain Image and Video Gallery at http://images.nigms.nih.gov/? Best, Alisa | Bridget Carragher, The Scripps Research Institute, La Jolla, CA | Life Magnified, structure, 3d | | 1,800 | 362,727 | 1,800 | | 3,600 | 1,540,239 | 3,600 | Molecular Structures, Tools and Techniques | | | Dulles airport exhibit | Bridget Carragher, The Scripps Research Institute, La Jolla, CA | | | HIV-1 virus in the colon | Active | Photograph | | A tomographic reconstruction of the colon shows the location of large pools of HIV-1 virus particles (in blue) located in the spaces between adjacent cells. The purple objects within each sphere represent the conical cores that are one of the structural hallmarks of the HIV virus. More information about the research behind this image can be found in a <a href=" http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1003899" target=_blank>PLOS Pathogens</a> article from January 30, 2014. | | Mark Ladinsky, Laboratory of Pamela J. Bjorkman, California Institute of Technology | 4,500 | 3,124,997 | 2,348 | Dear Sharon, Attached is the full-resolution version of the image you kindly mentioned. I hope this is the one you wanted. I will be happy to provide others, as well as movies of the tomographic data, if you are interested. Please let me know if there?s any problems with the image, or if you should have any questions. Best wishes, ?Mark Ladinsky ** From: Mark S. Ladinsky [ mailto:ladinsky@caltech.edu] Sent: Monday, February 10, 2014 11:53 AM To: Reynolds, Sharon (NIH/NIGMS) [C] Cc: Pamela Bjorkman Subject: Re: Image from NIH-funded paper/press release Dear Sharon, Thank you for the kind words and for your interest in our work. Of course, you have permission to use the image. If you would like I can provide you with higher-resolution versions of that and other images from our recent paper. Thank you again for your interest in our work and please let me know if I can be of further help. With best wishes, ?Mark Ladinsky ================================ Mark S. Ladinsky Electron Microscopy & Tomography Pamela J. Bjorkman's Laboratory CHEETAH Tissue-EM Core Manager California Institute of Technology Division of Biology & Biological Engineering, 114-96 1200 E. California Blvd. Pasadena, CA. 91125 (626) 395-2453 Email: ladinsky@caltech.edu Email: marksl2@mac.com | Pamela J. Bjorkman, California Institute of Technology | structure, organ | | 1,080 | 259,264 | 563 | | 2,250 | 863,138 | 1,174 | Cells, Injury and Illness, Tools and Techniques | | 2/13/2014 | | Mark Ladinsky, California Institute of Technology | | | Relapsing fever bacterium (gray) and red blood cells | Inactive | Photograph | | Relapsing fever is caused by a bacterium and transmitted by certain soft-bodied ticks or body lice. The disease is seldom fatal in humans, but it can be very serious and prolonged. This scanning electron micrograph shows Borrelia hermsii (green), one of the bacterial species that causes the disease, interacting with red blood cells. Micrograph by Robert Fischer, NIAID. Related to <a href="/Pages/DetailPage.aspx?imageID2=3586">image 3586</a>. <br />For more information about relapsing fever, see <a href=" https://www.cdc.gov/relapsing-fever/index.html"> https://www.cdc.gov/relapsing-fever/index.html</a>.<br /> This image is part of the Life: Magnified collection, which was displayed in the Gateway Gallery at Washington Dulles International Airport June 3, 2014, to January 21, 2015. To see all 46 images in this exhibit, go to <a href=" https://www.nigms.nih.gov/education/life-magnified/Pages/default.aspx"> https://www.nigms.nih.gov/education/life-magnified/Pages/default.aspx</a> | | NIAID/NIH | 4,500 | 642,616 | 6,000 | SEM of Borrelia hermsii, the causative agent of relapsing fever, interacting with red blood cells. From NIAID: Borrelia hermsii on red blood cells PI: Dr. Tom Schwan Laboratory of Zoonotic Pathogens Micrograph by: Dr. Robert Fischer | Tom Schwan, NIAID Laboratory of Zoonotic Pathogens | Life Magnified, structure, bacteria | | 1,125 | 40,950 | 1,500 | | 2,250 | 161,406 | 3,000 | Injury and Illness, Molecular Structures, Tools and Techniques | | | Dulles airport exhibit | NIAID | | | V. Cholerae Biofilm | Active | Photograph | | | | K. Drescher and C. Nadell from B. Bassler's laboratory, Princeton University and Howard Hughes Medical Institute | 981 | 365,479 | 2,412 | Sure, to publishing it with the summary, to using it in the future, and to having it in the gallery for people to use. In all cases, the credit should be (something like) Image by K. Drescher and C. Nadell from B. Bassler's laboratory, Princeton University and Howard Hughes Medical Institute. Please let me know if you need anything else. Many thanks again. BB | | Structures | | 235 | 18,180 | 578 | | 490 | 50,664 | 1,206 | Cells, Tools and Techniques | | 3/7/2014 | | | | | Cytonemes in developing fruit fly cells | Active | Photograph | | Scientists have long known that multicellular organisms use biological molecules produced by one cell and sensed by another to transmit messages that, for instance, guide proper development of organs and tissues. But it's been a puzzle as to how molecules dumped out into the fluid-filled spaces between cells can precisely home in on their targets. Using living tissue from fruit flies, a team led by Thomas Kornberg of the University of California, San Francisco, has shown that typical cells in animals can talk to each other via long, thin cell extensions called cytonemes (Latin for "cell threads") that may span the length of 50 or 100 cells. The point of contact between a cytoneme and its target cell acts as a communications bridge between the two cells. More information about the research behind this image can be found in a <a href=" http://biobeat.nigms.nih.gov/2014/02/animal-cells-reach-out-and-touch-to-communicate/" target=_blank>Biomedical Beat </a>Blog posting from February 2014. | | Sougata Roy, University of California, San Francisco | 586 | 270,947 | 980 | From: Ben-Ari, Elia (NIH/NIGMS) [C] Sent: Monday, February 17, 2014 4:53 PM To: Reynolds, Sharon (NIH/NIGMS) [C] Cc: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: FW: Cytoneme image Hi Sharon and Alisa, Attached is an image showing threadlike cytonemes in the developing tracheal system (air sacs, to be specific) of a fruit fly. We have permission from Dr. Thomas Kornbeg of UCSF (see yellow highlighting below) to use it in our image library (and for my Feb. BioBeat item). The cytonemes carry signals between cells in the developing fruit fly, similar to the way neurons convey signals in the nervous system. The credit for this micrograph goes to Sougata Roy, also of UCSF. The plasma membranes and cytonemes are labeled with green fluorescent protein. Let me know if you need further info/help in developing a lay language description. I’ve pasted the text of my BioBeat item below, which may help. Elia Scientists have long known that multicellular organisms use biological molecules produced by one cell and sensed by another to transmit messages that, for instance, guide proper development of organs and tissues. But it’s been a puzzle as to how molecules dumped out into the fluid-filled spaces between cells can precisely home in on their targets. Using living tissue from fruit flies, a team led by Thomas Kornberg of the University of California, San Francisco, has shown that typical cells in animals can talk to each other via long, thin cell extensions called cytonemes (Latin for “cell thread[s]”) that may span the length of 50 or 100 cells. The point of contact between a cytoneme and its target cell acts as a communications bridge between the two cells. Until now, only nerve cells (neurons) were known to communicate this way. “This is an exciting finding,” says NIGMS’ Tanya Hoodbhoy. “Neurons are not the only ‘reach out and touch someone’ cells.” From: Kornberg, Tom [ mailto:Tom.Kornberg@ucsf.edu] Sent: Friday, February 14, 2014 2:00 PM To: Ben-Ari, Elia (NIH/NIGMS) [C] Subject: Re: Cytoneme image It helps to actually attach it! -- Thomas Kornberg Cardiovascular Research Institute 555 Mission Bay South, Room 252z University of California San Francisco, CA 94158 Phone: 415-476-8821 From: "Ben-Ari, Elia (NIH/NIGMS) [C]" < elia.ben-ari@nih.gov> Date: Fri, 14 Feb 2014 18:56:43 +0000 To: "Kornberg, Tom" < Tom.Kornberg@ucsf.edu> Subject: RE: Cytoneme image Many thanks, Tom. The attachment didn’t come through, though. Elia From: Kornberg, Tom [ mailto:Tom.Kornberg@ucsf.edu] Sent: Friday, February 14, 2014 1:37 PM To: Ben-Ari, Elia (NIH/NIGMS) [C] Subject: Re: Cytoneme image Elia- Please see attached figure of an Air Sac Primordium that expresses CD8:GFP that marks its plasma membranes and cytonemes. Micrograph taken by Sougata Roy. You may use it for your purposes. Tom -- Thomas Kornberg Cardiovascular Research Institute 555 Mission Bay South, Room 252z University of California San Francisco, CA 94158 Phone: 415-476-8821 From: "Ben-Ari, Elia (NIH/NIGMS) [C]" < elia.ben-ari@nih.gov> Date: Fri, 14 Feb 2014 16:21:50 +0000 To: "Kornberg, Tom" < Tom.Kornberg@ucsf.edu> Subject: Cytoneme image Hello Tom, My understanding, after checking with a colleague, is that if AAAS holds the copyright on the figure it will also apply to the photo without the arrows and lettering. Do you have a photo/illustration of a cytoneme (or cytonemes) that you retain the rights to? And if so, may we use it for the purposes I outlined below? Thanks again for your help. Elia From: Kornberg, Tom [ mailto:Tom.Kornberg@ucsf.edu] Sent: Wednesday, February 12, 2014 5:13 PM To: Ben-Ari, Elia (NIH/NIGMS) [C] Subject: Re: Please review: Short piece on your recent work for NIGMS news blog You certainly have my permission, but should probably assume that AAAS will hold a copyright on the figure as they will publish it with the arrows and lettering. Does their copyright still apply if you use it without the arrows and lettering? -- Thomas Kornberg Cardiovascular Research Institute 555 Mission Bay South, Room 252z University of California San Francisco, CA 94158 Phone: 415-476-8821 From: "Ben-Ari, Elia (NIH/NIGMS) [C]" < elia.ben-ari@nih.gov> Date: Wed, 12 Feb 2014 22:03:40 +0000 To: "Kornberg, Tom" < Tom.Kornberg@ucsf.edu> Subject: RE: Please review: Short piece on your recent work for NIGMS news blog Thanks very much, Tom. Does AAAS hold a copyright on the figure? If so, I’d need to get their permission to use it. Also, who should be credited for the image? If you retain the copyright, do you grant NIGMS permission to use it as part of our Biomedical Beat blog? And would you also be willing to grant us permission to use the image in our image gallery, provided that users give proper credit? (Images in the gallery could be used for educational, news media, or research purposes.) If not, no problem. Apologies for all the questions. Elia From: Kornberg, Tom [ mailto:Tom.Kornberg@ucsf.edu] Sent: Wednesday, February 12, 2014 4:50 PM To: Ben-Ari, Elia (NIH/NIGMS) [C] Subject: Re: Please review: Short piece on your recent work for NIGMS news blog Elia- Your summary is fine. I've attached two versions of a figure (with and without arrows&lettering) and a legend. The figure will appear in the print version of Science, that will be a one page summary (also attached). The full article will be published online only. Best, Tom -- Thomas Kornberg Cardiovascular Research Institute 555 Mission Bay South, Room 252z University of California San Francisco, CA 94158 Phone: 415-476-8821 From: "Ben-Ari, Elia (NIH/NIGMS) [C]" < elia.ben-ari@nih.gov> Date: Wed, 12 Feb 2014 19:58:06 +0000 To: " tkornberg@ucsf.edu" < tkornberg@ucsf.edu> Subject: Please review: Short piece on your recent work for NIGMS news blog Dear Dr. Kornberg: I’m writing to let you know that we’ve featured a link to the news release on your recent Science paper on cytonemes on the NIGMS Web site. In addition, we plan to include a brief summary of your advance on our research news blog, Biomedical Beat. Could you please review the attached draft and send me any comments by Friday, Feb. 14? We’d like to publish a relevant image with the summary. Is there a nice, clear image of cytonemes that we might use with the story that you could send along? Perhaps one of the panels from a figure in theScience paper (minus the arrows)? Please also send a brief description of the image let me know who should be credited, as we include photo credits (name, affiliation) in these blog items. If you provide an image, please let me know in writing (email is fine) that you grant us permission to feature the image on our blog. In addition, we would love to include it in our collection of research-related images. Images in this gallery are made available for educational, news media, or research purposes, provided that users credit the source of the image, i.e., you or whomever you indicate. If you grant us permission to feature the image in our gallery, please send a high-resolution version. In the future, we would very much like to work with you and the press officers at your institution to help publicize the results of NIGMS support, so please let us know when you have another manuscript accepted for publication that describes a significant finding we funded. We will, of course, honor all embargoes on journal articles. Contact us at 301-496-7301 or info@nigms.nih.gov. Thanks for your help! Best regards, Elia Ben-Ari --------- Elia Ben-Ari, PhD Science writer (contractor) Office of Communications and Public Liaison National Institute of General Medical Sciences National Institutes of Health elia.ben-ari@nih.gov OCPL main number: 301-496-7301 | Thomas Kornberg , University of California, San Francisco, | strcture | | 140 | 23,680 | 235 | | 293 | 45,636 | 490 | Cells, Molecular Structures, Tools and Techniques | | | | Sougata Roy, University of California, San Francisco | | | Math from the heart | Active | Video | | Watch a cell ripple toward a beam of light that turns on a movement-related protein. | | Suncica Canic, University of Houston | | 7,158,663 | | | Suncica Canic | video, technology, stent | | | | | | | | | Cells, Tools and Techniques | | 5/16/2014 | | | | | Isolated Planarian Pharynx | Active | Photograph | | The feeding tube, or pharynx, of a planarian worm with cilia shown in red and muscle fibers shown in green | | Carrie Adler, Ph.D., Stowers Institute for Medical Research | 347 | 71,808 | 325 | Dear Chidinma, Many thanks for the interest in our work and for showcasing on both the NIGMS website and Biomedical Beat. It is greatly appreciated. Regarding the text, it is a rather accurate and succinct assessment of the work. As per your request, I am enclosing a high resolution copy of the image, which we grant you permission to use. Let me know if you need anything else. Sincerely, Alejandro ------------------------------------------------------------------------------------------------------------ Alejandro Sánchez Alvarado, Ph.D. Investigator, Howard Hughes Medical Institute & Stowers Institute for Medical Research 1000 E. 50th Street Kansas City, MO 64110 Adjunct Professor of Neurobiology & Anatomy University of Utah School of Medicine (816) 926-4529 Office (816) 926-4307 Lab (816) 926--2056 Fax http://planaria.stowers.org Administrative Assistant: Mrs. Yvonne Jenkin (816) 926-4530 yje@stowers.org | Alejandro Sánchez Alvarado | structure | | 329 | 111,986 | 308 | | 174 | 26,438 | 162 | Cells, Genes, Molecular Structures | | 5/16/2014 | | | | | Fruit fly spermatids | Active | Photograph | | Developing spermatids (precursors of mature sperm cells) begin as small, round cells and mature into long-tailed, tadpole-shaped ones. In the sperm cell's head is the cell nucleus; in its tail is the power to outswim thousands of competitors to fertilize an egg. As seen in this microscopy image, fruit fly spermatids start out as groups of interconnected cells. A small lipid molecule called PIP2 helps spermatids tell their heads from their tails. Here, PIP2 (red) marks the nuclei and a cell skeleton-building protein called tubulin (green) marks the tails. When PIP2 levels are too low, some spermatids get mixed up and grow with their heads at the wrong end. Because sperm development is similar across species, studies in fruit flies could help researchers understand male infertility in humans. | | Lacramioara Fabian and Julie Brill, The Hospital for Sick Children, Toronto, Canada | 2,425 | 1,581,337 | 2,550 | -----Original Message----- From: Lacramioara Fabian [ mailto:lala.fabian@utoronto.ca] Sent: Wednesday, December 11, 2013 5:47 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Cc: fuller@cmgm.stanford.edu; Ben-Ari, Elia (NIH/NIGMS) [C]; Carlson, Emily (NIH/NIGMS) [E]; julie.brill@sickkids.ca Subject: Re: permission for NIH to use your 2010 cover image? Dear Alisa, Thank you for selecting my cover image for all of these very exciting publications and events that will help spread the beauty of science. I am very happy to give you permission to use it in all the mentioned cases. I am cross copying Dr. Julie Brill on this email. She is my supervisor and also the corresponding author on the MBoC paper. Thank you again and good luck with your projects. Best wishes, Lacramioara ----------------------- Lacramioara Lala Fabian, PhD Research Associate Hospital for Sick Children Department of Cell Biology Quoting "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov>: > Dear Drs. Fabian and Fuller, > My office at the U.S. National Institutes of Health would like to > feature the cover image (attached) from your 2010 MBoC > paper< http://www.molbiolcell.org/content/21/9/1546>. With your > permission, we hope to include the image in an online article for > our Inside Life > Science< http://publications.nigms.nih.gov/insidelifescience/> > series. Articles in the Inside Life Science series also appear on > the commercial LiveScience.com< http://www.livescience.com/> website. > > Do we have permission to use your image for Inside Life Science and > post it on LiveScience.com? > > You may be wondering why we're asking about an image that was > published a few years ago. The image was one of a dozen or so > recently selected by staff at the American Society of Cell Biology > for its beauty. Together, ASCB and NIH's National Institute of > General Medical Sciences are collecting stunning sc | Lacramioara Fabian and Julie Brill Cover art: https://www.molbiolcell.org/toc/mboc/21/9 Confocal micrograph of Drosophila melanogaster spermatids. The spermatids develop in highly polarized syncytial cysts that grow to a length of nearly 2 mm. Here phosphatidylinositol 4,5-bisphosphate (PIP2; red) marks the nuclei, and polyglycylated tubulin (green) marks the sperm tails. In addition to its nuclear localization, PIP2 also localizes to the growing ends of spermatid cysts (not shown) and is required for spermatid cyst polarity. See the article by Fabian et al. on p. 1546 of this issue of MBoC. (Image: Lacramioara Fabian, The Hospital for Sick Children, Toronto, Ontario, Canada; anti–polyglycylated tubulin antibody courtesy of Martin Gorovsky, University of Rochester) | fertility, structure, Grant 2R01GM062276 | | 598 | 226,435 | 630 | | 1,212 | 810,450 | 1,275 | Cells, Genes, Molecular Structures, Tools and Techniques | | 5/2/2014 | | Lacramioara Fabian, The Hospital for Sick Children, Toronto, Canada | | | Bubonic plague bacteria on part of the digestive system in a rat flea | Active | Photograph | | Here, bubonic plague bacteria (yellow) are shown in the digestive system of a rat flea (purple). The bubonic plague killed a third of Europeans in the mid-14th century. Today, it is still active in Africa, Asia, and the Americas, with as many as 2,000 people infected worldwide each year. If caught early, bubonic plague can be treated with antibiotics. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | B. Joseph Hinnebusch, Elizabeth Fischer, and Austin Athman, National Institute of Allergy and Infectious Diseases, National Institutes of Health | 5,045 | 4,785,606 | 6,000 | A 120 MB version, with the dimensions of 48 by 40 inches at 125 dpi, is available in the Dulles exhibit folder in the OCPL shared drive. A smaller 35 MB version is now inactive image file ID 3642. Alisa Machalek obtained this and other NIAID images from Anita Mora and Elizabeth Fischer of Rocky Mt. NIAID. She cc'ed NIAID PIOs Ken Pekoc and Julie Marquardt. | B. Joseph Hinnebusch, Elizabeth Fischer and Austin Athman, NIAID | Life Magnified, 3d, colorful | | 1,211 | 376,030 | 1,440 | | 2,522 | 1,126,063 | 3,000 | Cells, Injury and Illness | | | Dulles 2014 | NIAID | | | Heart rates time series image | Active | Photograph | | These time series show the heart rates of four different individuals. Automakers use steel scraps to build cars, construction companies repurpose tires to lay running tracks, and now scientists are reusing previously discarded medical data to better understand our complex physiology. Through a website called PhysioNet developed in part by Beth Israel Deaconess Medical Center cardiologist Ary Goldberger, scientists can access complete physiologic recordings, such as heart rate, respiration, brain activity and gait. They then can use free software to analyze the data and find patterns in it. The patterns could ultimately help health care professionals diagnose and treat health conditions like congestive heart failure, sleeping disorders, epilepsy and walking problems. PhysioNet is supported by NIH's National Institute of Biomedical Imaging and Bioengineering as well as by NIGMS. | | Madalena Costa and Ary Goldberger, Beth Israel Deaconess Medical Center | 284 | 93,606 | 308 | | Ary Goldberger, Beth Israel Deaconess Medical | technology, chart, graph, data analysis | | 284 | 93,606 | 308 | | 284 | 93,606 | 308 | Tools and Techniques | | 5/29/2014 | 2/09 BB | Madalena Costa and Ary Goldberger, Beth Israel Deaconess Medical Center | | | Fly cells | Active | Photograph | | If a picture is worth a thousand words, what's a movie worth? For researchers studying cell migration, a "documentary" of fruit fly cells (bright green) traversing an egg chamber could answer longstanding questions about cell movement. See <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=2315">2315</a> for video. | | Denise Montell, Johns Hopkins University School of Medicine | 500 | 19,166 | 500 | | Denise Montell, GDB | celluar movement, | | 119 | 1,375 | 119 | | 250 | 2,969 | 250 | Cells, Tools and Techniques | | 5/29/2014 | Featured in the June 20, 2007, issue of <em>Biomedical Beat</em> | Denise Montell, Johns Hopkins University School of Medicine | | | DNA replication origin recognition complex (ORC) | Active | Illustration | | A study published in March 2012 used cryo-electron microscopy to determine the structure of the DNA replication origin recognition complex (ORC), a semi-circular, protein complex (yellow) that recognizes and binds DNA to start the replication process. The ORC appears to wrap around and bend approximately 70 base pairs of double stranded DNA (red and blue). Also shown is the protein Cdc6 (green), which is also involved in the initiation of DNA replication. Related to video <a href="/Pages/DetailPage.aspx?imageID2=3307">3307</a> that shows the structure from different angles. From a Brookhaven National Laboratory <a href=" https://www.bnl.gov/newsroom/news.php?a=111391" target="_blank">news release</a>, "Study Reveals How Protein Machinery Binds and Wraps DNA to Start Replication." | | Huilin Li, Brookhaven National Laboratory, and Bruce Stillman, Cold Spring Harbor Laboratory | 720 | 409,437 | 702 | | Huilin Li; Bruce Stillman | 3D, structure | | 316 | 134,445 | 308 | | 360 | 24,963 | 351 | Genes, Molecular Structures, Tools and Techniques | | | | Huilin Li, Brookhaven National Laboratory | | | Developing zebrafish fin | Active | Photograph | | Originally from the waters of India, Nepal, and neighboring countries, zebrafish can now be found swimming in science labs (and home aquariums) throughout the world. This fish is a favorite study subject for scientists interested in how genes guide the early stages of prenatal development (including the developing fin shown here) and in the effects of environmental contamination on embryos.<Br><Br> In this image, green fluorescent protein (GFP) is expressed where the gene sox9b is expressed. Collagen (red) marks the fin rays, and DNA, stained with a dye called DAPI, is in blue. sox9b plays many important roles during development, including the building of the heart and brain, and is also necessary for skeletal development. At the University of Wisconsin, researchers have found that exposure to contaminants that bind the aryl-hydrocarbon receptor results in the downregulation of sox9b. Loss of sox9b severely disrupts development in zebrafish and causes a life-threatening disorder called campomelic dysplasia (CD) in humans. CD is characterized by cardiovascular, neural, and skeletal defects. By studying the roles of genes such as sox9b in zebrafish, scientists hope to better understand normal development in humans as well as how to treat developmental disorders and diseases.<Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Jessica Plavicki, University of Wisconsin, Madison | 8,768 | 7,741,439 | 8,768 | NIEHS funding featured in Dulles 2014 exhibit A larger version of this (10,000 pixels square, 286 MB) is in the shared OCPL folder/DULLES airport images | | colorful, life magnified, structure | | 1,440 | 311,499 | 1,440 | | 3,000 | 979,421 | 3,000 | Cells, Genes, Tools and Techniques | | | | Jessica Plavicki | | | Skin cell (keratinocyte) | Active | Photograph | | This normal human skin cell was treated with a growth factor that triggered the formation of specialized protein structures that enable the cell to move. We depend on cell movement for such basic functions as wound healing and launching an immune response. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Torsten Wittmann, University of California, San Francisco | 3,600 | 2,185,189 | 5,400 | Dulles 2014 exhibit | Torsten Wittmann, University of California, San Francisco | colorful | | 864 | 159,012 | 1,296 | | 1,800 | 485,714 | 2,700 | Cells | | 6/4/2014 | Dulles exhibit 2014 | Torsten Wittmann, University of California, San Francisco | | | Fat cells (red) and blood vessels (green) | Active | Photograph | | A mouse's fat cells (red) are shown surrounded by a network of blood vessels (green). Fat cells store and release energy, protect organs and nerve tissues, insulate us from the cold, and help us absorb important vitamins. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Daniela Malide, National Heart, Lung, and Blood Institute, National Institutes of Health | 8,768 | 4,963,753 | 8,768 | Dulles 2014 exhibit | Daniela Malide, National Heart, Lung, and Blood Institute, Natio | 3D model, structure | | 2,500 | 364,185 | 2,500 | | 5,000 | 1,346,831 | 5,000 | Cells, Tools and Techniques | | 6/4/2014 | | Daniela Malide, National Heart, Lung, and Blood Institute, National Institutes of Health | | | Brain showing hallmarks of Alzheimer's disease | Active | Photograph | | Along with blood vessels (red) and nerve cells (green), this mouse brain shows abnormal protein clumps known as plaques (blue). These plaques multiply in the brains of people with Alzheimer's disease and are associated with the memory impairment characteristic of the disease. Because mice have genomes nearly identical to our own, they are used to study both the genetic and environmental factors that trigger Alzheimer's disease. Experimental treatments are also tested in mice to identify the best potential therapies for human patients. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Alvin Gogineni, Genentech | 2,056 | 1,459,107 | 2,056 | Dulles 2014 exhibit Alvin Gogineni said this image had not been published before. | Alvin Gogineni, Genentech | illness, structure, | | 493 | 82,479 | 493 | | 1,028 | 308,644 | 1,028 | Cells, Genes, Injury and Illness, Tools and Techniques | | 6/4/2014 | Dulles 2014 exhibit | Alvin Gogineni, Genentech | | | Flower-forming cells in a small plant related to cabbage (Arabidopsis) | Active | Photograph | | In plants, as in animals, stem cells can transform into a variety of different cell types. The stem cells at the growing tip of this Arabidopsis plant will soon become flowers. Arabidopsis is frequently studied by cellular and molecular biologists because it grows rapidly (its entire life cycle is only 6 weeks), produces lots of seeds, and has a genome that is easy to manipulate. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Arun Sampathkumar and Elliot Meyerowitz, California Institute of Technology | 1,024 | 397,488 | 1,024 | Dulles 2014 exhibit | Arun Sampathkumar and Elliot Meyerowitz, California Institute of | Structure | | 246 | 18,591 | 246 | | 512 | 62,353 | 512 | Cells, Molecular Structures | | 6/4/2014 | | Arun Sampathkumar and Elliot Meyerowitz, California Institute of Technology | | | Salivary gland in the developing fruit fly | Active | Photograph | | For fruit flies, the salivary gland is used to secrete materials for making the pupal case, the protective enclosure in which a larva transforms into an adult fly. For scientists, this gland provided one of the earliest glimpses into the genetic differences between individuals within a species. Chromosomes in the cells of these salivary glands replicate thousands of times without dividing, becoming so huge that scientists can easily view them under a microscope and see differences in genetic content between individuals. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Richard Fehon, University of Chicago | 333 | 95,912 | 786 | Dulles 2014 exhibit | Richard Fehon, University of Chicago | Life Magnified, model, drosophila | | 130 | 80,823 | 308 | | 166 | 16,249 | 393 | Cells, Tools and Techniques | | 6/4/2014 | | Richard Fehon, University of Chicago | | | Fruit fly ovary | Active | Photograph | | A fruit fly ovary, shown here, contains as many as 20 eggs. Fruit flies are not merely tiny insects that buzz around overripe fruit—they are a venerable scientific tool. Research on the flies has shed light on many aspects of human biology, including biological rhythms, learning, memory, and neurodegenerative diseases. Another reason fruit flies are so useful in a lab (and so successful in fruit bowls) is that they reproduce rapidly. About three generations can be studied in a single month. <Br><Br> Related to image <a href="/pages/DetailPage.aspx?imageid2=3656" target=_blank>3656</a>. This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Hogan Tang and Denise Montell, Johns Hopkins University and University of California, Santa Barbara | 4,955 | 4,623,310 | 5,000 | Dulles 2014 exhibit | Grant: R01GM046425 | drosophila | | 1,238 | 140,103 | 1,250 | | 2,477 | 627,673 | 2,500 | Cells, Genes | | | | Denise Montell, Johns Hopkins University and University of California, Santa Barbara | | | Pollen grains: male germ cells in plants and a cause of seasonal allergies | Active | Photograph | | Those of us who get sneezy and itchy-eyed every spring or fall may have pollen grains, like those shown here, to blame. Pollen grains are the male germ cells of plants, released to fertilize the corresponding female plant parts. When they are instead inhaled into human nasal passages, they can trigger allergies. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Edna, Gil, and Amit Cukierman, Fox Chase Cancer Center, Philadelphia, Pa. | 3,600 | 3,100,690 | 5,400 | Dulles 2014 exhibit | Edna, Gil and Amit Cukierman, Fox Chase Cancer Center, Pa. | Allergy, structure, sex | | 864 | 219,679 | 1,296 | | 1,800 | 697,594 | 2,700 | Cells, Genes | | 6/4/2014 | | Edna, Gil, and Amit Cukierman, Fox Chase Cancer Center, Philadelphia, Pa. | | | Human liver cell (hepatocyte) | Active | Photograph | | Hepatocytes, like the one shown here, are the most abundant type of cell in the human liver. They play an important role in building proteins; producing bile, a liquid that aids in digesting fats; and chemically processing molecules found normally in the body, like hormones, as well as foreign substances like medicines and alcohol. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Donna Beer Stolz, University of Pittsburgh | 5,400 | 1,208,781 | 3,600 | Dulles Exhibit 2014 | Donna Beer Stolz, University of Pittsburgh | Organ, human body | | 1,296 | 103,681 | 864 | | 2,700 | 306,483 | 1,800 | Cells | | 6/4/2014 | | Donna Beer Stolz, University of Pittsburgh | | | Tiny strands of tubulin, a protein in a cell's skeleton | Active | Photograph | | Just as our bodies rely on bones for structural support, our cells rely on a cellular skeleton. In addition to helping cells keep their shape, this cytoskeleton transports material within cells and coordinates cell division. One component of the cytoskeleton is a protein called tubulin, shown here as thin strands. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Pakorn Kanchanawong, National University of Singapore and National Heart, Lung, and Blood Institute, National Institutes of Health; and Clare Waterman, National Heart, Lung, and Blood Institute, National Institutes of Health | 5,352 | 4,642,390 | 3,959 | Dulles Exhibit 2014 | Pakorn Kanchanawong, Clare Waterman; Waterman was an NIGMS grantee before going to NHLBI, but unclear if NIGMS funding was used for this image. | Celluar structure, skeleton, | | 1,284 | 330,917 | 950 | | 2,677 | 1,043,785 | 1,980 | Cells, Molecular Structures | | 6/4/2014 | | Pakorn Kanchanawong, National University of Singapore and National Heart, Lung, and Blood Institute, National Institutes of Health; and Clare Waterman, National Heart, Lung, and Blood Institute, National Institutes of Health | | | Abnormal, spiky fibroblast | Active | Photograph | | This is a fibroblast, a connective tissue cell that plays an important role in wound healing. Normal fibroblasts have smooth edges. In contrast, this spiky cell is missing a protein that is necessary for proper construction of the cell's skeleton. Its jagged shape makes it impossible for the cell to move normally. In addition to compromising wound healing, abnormal cell movement can lead to birth defects, faulty immune function, and other health problems. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Praveen Suraneni, Stowers Institute for Medical Research, Kansas City, Mo. | 1,950 | 239,631 | 1,350 | Dulles 2014 exhibit | Praveen Suraneni, Stowers Institute for Medical Research, Kansas | deformed cell, weird shaped cell | | 468 | 22,477 | 324 | | 975 | 62,766 | 675 | Cells, Injury and Illness, Molecular Structures | | 6/5/2014 | | Praveen Suraneni, Stowers Institute for Medical Research, Kansas City, Mo. | | | Birth of a yeast cell | Active | Photograph | | Yeast make bread, beer, and wine. And like us, yeast can reproduce sexually. A mother and father cell fuse and create one large cell that contains four offspring. When environmental conditions are favorable, the offspring are released, as shown here. Yeast are also a popular study subject for scientists. Research on yeast has yielded vast knowledge about basic cellular and molecular biology as well as about myriad human diseases, including colon cancer and various metabolic disorders. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Juergen Berger, Max Planck Institute for Developmental Biology, and Maria Langegger, Friedrich Miescher Laboratory of the Max Planck Society, Germany | 2,048 | 1,072,856 | 1,365 | Dulles 2014 exhibit | Juergen Berger, Max Planck Institute for Developmental Biology, | 3D, reproduction, sex | | 492 | 43,333 | 328 | | 1,025 | 147,347 | 683 | Cells, Genes | | 6/5/2014 | | Juergen Berger, Max Planck Institute for Developmental Biology, and Maria Langegger, Friedrich Miescher Laboratory of the Max Planck Society, Germany | | | Anthrax bacteria (green) being swallowed by an immune system cell | Active | Photograph | | Multiple anthrax bacteria (green) being enveloped by an immune system cell (purple). Anthrax bacteria live in soil and form dormant spores that can survive for decades. When animals eat or inhale these spores, the bacteria activate and rapidly increase in number. Today, a highly effective and widely used vaccine has made the disease uncommon in domesticated animals and rare in humans. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Camenzind G. Robinson, Sarah Guilman, and Arthur Friedlander, United States Army Medical Research Institute of Infectious Diseases | 4,016 | 1,253,955 | 5,400 | Dulles 2014 exhibit | Camenzind G. Robinson, Sarah Guilman and Arthur Friedlander, Uni | single-cell, human body | | 964 | 95,102 | 1,296 | | 2,008 | 271,552 | 2,700 | Cells, Injury and Illness | | 6/4/2014 | | Camenzind G. Robinson, Sarah Guilman, and Arthur Friedlander, United States Army Medical Research Institute of Infectious Diseases | | | An insect tracheal cell delivers air to muscles | Active | Photograph | | Insects like the fruit fly use an elaborate network of branching tubes called trachea (green) to transport oxygen throughout their bodies. Fruit flies have been used in biomedical research for more than 100 years and remain one of the most frequently studied model organisms. They have a large percentage of genes in common with us, including hundreds of genes that are associated with human diseases. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Jayan Nair and Maria Leptin, European Molecular Biology Laboratory, Heidelberg, Germany | 4,266 | 10,566,430 | 4,266 | Dulles 2014 exhibit | Jayan Nair and Maria Leptin, European Molecular Biology Laborato | structure, drosophila | | 1,023 | 183,692 | 1,023 | | 2,133 | 660,404 | 2,133 | Cells | | 6/5/2014 | | Jayan Nair and Maria Leptin, European Molecular Biology Laboratory, Heidelberg, Germany | | | Weblike sheath covering developing egg chambers in a giant grasshopper | Active | Photograph | | The lubber grasshopper, found throughout the southern United States, is frequently used in biology classes to teach students about the respiratory system of insects. Unlike mammals, which have red blood cells that carry oxygen throughout the body, insects have breathing tubes that carry air through their exoskeleton directly to where it's needed. This image shows the breathing tubes embedded in the weblike sheath cells that cover developing egg chambers. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Kevin Edwards, Johny Shajahan, and Doug Whitman, Illinois State University. | 4,500 | 2,675,117 | 3,000 | Dulles 2014 exhibit | Kevin Edwards, Johny Shajahan and Doug Whitman, Illinois State U | Structure, insect | | 1,080 | 226,176 | 720 | | 2,250 | 642,164 | 1,500 | Cells, Molecular Structures | | 6/5/2014 | | Kevin Edwards, Johny Shajahan, and Doug Whitman, Illinois State University. | | | Cells keep their shape with actin filaments and microtubules | Active | Photograph | | This image shows a normal fibroblast, a type of cell that is common in connective tissue and frequently studied in research labs. This cell has a healthy skeleton composed of actin (red) and microtubles (green). Actin fibers act like muscles to create tension and microtubules act like bones to withstand compression. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | James J. Faust and David G. Capco, Arizona State University | 4,500 | 1,853,769 | 3,000 | Dulles 2014 exhibit | James J. Faust and David G. Capco, Arizona State University | Structure, system | | 1,080 | 152,952 | 720 | | 2,250 | 450,995 | 1,500 | Cells, Molecular Structures | | 6/5/2014 | | James J. Faust and David G. Capco, Arizona State University | | | Hair cells: the sound-sensing cells in the ear | Active | Photograph | | These cells get their name from the hairlike structures that extend from them into the fluid-filled tube of the inner ear. When sound reaches the ear, the hairs bend and the cells convert this movement into signals that are relayed to the brain. When we pump up the music in our cars or join tens of thousands of cheering fans at a football stadium, the noise can make the hairs bend so far that they actually break, resulting in long-term hearing loss. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Henning Horn, Brian Burke, and Colin Stewart, Institute of Medical Biology, Agency for Science, Technology, and Research, Singapore | 3,600 | 1,771,658 | 3,600 | Dulles 2014 exhibit | Henning Horn, Brian Burke and Colin Stewart, Institute of Medica | Structure, deaf, deafness | | 864 | 146,428 | 864 | | 1,800 | 429,283 | 1,800 | Cells | | 6/5/2014 | | Henning Horn, Brian Burke, and Colin Stewart, Institute of Medical Biology, Agency for Science, Technology, and Research, Singapore | | | String-like Ebola virus peeling off an infected cell | Active | Photograph | | After multiplying inside a host cell, the stringlike Ebola virus is emerging to infect more cells. Ebola is a rare, often fatal disease that occurs primarily in tropical regions of sub-Saharan Africa. The virus is believed to spread to humans through contact with wild animals, especially fruit bats. It can be transmitted between one person and another through bodily fluids. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Heinz Feldmann, Peter Jahrling, Elizabeth Fischer and Anita Mora, National Institute of Allergy and Infectious Diseases, National Institutes of Health | 4,500 | 24,299,360 | 6,000 | Dulles 2014 exhibit | Heinz Feldmann, Peter Jahrling, Elizabeth Fischer and Anita Mora | | | 1,080 | 251,977 | 1,440 | | 2,250 | 735,573 | 3,000 | Cells | | 6/5/2014 | | Heinz Feldmann, Peter Jahrling, Elizabeth Fischer and Anita Mora, National Institute of Allergy and Infectious Diseases, National Institutes of Health | | | Anglerfish ovary cross-section | Active | Photograph | | This image captures the spiral-shaped ovary of an anglerfish in cross-section. Once matured, these eggs will be released in a gelatinous, floating mass. For some species of anglerfish, this egg mass can be up to 3 feet long and include nearly 200,000 eggs. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | James E. Hayden, The Wistar Institute, Philadelphia, Pa. | 2,250 | 20,281,532 | 3,000 | Dulles 2014 exhibit | James E. Hayden, The Wistar Institute, Philadelphia, Pa. | | | 540 | 162,813 | 720 | | 1,125 | 504,009 | 1,500 | Cells | | 6/5/2014 | | James E. Hayden, The Wistar Institute, Philadelphia, Pa. | | | Q fever bacteria in an infected cell | Active | Photograph | | This image shows Q fever bacteria (yellow), which infect cows, sheep, and goats around the world and can infect humans, as well. When caught early, Q fever can be cured with antibiotics. A small fraction of people can develop a more serious, chronic form of the disease. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Robert Heinzen, Elizabeth Fischer, and Anita Mora, National Institute of Allergy and Infectious Diseases, National Institutes of Health | 5,030 | 19,975,000 | 6,000 | Dulles 2014 exhibit | Robert Heinzen, Elizabeth Fischer and Anita Mora | | | 1,207 | 204,665 | 1,440 | | 2,515 | 670,709 | 3,000 | Cells | | 6/5/2014 | | Robert Heinzen, Elizabeth Fischer, and Anita Mora, National Institute of Allergy and Infectious Diseases, National Institutes of Health | | | Skin cancer cells from a mouse show how cells attach at contact points | Active | Photograph | | These skin cancer cells come from a mouse, an animal commonly used to study human diseases (including many types of cancer) and to test the effectiveness of drugs. The two cells shown here are connected by actin (green), a protein in the cellular skeleton. Although actin is required by many cells for normal movement, it also enables cancer cells to spread to other parts of the body. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Catherine and James Galbraith, Oregon Health & Science University, Knight Cancer Institute | 1,904 | 10,884,208 | 1,900 | Dulles 2014 exhibit | Catherine and James Galbraith, Oregon Health & Science Univers | | | 457 | 48,139 | 456 | | 1,904 | 1,091,008 | 1,900 | Cells | | 6/5/2014 | | Catherine Galbraith, Oregon Health & Science University, Knight Cancer Institute | | | Fibroblasts with nuclei in blue, energy factories in green and the actin cytoskeleton in red | Active | Photograph | | The cells shown here are fibroblasts, one of the most common cells in mammalian connective tissue. These particular cells were taken from a mouse embryo. Scientists used them to test the power of a new microscopy technique that offers vivid views of the inside of a cell. The DNA within the nucleus (blue), mitochondria (green), and actin filaments in the cellular skeleton (red) are clearly visible. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Dylan Burnette and Jennifer Lippincott-Schwartz, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health | 5,962 | 14,635,452 | 5,406 | Mouse embryonic fibroblast cells showing actin filament cytoskeleton (red), mitochondria (green), and DNA (blue) in Phalloidn Alexa-488, Mito-RFP, and DAPI was used to label the actin filaments, mitochondria and DNA, respectively. | Dylan Burnette and Jennifer Lippincott-Schwartz, NICHD | | | 1,430 | 274,253 | 1,296 | | 2,981 | 943,503 | 2,703 | Cells | | 6/5/2014 | Dulles 2014 exhibit | Dylan Burnette, NICHD | | | Mouth parts of a lone star tick | Active | Photograph | | The mouth parts of a lone star tick are revealed in vivid detail. The center of the mouth (yellow) is covered with many tiny barbs. These barbs keep the tick securely lodged inside the host while feeding. Lone star ticks are common in wooded areas throughout the central and eastern United States. They can carry disease-causing organisms, but these typically do not include the Lyme disease bacterium. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Igor Siwanowicz, Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA | 4,500 | 19,202,600 | 3,000 | Dulles 2014 exhibit | Igor Siwanowicz, Howard Hughes Medical Institute | | | 1,080 | 119,966 | 720 | | 4,500 | 2,127,618 | 3,000 | Cells | | 6/5/2014 | | Igor Siwanowicz, Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA | | | Bone cancer cell | Active | Photograph | | This image shows an osteosarcoma cell with DNA in blue, energy factories (mitochondria) in yellow, and actin filaments—part of the cellular skeleton—in purple. One of the few cancers that originate in the bones, osteosarcoma is rare, with about a thousand new cases diagnosed each year in the United States. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Dylan Burnette and Jennifer Lippincott-Schwartz, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health | 6,678 | 11,644,986 | 7,200 | Dulles 2014 exhibit | Dylan Burnette and Jennifer Lippincott-Schwartz, NICHD | | | 1,669 | 194,024 | 1,800 | | 3,339 | 759,586 | 3,600 | Cells | | 6/5/2014 | Dulles exhibit 2014 | Dylan Burnette and Jennifer Lippincott-Schwartz, NICHD | | | Larvae from the parasitic worm that causes schistosomiasis | Active | Photograph | | The parasitic worm that causes schistosomiasis hatches in water and grows up in a freshwater snail, as shown here. Once mature, the worm swims back into the water, where it can infect people through skin contact. Initially, an infected person might have a rash, itchy skin, or flu-like symptoms, but the real damage is done over time to internal organs. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Bo Wang and Phillip A. Newmark, University of Illinois at Urbana-Champaign, 2013 FASEB BioArt winner | 1,957 | 1,986,410 | 2,884 | Dulles 2014 exhibit | Bo Wang and Phillip A. Newmark, University of Illinois | | | 470 | 117,203 | 692 | | 1,957 | 1,986,410 | 2,884 | Cells | | 6/5/2014 | | Bo Wang and Phillip A. Newmark, University of Illinois at Urbana-Champaign, 2013 FASEB BioArt winner | | | Skin cancer cells (squamous cell carcinoma) | Active | Photograph | | This image shows the uncontrolled growth of cells in squamous cell carcinoma, the second most common form of skin cancer. If caught early, squamous cell carcinoma is usually not life-threatening. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Markus Schober and Elaine Fuchs, The Rockefeller University | 2,048 | 1,989,580 | 2,048 | Dulles exhibit 2014 Provided by PI: Skin squamous cell carcinoma, one of the most common human malignancies, can be recognized by its expression of antibodies against two keratins: Keratin 5 (red), which marks the undifferentiated cancer cells, and Keratin 6 (green) which marks the abnormal differentiating cells of the tumor. The nuclei are visualized in blue. | Markus Schober and Elaine Fuchs, The Rockefeller University | | | 512 | 52,551 | 512 | | 1,024 | 259,235 | 1,024 | Cells | | 6/5/2014 | | Markus Schober and Elaine Fuchs, The Rockefeller University | | | Three muscle fibers; the middle has a defect found in some neuromuscular diseases | Active | Photograph | | Of the three muscle fibers shown here, the one on the right and the one on the left are normal. The middle fiber is deficient a large protein called nebulin (blue). Nebulin plays a number of roles in the structure and function of muscles, and its absence is associated with certain neuromuscular disorders. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Christopher Pappas and Carol Gregorio, University of Arizona | 2,425 | 723,067 | 2,550 | Dulles exhibit 2014 | Christopher Pappas and Carol Gregorio, University of Arizona | | | 606 | 44,244 | 637 | | 1,212 | 172,099 | 1,274 | Cells | | 6/5/2014 | | Christopher Pappas and Carol Gregorio, University of Arizona | | | Dividing cells showing chromosomes and cell skeleton | Active | Photograph | | This pig cell is in the process of dividing. The chromosomes (purple) have already replicated and the duplicates are being pulled apart by fibers of the cell skeleton known as microtubules (green). Studies of cell division yield knowledge that is critical to advancing understanding of many human diseases, including cancer and birth defects. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Nasser Rusan, National Heart, Lung, and Blood Institute, National Institutes of Health | 2,195 | 1,256,079 | 2,640 | Dulles 2014 exhibit | Nasser Rusan, National Heart, Lung, and Blood Institute | | | 548 | 68,085 | 660 | | 1,097 | 285,955 | 1,320 | Cells, Genes | | 6/5/2014 | | Nasser Rusan, National Heart, Lung, and Blood Institute, National Institutes of Health | | | Developing nerve cells | Active | Photograph | | These developing mouse nerve cells have a nucleus (yellow) surrounded by a cell body, with long extensions called axons and thin branching structures called dendrites. Electrical signals travel from the axon of one cell to the dendrites of another.<Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Torsten Wittmann, University of California, San Francisco | 3,600 | 1,610,971 | 5,400 | Dulles exhibit 2014 | Torsten Wittmann, University of California, San Francisco | | | 900 | 93,688 | 1,350 | | 1,800 | 383,645 | 2,700 | Cells | | | Dulles exhibit 2014 | Torsten Wittmann, University of California, San Francisco | | | Cells lining the blood vessel walls | Active | Photograph | | The structure of the endothelium, the thin layer of cells that line our arteries and veins, is visible here. The endothelium is like a gatekeeper, controlling the movement of materials into and out of the bloodstream. Endothelial cells are held tightly together by specialized proteins that function like strong ropes (red) and others that act like cement (blue). <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Christopher V. Carman and Roberta Martinelli, Harvard Medical School. | 9,000 | 16,437,417 | 6,000 | Dulles 2014 exhibit | Christopher V. Carman and Roberta Martinelli | | | 2,250 | 953,615 | 1,500 | | 4,500 | 2,368,155 | 3,000 | Cells | | 6/5/2014 | | Christopher V. Carman and Roberta Martinelli, Harvard Medical School. | | | The eye uses many layers of nerve cells to convert light into sight | Active | Photograph | | This image captures the many layers of nerve cells in the retina. The top layer (green) is made up of cells called photoreceptors that convert light into electrical signals to relay to the brain. The two best-known types of photoreceptor cells are rod- and cone-shaped. Rods help us see under low-light conditions but can't help us distinguish colors. Cones don't function well in the dark but allow us to see vibrant colors in daylight. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Wei Li, National Eye Institute, National Institutes of Health | 3,992 | 2,625,316 | 5,760 | Dulles 2014 exhibit | Wei Li, National Eye Institute, National Institutes of Health | | | 998 | 151,402 | 1,440 | | 1,996 | 604,668 | 2,880 | Cells | | 6/5/2014 | | Wei Li, National Eye Institute, National Institutes of Health | | | Cells use bubble-like structures called vesicles to transport cargo | Active | Photograph | | Cells use bubble-like structures called vesicles (yellow) to import, transport, and export cargo and in cellular communication. A single cell may be filled with thousands of moving vesicles. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Tatyana Svitkina, University of Pennsylvania | 1,974 | 1,704,896 | 2,550 | Dulles exhibit 2014 | Tatyana Svitkina, University of Pennsylvania | | | 493 | 64,227 | 638 | | 987 | 374,652 | 1,275 | Cells | | 6/5/2014 | | Tatyana Svitkina, University of Pennsylvania | | | Purkinje cells are one of the main cell types in the brain | Active | Photograph | | This image captures Purkinje cells (red), one of the main types of nerve cell found in the brain. These cells have elaborate branching structures called dendrites that receive signals from other nerve cells. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Yinghua Ma and Timothy Vartanian, Cornell University, Ithaca, N.Y. | 4,448 | 4,307,321 | 6,000 | Dulles 2014 exhibit | Yinghua Ma and Timothy Vartanian, Cornell University | | | 1,068 | 363,899 | 1,440 | | 2,224 | 1,040,847 | 3,000 | Cells | | 6/5/2014 | | Yinghua Ma and Timothy Vartanian, Cornell University, Ithaca, N.Y. | | | Jellyfish, viewed with ZEISS Lightsheet Z.1 microscope | Active | Photograph | | Jellyfish are especially good models for studying the evolution of embryonic tissue layers. Despite being primitive, jellyfish have a nervous system (stained green here) and musculature (red). Cell nuclei are stained blue. By studying how tissues are distributed in this simple organism, scientists can learn about the evolution of the shapes and features of diverse animals. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Helena Parra, Pompeu Fabra University, Spain | 5,400 | 1,127,213 | 3,600 | Dulles 2014 exhibit | Helena Parra, Pompeu Fabra University, Spain | | | 1,350 | 738,561 | 900 | | 2,700 | 1,068,163 | 1,800 | Cells | | 6/5/2014 | | Helena Parra, Pompeu Fabra University, Spain | | | HIV, the AIDS virus, infecting a human cell | Active | Photograph | | This human T cell (blue) is under attack by HIV (yellow), the virus that causes AIDS. The virus specifically targets T cells, which play a critical role in the body's immune response against invaders like bacteria and viruses. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Seth Pincus, Elizabeth Fischer, and Austin Athman, National Institute of Allergy and Infectious Diseases, National Institutes of Health | 4,501 | 4,050,145 | 6,000 | Dulles 2014 exhibit | Seth Pincus, Elizabeth Fischer and Austin Athman | | | 1,080 | 273,920 | 1,440 | | 2,250 | 872,268 | 3,000 | Cells | | 6/5/2014 | | Seth Pincus, Elizabeth Fischer, and Austin Athman, National Institute of Allergy and Infectious Diseases, National Institutes of Health | | | Cerebellum: the brain's locomotion control center | Active | Photograph | | The cerebellum of a mouse is shown here in cross-section. The cerebellum is the brain's locomotion control center. Every time you shoot a basketball, tie your shoe or chop an onion, your cerebellum fires into action. Found at the base of your brain, the cerebellum is a single layer of tissue with deep folds like an accordion. People with damage to this region of the brain often have difficulty with balance, coordination and fine motor skills. For a higher magnification, see image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3371">3371</a>. <Br><Br>This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Thomas Deerinck, National Center for Microscopy and Imaging Research, University of California, San Diego | 4,100 | 13,928,409 | 6,150 | Dulles 2014 exhibit | Thomas Deerinck, NCMIR | | | 983 | 551,106 | 1,475 | | 2,050 | 2,522,707 | 3,075 | Cells | | 6/10/2014 | Dulles 2014 exhibit | Thomas Deerinck, National Center for Microscopy and Imaging Research, University of California, San Diego | | | A mammalian eye has approximately 70 different cell types | Active | Photograph | | The incredible complexity of a mammalian eye (in this case from a mouse) is captured here. Each color represents a different type of cell. In total, there are nearly 70 different cell types, including the retina's many rings and the peach-colored muscle cells clustered on the left. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Bryan William Jones and Robert E. Marc, University of Utah | 4,500 | 8,541,042 | 4,991 | Dulles 2014 exhibit A 161 MB version, with the dimensions of 26 by 23 inches at 300 dpi, is available in the Dulles exhibit folder in the OCPL shared drive. | Bryan William Jones and Robert E. Marc, University of Utah | | | 1,080 | 388,589 | 1,198 | | 2,250 | 1,503,501 | 2,496 | Cells | | 6/10/2014 | | Bryan William Jones and Robert E. Marc, University of Utah | | | Zebrafish embryo | Active | Photograph | | Just 22 hours after fertilization, this zebrafish embryo is already taking shape. By 36 hours, all of the major organs will have started to form. The zebrafish's rapid growth and see-through embryo make it ideal for scientists studying how organs develop. <br></br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Philipp Keller, Bill Lemon, Yinan Wan, and Kristin Branson, Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Va. | 5,760 | 3,300,737 | 4,210 | Dulles 2014 exhibit | Philipp Keller, Bill Lemon, Yinan Wan and Kristin Branson, etc. | development; developmental biology | | 1,382 | 264,610 | 1,010 | | 2,880 | 802,369 | 2,105 | Cells, Genes | | | | Philipp Keller, Bill Lemon, Yinan Wan, and Kristin Branson, Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Va. | | | Cells lining the trachea | Active | Photograph | | In this image, viewed with a ZEISS ORION NanoFab microscope, the community of cells lining a mouse airway is magnified more than 10,000 times. This collection of cells, known as the mucociliary escalator, is also found in humans. It is our first line of defense against inhaled bacteria, allergens, pollutants, and debris. Malfunctions in the system can cause or aggravate lung infections and conditions such as asthma and chronic obstructive pulmonary disease. The cells shown in gray secrete mucus, which traps inhaled particles. The colored cells sweep the mucus layer out of the lungs. <Br><Br> This image was part of the <em>Life: Magnified</em> exhibit that ran from June 3, 2014, to January 21, 2015, at Dulles International Airport. | | Eva Mutunga and Kate Klein, University of the District of Columbia and National Institute of Standards and Technology | 5,000 | 4,644,639 | 3,333 | Dulles 2014 exhibit | Eva Mutunga and Kate Klein | | | 1,252 | 840,339 | 835 | | 2,512 | 2,360,577 | 1,675 | Cells, Tools and Techniques | | 6/25/2014 | | Eva Mutunga and Kate Klein, University of the District of Columbia and National Institute of Standards and Technology | | | How a microtubule builds and deconstructs | Active | Video | | A microtubule, part of the cell's skeleton, builds and deconstructs. | | Eva Nogales lab, University of California, Berkeley | | 2,013,174 | | | | | | | | | | | | | Cells | | 8/8/2014 | | | | | Epithelial cells | Active | Photograph | | This image mostly shows normal cultured epithelial cells expressing green fluorescent protein targeted to the Golgi apparatus (yellow-green) and stained for actin (magenta) and DNA (cyan). The middle cell is an abnormal large multinucleated cell. All the cells in this image have a Golgi but not all are expressing the targeted recombinant fluorescent protein. | | Tom Deerinck, National Center for Microscopy and Imaging Research | 4,500 | 22,780,127 | 6,000 | | Tom Deerinck, National Center for Microscopy and Imaging Researc | | | 750 | 126,235 | 1,000 | | 1,500 | 794,799 | 2,000 | Cells | | | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Symmetrically and asymmetrically elongating cells | Active | Photograph | | Merged fluorescent images of symmetrically (left) or asymmetrically (right) elongating HeLa cells at the end of early anaphase (magenta) and late anaphase (green). Chromosomes and cortical actin are visualized by expressing mCherry-histone H2B and Lifeact-mCherry. Scale bar, 10µm. <a href=" http://www.ncbi.nlm.nih.gov/pubmed/23870127" target=_blank>See the PubMed abstract of this research</a>. | | Tomomi Kiyomitsu and Iain M. Cheeseman, Whitehead Institute for Biomedical Research | 253 | 24,382 | 660 | Dear Sharon - I am attaching some images from our recent paper that we hope might be useful for your purposes. These images are similar to the ones published in our paper (showing both symmetric and asymmetric membrane elongation during anaphase), but they are different than the ones that appear in the paper (and thus are free of any copyright restrictions). I am attaching these images as an Adobe Illustrator file, and as a TIFF file. If you can't open the Illustrator file, the legend that pertains to the images is: "Merged fluorescent images of symmetrically or asymmetrically elongating HeLa cells at the end of early anaphase (magenta) and late anaphase (green) . Chromosomes and cortical actin are visualized by expressing mCherry-histone H2B and Lifeact-mCherry. Scale bar, 10 µm." Please let us know if you need any additional information. Best regards, Iain | Tomomi Kiyomitsu and Iain M. Cheeseman | | | 118 | 45,235 | 308 | | 126 | 5,774 | 330 | Cells, Genes | | 6/27/2014 | | Tomomi Kiyomitsu and Iain M. Cheeseman, Whitehead Institute for Biomedical Research | | | Fruit fly ovary_2 | Active | Photograph | | A fruit fly ovary, shown here, contains as many as 20 eggs. Fruit flies are not merely tiny insects that buzz around overripe fruit--they are a venerable scientific tool. Research on the flies has shed light on many aspects of human biology, including biological rhythms, learning, memory and neurodegenerative diseases. Another reason fruit flies are so useful in a lab (and so successful in fruit bowls) is that they reproduce rapidly. About three generations can be studied in a single month. Related to image <a href="/Pages/DetailPage.aspx?imageID2=3607" target="_blank">3607</a>. | | Hogan Tang and Denise Montell, Johns Hopkins University and University of California, Santa Barbara | 415 | 378,493 | 670 | From: Denise Montell [ mailto:denise.montell@lifesci.ucsb.edu] Sent: Tuesday, March 25, 2014 3:41 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: permission to use fruit fly ovary images in NIGMS publications? Hi Alisa, I am happy that you like the images and I am happy to have them used and displayed as broadly as possible. I do think that science can be extremely beautiful. The blue one received an honorable mention in the Olympus Bioscapes competition. There is no copyright problem at all as I have retained the copyright when submitting them. I believe that Nikon selected one of them to hang in their headquarters but again I retain the copyright. So use them as much as you like. Please let me know what you end up using them for, just out of curiosity. All the best, Denise -------------------------------------------------------- Denise Montell Duggan Professor Molecular, Cellular and Developmental Biology University of California Santa Barbara, CA denise.montell@lifesci.ucsb.edu (805)893-3633 https://labs.mcdb.ucsb.edu/montell/denise/ | Denise Montell, University of California, Santa Barbara | development; developmental biology | | 99 | 39,820 | 161 | | 207 | 62,095 | 335 | Cells, Genes | | | | Denise Montell, University of California, Santa Barbara | | | Electrostatic map of human spermine synthase | Active | Illustration | | From PDB entry 3c6k, Crystal structure of human spermine synthase in complex with spermidine and 5-methylthioadenosine. | | Emil Alexov, Clemson University | 3,983 | 3,022,261 | 3,983 | | Emil Alexov, Clemson University | | | 956 | 262,311 | 956 | | 1,992 | 762,377 | 1,992 | Molecular Structures, Tools and Techniques | | 9/4/2014 | NIGMS minibrochure | Emil Alexov, Clemson University | | | Ribonuclease P structure | Active | Illustration | | Ribbon diagram showing the structure of Ribonuclease P with tRNA. | | | 975 | 478,480 | 1,327 | | | | | 233 | 35,152 | 318 | | 487 | 73,314 | 663 | Molecular Structures | | 9/4/2014 | 2014 NIGMS minibrochure | PDB entry 3Q1Q, molecular modeling by Fred Friedman, NIGMS | | | Mitochondria from rat heart muscle cell | Active | Photograph | | These mitochondria (red) are from the heart muscle cell of a rat. Mitochondria have an inner membrane that folds in many places (and that appears here as striations). This folding vastly increases the surface area for energy production. Nearly all our cells have mitochondria. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3664" target="_blank">3664</a>. | | Thomas Deerinck, National Center for Microscopy and Imaging Research | 3,574 | 1,943,962 | 3,000 | | | | | 857 | 133,059 | 719 | | 1,787 | 517,968 | 1,500 | Cells | | 9/18/2014 | ILS article on 9/24/2014 | National Center for Microscopy and Imaging Research | | | Mitochondria from rat heart muscle cell_2 | Active | Photograph | | These mitochondria (brown) are from the heart muscle cell of a rat. Mitochondria have an inner membrane that folds in many places (and that appears here as striations). This folding vastly increases the surface area for energy production. Nearly all our cells have mitochondria. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3661" target="_blank">3661</a>. | | Thomas Deerinck, National Center for Microscopy and Imaging Research | 3,574 | 1,921,453 | 3,000 | | | | | 857 | 136,206 | 719 | | 1,787 | 530,396 | 1,500 | Cells | | 11/12/2014 | | National Center for Microscopy and Imaging Research | | | Mitochondrion from insect flight muscle | Active | Illustration | | This is a tomographic reconstruction of a mitochondrion from an insect flight muscle. Mitochondria are cellular compartments that are best known as the powerhouses that convert energy from the food into energy that runs a range of biological processes. Nearly all our cells have mitochondria. | | Guy Perkins, National Center for Microscopy and Imaging Research | 1,278 | 289,099 | 1,405 | | | | | 307 | 50,266 | 337 | | 639 | 99,453 | 703 | Cells | | 9/18/2014 | | National Center for Microscopy and Imaging Research | | | NCMIR kidney-1 | Active | Photograph | | Stained kidney tissue. The kidney is an essential organ responsible for disposing wastes from the body and for maintaining healthy ion levels in the blood. It also secretes two hormones, erythropoietin (EPO) and calcitriol (a derivative of vitamin D), into the blood. It works like a purifier by pulling break-down products of metabolism, such as urea and ammonium, from the blood stream for excretion in urine. Related to image <a href="/Pages/DetailPage.aspx?imageID2=3725">3725</a>. | | Tom Deerinck and Mark Ellisman, National Center for Microscopy and Imaging Research | 720 | 432,545 | 960 | | Mark Ellisman, NCMIR | | | 172 | 22,100 | 230 | | 360 | 77,898 | 480 | Cells | | | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | DNA and actin in cultured fibroblast cells | Active | Photograph | | DNA (blue) and actin (red) in cultured fibroblast cells. | | Tom Deerinck and Mark Ellisman, National Center for Microscopy and Imaging Research | 360 | 77,429 | 480 | | Mark Ellisman, NCMIR | | | 172 | 20,270 | 230 | | 360 | 77,429 | 480 | Cells, Genes | | 9/1/2014 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | STORM image of axonal cytoskeleton | Active | Photograph | | This image shows the long, branched structures (axons) of nerve cells. Running horizontally across the middle of the photo is an axon wrapped in rings made of actin protein (green), which plays important roles in nerve cells. The image was captured with a powerful microscopy technique that allows scientists to see single molecules in living cells in real time. The technique is called stochastic optical reconstruction microscopy (STORM). It is based on technology so revolutionary that its developers earned the 2014 Nobel Prize in Chemistry. More information about this image can be found in: K. Xu, G. Zhong, X. Zhuang. <a href=" http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3815867/" target="_blank">Actin, spectrin and associated proteins form a periodic cytoskeleton structure in axons</a>. Science 339, 452-456 (2013). | | Xiaowei Zhuang Laboratory, Howard Hughes Medical Institute, Harvard University | 3,300 | 1,853,809 | 2,550 | Another option is attached. It's from Xiaowei Zhuang, and we have permission to use it. Caption info: STORM_6: STORM image of a novel periodic, actin-spectrin based cytoskeleton in axons. The image shows the STORM image of actin in neurites. The neurite in the middle is an axon, which shows a periodic distribution of actin. Actin filaments and spectrin tetramers interconnect to form a periodic lattice structure that wraps around the circumference of the axon underneath the axonal membrane. [credit the Xiaowei Zhuang laboratory, Howard Hughes Medical Institute, Harvard University] | Xiaowei Zhuang | | | 791 | 122,950 | 611 | | 1,650 | 425,476 | 1,275 | Cells, Tools and Techniques | | 11/18/2014 | Gov Delivery Dec 2014 | Xiaowei Zhuang Laboratory, Howard Hughes Medical Institute, Harvard University | | | Human skeletal muscle | Active | Photograph | | Cross section of human skeletal muscle. Image taken with a confocal fluorescent light microscope. | | Tom Deerinck and Mark Ellisman, National Center for Microscopy and Imaging Research | 720 | 290,597 | 960 | | Mark Ellisman, NCMIR | | | 172 | 15,867 | 230 | | 360 | 50,493 | 480 | Cells, Tools and Techniques | | 11/13/2014 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Hippocampal neuron from rodent brain | Active | Photograph | | Hippocampal neuron from rodent brain with dendrites shown in blue. The hundreds of tiny magenta, green and white dots are the dendritic spines of excitatory synapses. | | Barbara Calabrese, UC San Diego | 449 | 221,472 | 600 | From: Shelley Halpain [shalpain@ucsd.edu] Sent: Wednesday, July 01, 2015 3:29 PM To: Beans, Carolyn (NIH/NIGMS) [C]; Barbara Calabrese Subject: Re: Requesting Permission for Image Use and I should add that we could provide you a better quality version of image #1 if you wish; the red structures appear to be rather too dim, at least in the version you attached to send to us A high quality version of this image (#1) was recently used in tandem press releases from UCSD and Weill-Cornell Medical School announcing a paper from my lab Shelley Halpain, Ph.D. [rest of the email footer deleted] On 6/30/2015 12:19 PM, Beans, Carolyn wrote: Thank you! And, of course, we?d be happy to correct the error. [stuff deleted] Best, Carolyn [footer deleted] From: Halpain, Shelley [ mailto:shalpain@ucsd.edu] Sent: Tuesday, June 30, 2015 2:46 PM To: Beans, Carolyn (NIH/NIGMS) [C] Cc: bcalabrese@ucsd.edu Subject: Re: Requesting Permission for Image Use Yes, of course, but would you kindly permit us to correct the figure caption on one of them, which is slightly in error. On Jun 30, 2015, at 7:41 AM, Beans, Carolyn wrote: Dear Drs. Halpain and Calabrese, Last summer we covered your research in an article in our Biomedical Beat Blog. Thank you again for working with us to highlight your work. I?m writing now to request permission to include the image from this article, as well as the other two images from the UCSD press release, in our collection of research-related images. Images in this gallery are made available for educational, news media, or research purposes, provided that users credit the source of the image, i.e., you. Would you be willing to let us use the images in this way? We already have high resolution copies that you kindly provided to our writer, Sharon Reynolds, last year. Best, Carolyn Beans | | | | 112 | 35,005 | 150 | | 224 | 58,214 | 300 | Cells | | 10/7/2015 | | Shelley Halpain, UC San Diego | | | Hippocampal neuron in culture | Active | Photograph | | | | Shelley Halpain, UC San Diego | 1,100 | 215,439 | 1,400 | From: Shelley Halpain [shalpain@ucsd.edu] Sent: Wednesday, July 01, 2015 3:29 PM To: Beans, Carolyn (NIH/NIGMS) [C]; Barbara Calabrese Subject: Re: Requesting Permission for Image Use and I should add that we could provide you a better quality version of image #1 if you wish; the red structures appear to be rather too dim, at least in the version you attached to send to us A high quality version of this image (#1) was recently used in tandem press releases from UCSD and Weill-Cornell Medical School announcing a paper from my lab Shelley Halpain, Ph.D. [rest of the email footer deleted] On 6/30/2015 12:19 PM, Beans, Carolyn wrote: Thank you! And, of course, we?d be happy to correct the error. [stuff deleted] Best, Carolyn [footer deleted] From: Halpain, Shelley [ mailto:shalpain@ucsd.edu] Sent: Tuesday, June 30, 2015 2:46 PM To: Beans, Carolyn (NIH/NIGMS) [C] Cc: bcalabrese@ucsd.edu Subject: Re: Requesting Permission for Image Use Yes, of course, but would you kindly permit us to correct the figure caption on one of them, which is slightly in error. On Jun 30, 2015, at 7:41 AM, Beans, Carolyn wrote: Dear Drs. Halpain and Calabrese, Last summer we covered your research in an article in our Biomedical Beat Blog. Thank you again for working with us to highlight your work. I?m writing now to request permission to include the image from this article, as well as the other two images from the UCSD press release, in our collection of research-related images. Images in this gallery are made available for educational, news media, or research purposes, provided that users credit the source of the image, i.e., you. Would you be willing to let us use the images in this way? We already have high resolution copies that you kindly provided to our writer, Sharon Reynolds, last year. Best, Carolyn Beans | | | | 264 | 23,122 | 336 | | 550 | 57,232 | 700 | Cells, Genes | | 10/7/2015 | | Shelley Halpain, UC San Diego | | | Brain cells in the hippocampus | Active | Photograph | | Hippocampal cells in culture with a neuron in green, showing hundreds of the small protrusions known as dendritic spines. The dendrites of other neurons are labeled in blue, and adjacent glial cells are shown in red. | | Barbara Calabrese, UC San Diego | 2,274 | 397,091 | 3,000 | ________________________________________ From: Shelley Halpain [shalpain@ucsd.edu] Sent: Wednesday, July 01, 2015 3:29 PM To: Beans, Carolyn (NIH/NIGMS) [C]; Barbara Calabrese Subject: Re: Requesting Permission for Image Use and I should add that we could provide you a better quality version of image #1 if you wish; the red structures appear to be rather too dim, at least in the version you attached to send to us A high quality version of this image (#1) was recently used in tandem press releases from UCSD and Weill-Cornell Medical School announcing a paper from my lab Shelley Halpain, Ph.D. [rest of the email footer deleted] On 6/30/2015 12:19 PM, Beans, Carolyn wrote: Thank you! And, of course, we?d be happy to correct the error. [stuff deleted] Best, Carolyn [footer deleted] From: Halpain, Shelley [ mailto:shalpain@ucsd.edu] Sent: Tuesday, June 30, 2015 2:46 PM To: Beans, Carolyn (NIH/NIGMS) [C] Cc: bcalabrese@ucsd.edu Subject: Re: Requesting Permission for Image Use Yes, of course, but would you kindly permit us to correct the figure caption on one of them, which is slightly in error. On Jun 30, 2015, at 7:41 AM, Beans, Carolyn wrote: Dear Drs. Halpain and Calabrese, Last summer we covered your research in an article in our Biomedical Beat Blog. Thank you again for working with us to highlight your work. I?m writing now to request permission to include the image from this article, as well as the other two images from the UCSD press release, in our collection of research-related images. Images in this gallery are made available for educational, news media, or research purposes, provided that users credit the source of the image, i.e., you. Would you be willing to let us use the images in this way? We already have high resolution copies that you kindly provided to our writer, Sharon Reynolds, last year. Best, Carolyn Beans | | | | 545 | 96,836 | 719 | | 1,137 | 259,997 | 1,500 | Cells | | | | Shelley Halpain, UC San Diego | | | Computer sketch of bird-and-flower DNA origami | Active | Illustration | | A computer-generated sketch of a DNA origami folded into a flower-and-bird structure. Image is featured on Biomedical Beat blog post <a href=" http://biobeat.nigms.nih.gov/2015/10/cool-image-dna-origami" target=_blank>Cool Image: DNA Origami</a>. See also related <a href="/Pages/DetailPage.aspx?imageID2=3690">image 3690</a>. | | Hao Yan, Arizona State University | 385 | 150,661 | 515 | | | | | 190 | 42,300 | 255 | | 385 | 150,661 | 515 | Genes, Molecular Structures, Tools and Techniques | | | | Hao Yan, Arizona State University | | | Microscopy image of bird-and-flower DNA origami | Active | Photograph | | | | Hao Yan, Arizona State University | 373 | 315,104 | 515 | Obtained permission for public use from researcher: Hao Yan [Hao.Yan@asu.edu] To: Spiering, Martin (NIH/NIGMS) [C] Wednesday, October 07, 2015 12:36 PM Yes, go ahead. Hao Spiering, Martin (NIH/NIGMS) [C] To: Hao Yan ? [Hao.Yan@asu.edu]? Cc: Spiering, Martin ? [mspiering@csrincorporated.com]? Wednesday, October 07, 2015 12:34 PM Dear Hao, Thank you again for your contributions. I just have one follow-up question; we would like to request permission to include the images from this article in our collection of research-related images. Images in this gallery are made available for educational, news media or research purposes, provided that users credit the source of the image, i.e., you. Would you be willing to let us use the images in this way? Best regards, Martin | Hao Yan, Arizona State University | | | 223 | 87,733 | 308 | | 373 | 315,104 | 515 | Genes, Molecular Structures, Tools and Techniques | | 10/7/2015 | | Hao Yan, Arizona State University | | | A Bacillus subtilis biofilm grown in a Petri dish | Active | Photograph | | Bacterial biofilms are tightly knit communities of bacterial cells growing on, for example, solid surfaces, such as in water pipes or on teeth. Here, cells of the bacterium Bacillus subtilis have formed a biofilm in a laboratory culture. Researchers have discovered that the bacterial cells in a biofilm communicate with each other through electrical signals via specialized potassium ion channels to share resources, such as nutrients, with each other. This insight may help scientists to improve sanitation systems to prevent biofilms, which often resist common treatments, from forming and to develop better medicines to combat bacterial infections. See the Biomedical Beat blog post <a href=" http://biobeat.nigms.nih.gov/2015/12/bacterial-biofilms-a-charged-environment">Bacterial Biofilms: A Charged Environment</a> for more information. | | Gürol Süel, UCSD | 1,200 | 474,160 | 1,600 | The researcher granted permission for public use of the image: Dear Martin, Thanks for the link, enjoyed reading your article. I am also hereby granting permission for the use of the image. Cheers Gurol Dear Gurol, I just wanted to let you know that the article featuring your work has just posted on the NIGMS website (see http://biobeat.nigms.nih.gov/2015/12/bacterial-biofilms-a-charged-environment/). Thank you again for your contributions. I just have one follow-up question; we would like to request permission to include the image from this article in our collection of research-related images. Images in this gallery are made available for educational, news media or research purposes, provided that users credit the source of the image, i.e., you. Would you be willing to let us use the images in this way? Best regards, Martin Martin J Spiering, PhD, ELS Science Writer & Editor (contractor) Office of Communications & Public Liaison NIGMS | Gürol Süel, UCSD | | | 300 | 51,130 | 400 | | 600 | 198,756 | 800 | Cells, Chemistry, Biochemistry, and Pharmacology | | 12/1/2015 | | Gürol Süel, UCSD | | | CRISPR illustration | Active | Illustration | | | | National Institute of General Medical Sciences. | | 400,189 | | created for NIGMS by Crabtree & Co. Jennifer Doudna OK'ed it | | | | | | | | | | | Genes, Tools and Techniques | | 12/16/2015 | | National Institute of General Medical Sciences. | | | Cas4 nuclease protein structure | Active | Illustration | | This wreath represents the molecular structure of a protein, Cas4, which is part of a system, known as CRISPR, that bacteria use to protect themselves against viral invaders. The green ribbons show the protein's structure, and the red balls show the location of iron and sulfur molecules important for the protein's function. Scientists harnessed Cas9, a different protein in the bacterial CRISPR system, to create a gene-editing tool known as CRISPR-Cas9. Using this tool, researchers are able to study a range of cellular processes and human diseases more easily, cheaply and precisely. In December, 2015, Science magazine recognized the CRISPR-Cas9 gene-editing tool as the "breakthrough of the year." Read more about Cas4 in the December 2015 Biomedical Beat post <a href=" https://biobeat.nigms.nih.gov/2015/12/cool-images-a-holiday-themed-collection/">A Holiday-Themed Image Collection</a>. | | molecular model by Fred Dyda, National Institute of Diabetes and Digestive and Kidney Diseases, PDB entry number 4ic1 | 2,226 | 2,225,641 | 2,968 | | see PDB entry 4ic1 | | | 551 | 147,523 | 735 | | 1,104 | 385,670 | 1,472 | Chemistry, Biochemistry, and Pharmacology, Genes, Molecular Structures | | | | Fred Dyda, NIDDK | | | Fluorescent microscopy of kidney tissue | Active | Photograph | | Serum albumin (SA) is the most abundant protein in the blood plasma of mammals. SA has a characteristic heart-shape structure and is a highly versatile protein. It helps maintain normal water levels in our tissues and carries almost half of all calcium ions in human blood. SA also transports some hormones, nutrients and metals throughout the bloodstream. Despite being very similar to our own SA, those from other animals can cause some mild allergies in people. Therefore, some scientists study SAs from humans and other mammals to learn more about what subtle structural or other differences cause immune responses in the body. <Br><Br>Related to entries <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3725"> 3725</a> and <a href=" https://images.nigms.nih.gov/Pages/DetailPage.aspx?imageID2=3675">3675</a>. | | Tom Deerinck and Mark Ellisman, NCMIR | 14,400 | 293,865,513 | 21,600 | | Mark Ellisman, NCMIR | | | 3,600 | 3,099,077 | 5,400 | | 7,200 | 17,698,419 | 10,800 | Cells | | | | Tom Deerinck , National Center for Microscopy and Imaging Research | | | Snowflake DNA origami | Active | Photograph | | An atomic force microscopy image shows DNA folded into an intricate, computer-designed structure. The image is featured on Biomedical Beat blog post Cool Images: A Holiday-Themed Collection. For more background on DNA origami, see <a href=" http://biobeat.nigms.nih.gov/2015/10/cool-image-dna-origami" target=_blank>Cool Image: DNA Origami</a>. See also related <a href="/Pages/DetailPage.aspx?imageID2=3690">image 3690</a>. | | Hao Yan, Arizona State University | 284 | 82,422 | 308 | Public use permission was obtained from image owner: Hao Yan [Hao.Yan@asu.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Hao Yan [Hao.Yan@asu.edu]; Carlson, Emily (NIH/NIGMS) [E] Yes, please feel free to use this image. Hao Sent from my iPhone Spiering, Martin (NIH/NIGMS) [C] Monday, December 21, 2015 1:32 PM Dear Hao, As you may recall, a little while ago we've exchanged several e-mails about a post featuring your DNA origami work on our Biomedical Beat blog on the NIGMS website. Thank you again for your valuable contribution. We're in the process of preparing another post, which has various holiday-theme images, and we would like to use your image of a snowflake (see attached) in this post. Would you give us permission to use the image in this way? Also, if so, would you also give us permission to add this image for educational use to our Image Gallery ( https://images.nigms.nih.gov/)--images featured there can be used by others, provided that they credit you. Would this be okay? Many thanks, Martin Martin J Spiering, PhD, ELS Science Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Hao Yan, Arizona State University | | | 284 | 82,422 | 308 | | 284 | 82,422 | 308 | Genes, Molecular Structures, Tools and Techniques | | 12/22/2015 | | Hao Yan, Arizona State University | | | Fluorescent microscopy of kidney tissue--close-up | Active | Photograph | | This photograph of kidney tissue, taken using fluorescent light microscopy, shows a close-up view of part of image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3723">3723</a>. Kidneys filter the blood, removing waste and excessive fluid, which is excreted in urine. The filtration system is made up of components that include glomeruli (for example, the round structure taking up much of the image's center is a glomerulus) and tubules (seen in cross-section here with their inner lining stained green). Related to image <a href="/Pages/DetailPage.aspx?imageID2=3675">3675</a> . | | Tom Deerinck and Mark Ellisman, NCMIR | 285 | 31,720 | 324 | | | | | 271 | 188,576 | 308 | | 143 | 21,619 | 162 | Cells | | | Biomedical Beat holiday image feature, December 22, 2015 | Tom Deerinck , National Center for Microscopy and Imaging Research | | | Quorum-sensing inhibitor limits bacterial growth | Active | Video | | To simulate the consequences of disrupting bacterial cell-to-cell communication, called quorum sensing, in the crypts (small chambers within the colon), the researchers experimented with an inhibitor molecule (i.e., antagonist) to turn off quorum sensing in methicillin-resistant Staphylococcus aureus (MRSA), an antibiotic-resistant strain of bacteria that often causes human infections. In this experiment, a medium promoting bacterial growth flows through experimental chambers mimicking the colon environment. The chambers on the right contained no antagonist. In the left chambers, after being added to the flowing medium, the quorum-sensing-inhibiting molecules quickly spread throughout the crevices, inactivating quorum sensing and reducing colonization. These results suggest a potential strategy for addressing MRSA virulence via inhibitors of bacterial communication. You can read more about this research <a href=" https://www.princeton.edu/main/news/archive/S45/26/21S91/index.xml?section=topstories/">here</a>. | | Minyoung Kevin Kim and Bonnie Bassler, Princeton University | | 876,950 | | Researchers gave permission for public use: Kevin Kim [myk@Princeton.EDU] Friday, January 22, 2016 11:30 AM hello Martin, It's our pleasure to share it! I just attached video here in this email. Please let us know if you have any trouble to see the video! Best, Kevin [Available] Spiering, Martin (NIH/NIGMS) [C] [Reply All] Sent Items Friday, January 22, 2016 11:24 AM Hello Kevin, Many thanks for your quick response. The file we would like to have is the one for the video posted here: https://vimeo.com/151525538 If the file isn't too huge, perhaps you can try to zip it or otherwise send it via your preferred cloud service? Please let me know if you have any questions or need to use a different email route. Many thanks! Martin [Unknown] Kevin Kim [myk@Princeton.EDU] [Reply] [Reply All] [Forward] Actions To: [Available] Spiering, Martin (NIH/NIGMS) [C] Cc: [Unknown] Bassler, Bonnie L. ? [bbassler@Princeton.EDU]??; [Unknown] Howard A. Stone ? [hastone@Princeton.EDU]? Friday, January 22, 2016 11:16 AM You replied on 1/22/2016 11:24 AM. hello Martin, I am a grad student from Bassler and Stone labs. We are happy to share the videos with you! Could you please tell us 1) which videos you need, and 2) dropbox email address or any other sharing methods? Best regards, Kevin [Unknown] Bassler, Bonnie L. [bbassler@Princeton.EDU] [Reply] [Reply All] [Forward] Actions To: [Available] Spiering, Martin (NIH/NIGMS) [C] Inbox Tuesday, January 19, 2016 1:18 PM You replied on 1/22/2016 10:45 AM. Dear Martin, Sure! Delighted. Thanks, Bonnie From: <Spiering>, "Martin [C] (NIH/NIGMS)" < martin.spiering@nih.gov> Date: Tuesday, January 19, 2016 at 11:50 AM To: Bonnie Bassler < bbassler@exchange.princeton.edu> Subject: Permission for adding one of your videos to NIGMS website | Bonnie Bassler, Princeton University | | | | | | | | | | Cells, Chemistry, Biochemistry, and Pharmacology | | 1/22/2016 | | Minyoung Kevin Kim and Bonnie Bassler, Princeton University | | | Zinc levels in a plant leaf | Active | Photograph | | | | Suzana Car and Mary Lou Guerinot, Dartmouth College | 1,013 | 874,604 | 885 | Researchers okayed public use of the image: Suzana Car [Suzana.Car.GR@dartmouth.edu] Dear Dr. Spiering, Thank you for your interest in our image! I have attached the highest resolution version that I currently have. Best regards, -Suzana Mary Lou Guerinot [Mary.Lou.Guerinot@dartmouth.edu] Thursday, January 21, 2016 1:25 PM Hi Martin, I have asked my student Suzana Car (who took the image) to send you a high resolution version. Thank you, Mary Lou Guerinot From: "Spiering, Martin (NIH/NIGMS) [C]" < martin.spiering@nih.gov> Subject: Arabidopsis leaf image Date: January 21, 2016 at 1:07:43 PM EST To: " mary.lou.guerinot@dartmouth.edu" < mary.lou.guerinot@dartmouth.edu> Cc: "Machalek, Alisa Zapp (NIH/NIGMS) [E]" < MachaleA@nigms.nih.gov> Dear Dr. Guerinot, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we would like to include your award-winning photo of zinc distribution in the Arabidopsis leaf ( https://www.faseb.org/Resources-for-the-Public/Scientific-Contests/BioArt/2015-BioArt-Winners.aspx), which was also featured in Dr. Francis Collins' recent blog post (at http://directorsblog.nih.gov/2016/01/21/snapshots-of-life-from-arabidopsis-to-zinc/), on the NIGMS website (at https://images.nigms.nih.gov/). Images in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for use, provided that any u | Mary Lou Guerinot, Dartmouth College | | | 243 | 53,372 | 212 | | 507 | 93,244 | 443 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | | | Suzana Car, Dartmouth College | | | A molecular switch strips transcription factor from DNA | Active | Video | | In this video, Rice University scientists used molecular modeling with a mathematical algorithm called AWSEM (for associative memory, water-mediated, structure and energy model) and structural data to analyze how a transcription factor called nuclear factor kappa B (NFkB) is removed from DNA to stop gene activation. AWSEM uses the interacting energies of their components to predict how proteins fold. At the start, the NFkB dimer (green and yellow, in the center) grips DNA (red, to the left), which activates the transcription of genes. IkB (blue, to the right), an inhibitor protein, stops transcription when it binds to NFkB and forces the dimer to twist and release its hold on DNA. The yellow domain at the bottom of IkB is the PEST domain, which binds first to NFkB. For more details about this mechanism called molecular stripping, see <a href=" http://news.rice.edu/2015/12/21/a-new-twist-in-genetic-switches-2/">here</a>. | | Davit Potoyan and Peter Wolynes | | 16,427,537 | | Researchers gave permission for public use: David Potoyan [david.potoyan@gmail.com] Tuesday, January 26, 2016 6:41 PM Dear Martin, Thank you for taking interest in our research. I am a postdoctoral associate in Peter's lab who made the animation. Please find the video file attached to this email. Also feel free to ask any questions that you might have or if you would like other media files. Best, -Davit Peter Wolynes [pwolynes@rice.edu] To: Spiering, Martin (NIH/NIGMS) [C]?; David Potoyan ? [potoyan@rice.edu]??; pwolynes@rice.edu Monday, January 25, 2016 2:04 PM Thanks for your kind words ! Putting it together was quite interesting because it is not just a straight "morph" but uses structures sampled properly by WHAM.It would be great if you could use our animation. My postdoc Davit Potoyan has the files. I am connecting him with you so he can send the animation. Best regards, Peter On 1/25/16 11:41 AM, Spiering, Martin (NIH/NIGMS) [C] wrote: Dear Dr. Wolynes, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we would like to include your striking and insightful animation of the NFkappaB-DNA-IkappaB switch ( https://www.youtube.com/watch?v=_ADwUClCzMA) on the NIGMS website (at https://images.nigms.nih.gov/). Images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would let us feature your video on the NIGMS Image Gallery in this way? If so, could you please send me a file containing this animation? Thank you, Martin J Spiering, PhD, ELS Science Writer& Editor (contractor) OCPL, National Institutes of Health/NIGMS | Peter Wolynes | | | | | | | | | | Molecular Structures, Tools and Techniques | | 1/27/2016 | | Davit Potoyan and Peter Wolynes | | | A molecular interaction network in yeast 1 | Active | Illustration | | The image visualizes a part of the yeast molecular interaction network. The lines in the network represent connections among genes (shown as little dots) and different-colored networks indicate subnetworks, for instance, those in specific locations or pathways in the cell. Researchers use gene or protein expression data to build these networks; the network shown here was visualized with a program called <a href=" http://cytoscape.org/">Cytoscape</a>. By following changes in the architectures of these networks in response to altered environmental conditions, scientists can home in on those genes that become central "hubs" (highly connected genes), for example, when a cell encounters stress. They can then further investigate the precise role of these genes to uncover how a cell's molecular machinery deals with stress or other factors. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3732">3732</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3733">3733</a>. | | Keiichiro Ono and Trey Ideker, UCSD | 3,152 | 5,882,480 | 3,007 | | Trey Ideker, UCSD | | | 785 | 833,341 | 750 | | 1,575 | 2,676,647 | 1,503 | Genes, Tools and Techniques | | 1/28/2016 | | Keiichiro Ono, UCSD | | | A molecular interaction network in yeast 3 | Active | Illustration | | The image visualizes a part of the yeast molecular interaction network. The lines in the network represent connections among genes (shown as little dots) and different-colored networks indicate subnetworks, for instance, those in specific locations or pathways in the cell. Researchers use gene or protein expression data to build these networks; the network shown here was visualized with a program called <a href=" http://cytoscape.org/">Cytoscape</a>. By following changes in the architectures of these networks in response to altered environmental conditions, scientists can home in on those genes that become central "hubs" (highly connected genes), for example, when a cell encounters stress. They can then further investigate the precise role of these genes to uncover how a cell's molecular machinery deals with stress or other factors. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3730">3730</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3732">3732</a>. | | Keiichiro Ono and Trey Ideker, UCSD | 2,890 | 5,888,772 | 3,942 | | Trey Ideker, UCSD | | | 694 | 622,901 | 946 | | 1,445 | 2,320,355 | 1,971 | Genes, Tools and Techniques | | 1/28/2016 | | Keiichiro Ono, UCSD | | | A molecular interaction network in yeast 2 | Active | Illustration | | The image visualizes a part of the yeast molecular interaction network. The lines in the network represent connections among genes (shown as little dots) and different-colored networks indicate subnetworks, for instance, those in specific locations or pathways in the cell. Researchers use gene or protein expression data to build these networks; the network shown here was visualized with a program called <a href=" http://cytoscape.org/">Cytoscape</a>. By following changes in the architectures of these networks in response to altered environmental conditions, scientists can home in on those genes that become central "hubs" (highly connected genes), for example, when a cell encounters stress. They can then further investigate the precise role of these genes to uncover how a cell's molecular machinery deals with stress or other factors. Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3730">3730</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3733">3733</a>. | | Keiichiro Ono and Trey Ideker, UCSD | 3,208 | 4,612,552 | 3,806 | | Trey Ideker, UCSD | | | 770 | 543,347 | 913 | | 1,604 | 1,959,032 | 1,903 | Genes, Tools and Techniques | | 1/28/2016 | | Keiichiro Ono, UCSD | | | Scanning electron microscopy of collagen fibers | Active | Photograph | | This image shows collagen, a fibrous protein that's the main component of the extracellular matrix (ECM). Collagen is a strong, ropelike molecule that forms stretch-resistant fibers. The most abundant protein in our bodies, collagen accounts for about a quarter of our total protein mass. Among its many functions is giving strength to our tendons, ligaments and bones and providing scaffolding for skin wounds to heal. There are about 20 different types of collagen in our bodies, each adapted to the needs of specific tissues. | | Tom Deerinck and Mark Ellisman, NCMIR | 1,881 | 1,506,293 | 2,400 | Researchers supplied images & gave permission for public use: From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, August 14, 2015 4:52 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: ECM images from NCMIR? Hi Emily, I have attached 8 assorted images showing ECM. Use one or all. The first 6 are: ?Courtesy Thomas Deerinck and Mark Ellisman, NCMIR The last 2 are ?Courtesy Varda Lev-Ram Ellisman and Mark Ellisman, NCMIR 1: Collagen fibers (main component of ECM). SEM 2: Myelinating axons with ECM between the myelinating cells. TEM. 3: Bundle of peripheral myelinated nerve axonal ECM. SEM. 4: Coronary artery wall with elastin rich ECM pseudocolored light brown. TEM 5: Soleus muscle ECM on the muscle surface. Blood vessel is pseudocolored red. SEM 6: Cross-section of node of Ranvier with surrounding ECM pseudocolored cyan. TEM 7: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. 8: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. Best, Tom D. PS I would love to see the finished product! | Mark Ellisman, NCMIR | EM, SEM | | 451 | 111,169 | 576 | | 941 | 317,773 | 1,200 | Cells, Tools and Techniques | | 1/29/2016 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Molecular interactions at the astrocyte nuclear membrane | Active | Illustration | | These ripples of color represent the outer membrane of the nucleus inside an astrocyte, a star-shaped cell inside the brain. Some proteins (green) act as keys to unlock other proteins (red) that form gates to let small molecules in and out of the nucleus (blue). Visualizing these different cell components at the boundary of the astrocyte nucleus enables researchers to study the molecular and physiological basis of neurological disorders, such as hydrocephalus, a condition in which too much fluid accumulates in the brain, and scar formation in brain tissue leading to abnormal neuronal activity affecting learning and memory. Scientists have now identified a pathway may be common to many of these brain diseases and begun to further examine it to find ways to treat certain brain diseases and injuries. To learn more about this topic, see this <a href=" http://www.nih.gov/news-events/news-releases/scientists-uncover-nuclear-process-brain-may-affect-disease/">news release</a> describing this research. | | Katerina Akassoglou, Gladstone Institute for Neurological Disease & UCSF | 3,300 | 782,215 | 2,550 | The researchers gave permission to use the image: From: Katerina Akassoglou [ mailto:katerina.akassoglou@gladstone.ucsf.edu] Sent: Thursday, August 20, 2015 10:08 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: RE: Q about image in NINDS news release Dear Alisa, Thank you very much for your interest in our image. You are welcome to use it. Please find the image attached. The caption and credits are below: ?Stylized super-resolution image of the astrocyte nucleus showing the cleaved p75 neurotrophin receptor in green at the outer nuclear membrane adjacent to nucleoporins in red. It symbolizes p75NTR as the ?traffic light? at the nuclear pore that controls import of transcription factors that regulate TGF-?-mediated scar formation and neuronal activity. Design and concept by Jorge Palop, Christian Schachtrup, Katerina Akassoglou.? Please let me know if you need any additional information. Best regards, Katerina | Katerina Akassoglou, Gladstone Institute & UCSF | nerve, cells, neurons | | 792 | 48,800 | 612 | | 1,650 | 142,845 | 1,275 | Cells | | 1/28/2016 | | Katerina Akassoglou, Gladstone Institute for Neurological Disease & UCSF | | | A bundle of myelinated peripheral nerve cells (axons) | Active | Photograph | | The extracellular matrix (ECM) is most prevalent in connective tissues but also is present between the stems (axons) of nerve cells. The axons of nerve cells are surrounded by the ECM encasing myelin-supplying Schwann cells, which insulate the axons to help speed the transmission of electric nerve impulses along the axons. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 1,830 | 1,373,899 | 2,400 | Researchers supplied image & gave permission for public use: From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, August 14, 2015 4:52 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: ECM images from NCMIR? Hi Emily, I have attached 8 assorted images showing ECM. Use one or all. The first 6 are: ?Courtesy Thomas Deerinck and Mark Ellisman, NCMIR The last 2 are ?Courtesy Varda Lev-Ram Ellisman and Mark Ellisman, NCMIR 1: Collagen fibers (main component of ECM). SEM 2: Myelinating axons with ECM between the myelinating cells. TEM. 3: Bundle of peripheral myelinated nerve axonal ECM. SEM. 4: Coronary artery wall with elastin rich ECM pseudocolored light brown. TEM 5: Soleus muscle ECM on the muscle surface. Blood vessel is pseudocolored red. SEM 6: Cross-section of node of Ranvier with surrounding ECM pseudocolored cyan. TEM 7: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. 8: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. Best, Tom D. PS I would love to see the finished product! | Mark Ellisman, NCMIR | neurons | | 439 | 96,702 | 576 | | 915 | 310,757 | 1,200 | Cells | | 1/29/2016 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Transmission electron microscopy of coronary artery wall with elastin-rich ECM pseudocolored in light brown | Active | Photograph | | Elastin is a fibrous protein in the extracellular matrix (ECM). It is abundant in artery walls like the one shown here. As its name indicates, elastin confers elasticity. Elastin fibers are at least five times stretchier than rubber bands of the same size. Tissues that expand, such as blood vessels and lungs, need to be both strong and elastic, so they contain both collagen (another ECM protein) and elastin. In this photo, the elastin-rich ECM is colored grayish brown and is most visible at the bottom of the photo. The curved red structures near the top of the image are red blood cells. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 1,699 | 677,762 | 2,400 | Researchers supplied image & gave permission for public use: From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, August 14, 2015 4:52 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: ECM images from NCMIR? Hi Emily, I have attached 8 assorted images showing ECM. Use one or all. The first 6 are: ?Courtesy Thomas Deerinck and Mark Ellisman, NCMIR The last 2 are ?Courtesy Varda Lev-Ram Ellisman and Mark Ellisman, NCMIR 1: Collagen fibers (main component of ECM). SEM 2: Myelinating axons with ECM between the myelinating cells. TEM. 3: Bundle of peripheral myelinated nerve axonal ECM. SEM. 4: Coronary artery wall with elastin rich ECM pseudocolored light brown. TEM 5: Soleus muscle ECM on the muscle surface. Blood vessel is pseudocolored red. SEM 6: Cross-section of node of Ranvier with surrounding ECM pseudocolored cyan. TEM 7: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. 8: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. Best, Tom D. PS I would love to see the finished product! | Mark Ellisman, NCMIR | EM, TEM | | 408 | 76,566 | 576 | | 850 | 202,972 | 1,200 | Cells, Tools and Techniques | | 1/29/2016 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Transmission electron microscopy of myelinated axons with ECM between the axons | Active | Photograph | | The extracellular matrix (ECM) is most prevalent in connective tissues but also is present between the stems (axons) of nerve cells, as shown here. Blue-colored nerve cell axons are surrounded by brown-colored, myelin-supplying Schwann cells, which act like insulation around an electrical wire to help speed the transmission of electric nerve impulses down the axon. The ECM is pale pink. The tiny brown spots within it are the collagen fibers that are part of the ECM. | | Tom Deerinck and Mark Ellisman, NCMIR | 1,798 | 1,163,226 | 2,400 | Researchers supplied image & gave permission for public use: From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, August 14, 2015 4:52 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: ECM images from NCMIR? Hi Emily, I have attached 8 assorted images showing ECM. Use one or all. The first 6 are: ?Courtesy Thomas Deerinck and Mark Ellisman, NCMIR The last 2 are ?Courtesy Varda Lev-Ram Ellisman and Mark Ellisman, NCMIR 1: Collagen fibers (main component of ECM). SEM 2: Myelinating axons with ECM between the myelinating cells. TEM. 3: Bundle of peripheral myelinated nerve axonal ECM. SEM. 4: Coronary artery wall with elastin rich ECM pseudocolored light brown. TEM 5: Soleus muscle ECM on the muscle surface. Blood vessel is pseudocolored red. SEM 6: Cross-section of node of Ranvier with surrounding ECM pseudocolored cyan. TEM 7: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. 8: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. Best, Tom D. PS I would love to see the finished product! | Mark Ellisman, NCMIR | EM, TEM, neurons | | 432 | 108,367 | 576 | | 899 | 339,628 | 1,200 | Cells, Tools and Techniques | | 1/29/2016 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Transmission electron microscopy showing cross-section of the node of Ranvier | Active | Photograph | | Nodes of Ranvier are short gaps in the myelin sheath surrounding myelinated nerve cells (axons). Myelin insulates axons, and the node of Ranvier is where the axon is exposed to the extracellular environment, allowing for the transmission of action potentials at these nodes via ion flows between the inside and outside of the axon. The image shows a cross-section through the node, with the surrounding extracellular matrix encasing and supporting the axon shown in cyan. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 2,213 | 950,366 | 2,400 | Researchers supplied image & gave permission for public use: From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, August 14, 2015 4:52 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: ECM images from NCMIR? Hi Emily, I have attached 8 assorted images showing ECM. Use one or all. The first 6 are: ?Courtesy Thomas Deerinck and Mark Ellisman, NCMIR The last 2 are ?Courtesy Varda Lev-Ram Ellisman and Mark Ellisman, NCMIR 1: Collagen fibers (main component of ECM). SEM 2: Myelinating axons with ECM between the myelinating cells. TEM. 3: Bundle of peripheral myelinated nerve axonal ECM. SEM. 4: Coronary artery wall with elastin rich ECM pseudocolored light brown. TEM 5: Soleus muscle ECM on the muscle surface. Blood vessel is pseudocolored red. SEM 6: Cross-section of node of Ranvier with surrounding ECM pseudocolored cyan. TEM 7: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. 8: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. Best, Tom D. PS I would love to see the finished product! | Mark Ellisman, NCMIR | EM, TEM, neurons | | 531 | 95,392 | 576 | | 1,107 | 274,751 | 1,200 | Cells, Tools and Techniques | | 1/29/2016 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Scanning electron microscopy of the ECM on the surface of a calf muscle | Active | Photograph | | This image shows the extracellular matrix (ECM) on the surface of a soleus (lower calf) muscle in light brown and blood vessels in pink. Near the bottom of the photo, a vessel is opened up to reveal red blood cells. Scientists know less about the ECM in muscle than in other tissues, but it's increasingly clear that the ECM is critical to muscle function, and disruption of the ECM has been associated with many muscle disorders. The ECM in muscles stores and releases growth factors, suggesting that it might play a role in cellular communication. | | Mark Ellisman and Tom Deerinck, National Center for Microscopy and Imaging Research | 1,797 | 1,242,021 | 2,400 | Researchers supplied image & gave permission for public use: From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, August 14, 2015 4:52 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: ECM images from NCMIR? Hi Emily, I have attached 8 assorted images showing ECM. Use one or all. The first 6 are: ?Courtesy Thomas Deerinck and Mark Ellisman, NCMIR The last 2 are ?Courtesy Varda Lev-Ram Ellisman and Mark Ellisman, NCMIR 1: Collagen fibers (main component of ECM). SEM 2: Myelinating axons with ECM between the myelinating cells. TEM. 3: Bundle of peripheral myelinated nerve axonal ECM. SEM. 4: Coronary artery wall with elastin rich ECM pseudocolored light brown. TEM 5: Soleus muscle ECM on the muscle surface. Blood vessel is pseudocolored red. SEM 6: Cross-section of node of Ranvier with surrounding ECM pseudocolored cyan. TEM 7: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. 8: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. Best, Tom D. PS I would love to see the finished product! | Mark Ellisman, NCMIR | EM, SEM | | 431 | 94,043 | 576 | | 899 | 328,864 | 1,200 | Cells, Tools and Techniques | | 1/29/2016 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Developing Arabidopsis flower buds | Active | Photograph | | Flower development is a carefully orchestrated, genetically programmed process that ensures that the male (stamen) and female (pistil) organs form in the right place and at the right time in the flower. In this image of young Arabidopsis flower buds, the gene SUPERMAN (red) is activated at the boundary between the cells destined to form the male and female parts. SUPERMAN activity prevents the central cells, which will ultimately become the female pistil, from activating the gene APETALA3 (green), which induces formation of male flower organs. The goal of this research is to find out how plants maintain cells (called stem cells) that have the potential to develop into any type of cell and how genetic and environmental factors cause stem cells to develop and specialize into different cell types. This work informs future studies in agriculture, medicine and other fields. | | Nathanaël Prunet and Elliot Meyerowitz, Caltech | 564 | 228,748 | 600 | Researchers gave permission for public use of the image: Meyerowitz, Elliot [meyerow@caltech.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Machalek, Alisa Zapp (NIH/NIGMS) [E]?; Prunet, Nathanael E. ? [nprunet@caltech.edu]? Friday, January 29, 2016 4:28 PM Of course! The image was taken by Dr. Nathanaël Prunet in my lab, he should get the photo (and artistic) credit. Elliot ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elliot M. Meyerowitz George W. Beadle Professor of Biology HHMI-GBMF Investigator Division of Biology and Biological Engineering Mail Code 156-29 California Institute of Technology 1200 East California Boulevard Pasadena, California 91125, USA telephone: (626) 395-6889 fax: (626) 449-0756 email: meyerow@caltech.edu http://www.its.caltech.edu/~plantlab/ http://www.computableplant.org ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On Jan 29, 2016, at 1:03 PM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Meyerowitz, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. Thank you again for contributing your eye-catching image of flower cells, which you provided to us earlier for our Life Magnified exhibition. I am reaching out to you now because we also would like to include your award-winning photo of gene activity in Arabidopsis flower buds (at http://www.faseb.org/portals/2/images/opa/BioArt/BioArt_2015_Prunet.jpg) in the Image Gallery on the NIGMS website (at https://images.nigms.nih.gov/). As you know, images in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for use, provided that any users credit the creator, i.e., you, for this work. Would you give us permission to feature this image on the NIGMS Image Gallery in this way? Thank you, Martin J Spiering, PhD, ELS Science Writer & Editor (contractor) | Elliot Meyerowitz, Caltech | | | 135 | 23,222 | 144 | | 282 | 34,700 | 300 | Cells, Genes | | 2/2/2016 | | Nathanaël Prunet, Caltech | | | Confocal microscopy of perineuronal nets in the brain 2 | Active | Photograph | | The photo shows a confocal microscopy image of perineuronal nets (PNNs), which are specialized extracellular matrix (ECM) structures in the brain. The PNN surrounds some nerve cells in brain regions including the cortex, hippocampus and thalamus. Researchers study the PNN to investigate their involvement stabilizing the extracellular environment and forming nets around nerve cells and synapses in the brain. Abnormalities in the PNNs have been linked to a variety of disorders, including epilepsy and schizophrenia, and they limit a process called neural plasticity in which new nerve connections are formed. To visualize the PNNs, researchers labeled them with Wisteria floribunda agglutinin (WFA)-fluorescein. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3741">3741</a>. | | Varda Lev-Ram Ellisman and Mark Ellisman, National Center for Microscopy and Imaging Research | 629 | 133,818 | 700 | Researchers supplied image & gave permission for public use: From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, August 14, 2015 4:52 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: ECM images from NCMIR? Hi Emily, I have attached 8 assorted images showing ECM. Use one or all. The first 6 are: ?Courtesy Thomas Deerinck and Mark Ellisman, NCMIR The last 2 are ?Courtesy Varda Lev-Ram Ellisman and Mark Ellisman, NCMIR 1: Collagen fibers (main component of ECM). SEM 2: Myelinating axons with ECM between the myelinating cells. TEM. 3: Bundle of peripheral myelinated nerve axonal ECM. SEM. 4: Coronary artery wall with elastin rich ECM pseudocolored light brown. TEM 5: Soleus muscle ECM on the muscle surface. Blood vessel is pseudocolored red. SEM 6: Cross-section of node of Ranvier with surrounding ECM pseudocolored cyan. TEM 7: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. 8: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. Best, Tom D. PS I would love to see the finished product! | Mark Ellisman, NCMIR | neurons | | 277 | 130,825 | 308 | | 315 | 41,517 | 350 | Cells, Tools and Techniques | | 1/29/2016 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Confocal microscopy of perineuronal nets in the brain 1 | Active | Photograph | | The photo shows a confocal microscopy image of perineuronal nets (PNNs), which are specialized extracellular matrix (ECM) structures in the brain. The PNN surrounds some nerve cells in brain regions including the cortex, hippocampus and thalamus. Researchers study the PNN to investigate their involvement stabilizing the extracellular environment and forming nets around nerve cells and synapses in the brain. Abnormalities in the PNNs have been linked to a variety of disorders, including epilepsy and schizophrenia, and they limit a process called neural plasticity in which new nerve connections are formed. To visualize the PNNs, researchers labeled them with Wisteria floribunda agglutinin (WFA)-fluorescein. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3742">3742</a>. | | Varda Lev-Ram Ellisman and Mark Ellisman, National Center for Microscopy and Imaging Research | 1,200 | 485,912 | 1,200 | Researchers supplied image & gave permission for public use: From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, August 14, 2015 4:52 PM To: Carlson, Emily (NIH/NIGMS) [E] Subject: Re: ECM images from NCMIR? Hi Emily, I have attached 8 assorted images showing ECM. Use one or all. The first 6 are: ?Courtesy Thomas Deerinck and Mark Ellisman, NCMIR The last 2 are ?Courtesy Varda Lev-Ram Ellisman and Mark Ellisman, NCMIR 1: Collagen fibers (main component of ECM). SEM 2: Myelinating axons with ECM between the myelinating cells. TEM. 3: Bundle of peripheral myelinated nerve axonal ECM. SEM. 4: Coronary artery wall with elastin rich ECM pseudocolored light brown. TEM 5: Soleus muscle ECM on the muscle surface. Blood vessel is pseudocolored red. SEM 6: Cross-section of node of Ranvier with surrounding ECM pseudocolored cyan. TEM 7: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. 8: Cortex neuronal ECM labeled with Wisteria Floribunda Agglutinin (WFA)-fluorescein. The labeling shows perineuronal nets (PNN) which are a specialized form of ECM in the brain. Imaged by confocal microscopy. Best, Tom D. PS I would love to see the finished product! | Mark Ellisman, NCMIR | neurons | | 288 | 43,108 | 288 | | 600 | 93,365 | 600 | Cells, Tools and Techniques | | 1/29/2016 | | Tom Deerinck, National Center for Microscopy and Imaging Research (NCMIR) | | | Serum albumin structure 1 | Active | Illustration | | Serum albumin (SA) is the most abundant protein in the blood plasma of mammals. SA has a characteristic heart-shape structure and is a highly versatile protein. It helps maintain normal water levels in our tissues and carries almost half of all calcium ions in human blood. SA also transports some hormones, nutrients and metals throughout the bloodstream. Despite being very similar to our own SA, those from other animals can cause some mild allergies in people. Therefore, some scientists study SAs from humans and other mammals to learn more about what subtle structural or other differences cause immune responses in the body.<Br><Br> Related to entries <a href="/Pages/DetailPage.aspx?imageID2=3745">3745</a> and <a href="/Pages/DetailPage.aspx?imageID2=3746">3746</a>. | | Wladek Minor, University of Virginia | 2,400 | 2,928,756 | 2,400 | Wladek Minor supplied the image and gave permission for public use: 1/18/2016 Wladek Minor [wladek@iwonka.med.virginia.edu] Sunday, January 17, 2016 12:09 PM Dear Martin, Thank you for your interest in our work. Please find enclosed several variations of pictures related to albumin paper Please select these that you like the best. Have a nice weekend Wladek PS. Sorry for delay - I had a visitor and several deadlines. Moreover, my e-mail was to large and bounced back. On 1/15/2016 12:52 PM, Spiering, Martin (NIH/NIGMS) [C] wrote: Dear Dr. Minor, A couple of days ago, I had reached out to you to ask whether you may have an unpublished image of the serum albumin "heart-shaped" structure that you could make available to us for a blog post featuring your work. Because I've not heard back from you, I just wanted to check whether you got my note. The image is from this paper: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401331/. Please let me know if you have any questions or concerns. Thank you very much, Martin Martin J Spiering, PhD, ELS Science Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Wladek Minor, University of Virginia | | | 576 | 348,397 | 576 | | 1,200 | 1,399,184 | 1,200 | Molecular Structures | | | BioBeat | Wladek Minor, University of Virginia | | | Serum albumin structure 2 | Active | Illustration | | Serum albumin (SA) is the most abundant protein in the blood plasma of mammals. SA has a characteristic heart-shape structure and is a highly versatile protein. It helps maintain normal water levels in our tissues and carries almost half of all calcium ions in human blood. SA also transports some hormones, nutrients and metals throughout the bloodstream. Despite being very similar to our own SA, those from other animals can cause some mild allergies in people. Therefore, some scientists study SAs from humans and other mammals to learn more about what subtle structural or other differences cause immune responses in the body. <Br><Br>Related to entries <a href="/Pages/DetailPage.aspx?imageID2=3744"> 3744</a> and <a href="/Pages/DetailPage.aspx?imageID2=3746">3746</a> | | Wladek Minor, University of Virginia | 2,400 | 1,210,637 | 2,400 | Wladek Minor supplied the image and gave permission for public use: 1/18/2016 Wladek Minor [wladek@iwonka.med.virginia.edu] Sunday, January 17, 2016 12:09 PM Dear Martin, Thank you for your interest in our work. Please find enclosed several variations of pictures related to albumin paper Please select these that you like the best. Have a nice weekend Wladek PS. Sorry for delay - I had a visitor and several deadlines. Moreover, my e-mail was to large and bounced back. On 1/15/2016 12:52 PM, Spiering, Martin (NIH/NIGMS) [C] wrote: Dear Dr. Minor, A couple of days ago, I had reached out to you to ask whether you may have an unpublished image of the serum albumin "heart-shaped" structure that you could make available to us for a blog post featuring your work. Because I've not heard back from you, I just wanted to check whether you got my note. The image is from this paper: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401331/. Please let me know if you have any questions or concerns. Thank you very much, Martin Martin J Spiering, PhD, ELS Science Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Wladek Minor, University of Virginia | | | 576 | 198,092 | 576 | | 1,200 | 590,636 | 1,200 | Molecular Structures | | | | Wladek Minor, University of Virginia | | | Serum albumin structure 3 | Active | Illustration | | Serum albumin (SA) is the most abundant protein in the blood plasma of mammals. SA has a characteristic heart-shape structure and is a highly versatile protein. It helps maintain normal water levels in our tissues and carries almost half of all calcium ions in human blood. SA also transports some hormones, nutrients and metals throughout the bloodstream. Despite being very similar to our own SA, those from other animals can cause some mild allergies in people. Therefore, some scientists study SAs from humans and other mammals to learn more about what subtle structural or other differences cause immune responses in the body. <Br><Br>Related to entries <a href="/Pages/DetailPage.aspx?imageID2=3744"> 3744</a> and <a href="/Pages/DetailPage.aspx?imageID2=3745">3745</a>. | | Wladek Minor, University of Virginia | 2,400 | 2,514,997 | 2,400 | Wladek Minor supplied the image and gave permission for public use: 1/18/2016 Wladek Minor [wladek@iwonka.med.virginia.edu] Sunday, January 17, 2016 12:09 PM Dear Martin, Thank you for your interest in our work. Please find enclosed several variations of pictures related to albumin paper Please select these that you like the best. Have a nice weekend Wladek PS. Sorry for delay - I had a visitor and several deadlines. Moreover, my e-mail was to large and bounced back. On 1/15/2016 12:52 PM, Spiering, Martin (NIH/NIGMS) [C] wrote: Dear Dr. Minor, A couple of days ago, I had reached out to you to ask whether you may have an unpublished image of the serum albumin "heart-shaped" structure that you could make available to us for a blog post featuring your work. Because I've not heard back from you, I just wanted to check whether you got my note. The image is from this paper: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401331/. Please let me know if you have any questions or concerns. Thank you very much, Martin Martin J Spiering, PhD, ELS Science Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Wladek Minor, University of Virginia | | | 576 | 317,420 | 576 | | 1,200 | 1,206,444 | 1,200 | Molecular Structures | | | | Wladek Minor, University of Virginia | | | Cryo-electron microscopy of the dengue virus showing protective membrane and membrane proteins | Active | Video | | | | Hong Zhou, UCLA | | 41,557,993 | | Researchers gave permission for public use: Hi, Carolyn, It reads perfect. You also have my permission to use the video. Best regards, Hong _____________________________________________________ Z. Hong Zhou, Ph.D., 310.983.1033/206.0033 Email: Hong.Zhou@UCLA.edu Electron Imaging Center for Nanomachines (EICN), CNSI http://www.EICN.ucla.edu and Dept of Microbiology, Immun. & Mol. Genetics http://www.mimg.ucla.edu/ UCLA, Los Angeles, CA 90095-7364 | Office: CNSI 6350A, cell: 310-694-7527 UCLA Mail code: 736422, BSRB 237 Courier delivery: 570 Westwood Plaza, UCLA Building 114, CNSI 6350, Los Angeles, CA 90095 From: Beans, Carolyn (NIH/NIGMS) [C] [ mailto:carolyn.beans@nih.gov] Sent: Friday, January 22, 2016 7:36 AM To: Hong.Zhou@UCLA.edu Subject: RE: Covering Your Research in NIGMS's Biomedical Beat Blog Hi Hong, Thanks for your quick response! We?d like to use the video of the dengue virus in the post. Do we also have permission to use this video in our image gallery? The video would then be made available for educational, news media, or research purposes, provided that users credit the source of the image, i.e., you. Below is a draft of the section of the post covering your research. Could you please review it for scientific accuracy and let me know if you have any concerns by this upcoming Monday? Best, Carolyn | Hong Zhou, UCLA | cryo-electron microscopy | | | | | | | | | Cells, Molecular Structures | | 2/2/2016 | | Hong Zhou, UCLA | | | Cryo-electron microscopy revealing the "wasabi receptor" | Active | Illustration | | The TRPA1 protein is responsible for the burn you feel when you taste a bite of sushi topped with wasabi. Known therefore informally as the "wasabi receptor," this protein forms pores in the membranes of nerve cells that sense tastes or odors. Pungent chemicals like wasabi or mustard oil cause the pores to open, which then triggers a tingling or burn on our tongue. This receptor also produces feelings of pain in response to chemicals produced within our own bodies when our tissues are damaged or inflamed. Researchers used cryo-EM to reveal the structure of the wasabi receptor at a resolution of about 4 angstroms (a credit card is about 8 million angstroms thick). This detailed structure can help scientists understand both how we feel pain and how we can limit it by developing therapies to block the receptor. For more on cryo-EM see the blog post <a href=" https://biobeat.nigms.nih.gov/2016/02/cryo-electron-microscopy-reveals-molecules-in-ever-greater-detail/">Cryo-Electron Microscopy Reveals Molecules in Ever Greater Detail</a>. | | Jean-Paul Armache and Yifan Cheng, HHMI, UCSF | 4,731 | 3,242,664 | 4,549 | Researchers gave permission for public use: Dear Carolyn, Absolutely. I will send you an image shortly. Thanks for including our work. best, Yifan ************************************************************ Yifan Cheng, Ph.D. Howard Hughes Medical Institute University of California San Francisco Department of Biochemistry and Biophysics Mission Bay, Genentech Hall, MC 2240 600 16th Street, Room S472D San Francisco, CA 94143, USA Phone: 1-415-514-9707 (office), 1-415-514-9708 (lab), Fax: 1-415-514-4145 email: ycheng@ucsf.edu website: http://cryoem.ucsf.edu; https://www.hhmi.org/scientists/yifan-cheng From: "Beans, Carolyn (NIH/NIGMS) [C]" < carolyn.beans@nih.gov> Date: Friday, January 15, 2016 at 8:32 AM To: Yifan Cheng < ycheng@ucsf.edu> Subject: Covering Your Research in NIGMS's Biomedical Beat Blog Dear Dr. Cheng, In honor of Nature Methods naming cryo-EM the ?Method of the Year? for 2015, we?re working on an article for our Biomedical Beat blog that highlights a couple of NIGMS-funded advances that were made possible because of this technology. We?d like to include an image of the TRPA1 ion channel structure that you describe in your 2015 Nature paper. Do you have an image we could use? It doesn?t have to be one that actually appeared in the publication. If you do have an image to share, would you give us permission to also include it in our online collection of research-related images? Images and videos in this gallery are made available for educational, news media, or research purposes, provided that users credit the source of the image, i.e., you. We?d like to get this post up as soon as possible so, if at all possible, I?d appreciate it if you could get back to me by the end of today. Thanks for your help! Best, Carolyn Carolyn Beans, Ph.D. Science Writer (contractor) National Institutes of Health/NIGMS | Yifan Cheng, HHMI, UCSF | | | 1,136 | 891,548 | 1,092 | | 2,366 | 2,330,645 | 2,275 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | 2/2/2016 | | Jean-Paul Armache, UCSF | | | 3D image of actin in a cell | Active | Photograph | | Actin is an essential protein in a cell's skeleton (cytoskeleton). It forms a dense network of thin filaments in the cell. Here, researchers have used a technique called stochastic optical reconstruction microscopy (STORM) to visualize the actin network in a cell in three dimensions. The actin strands were labeled with a dye called Alexa Fluor 647-phalloidin. This image appears in a study published by <a href=" http://www.nature.com/nmeth/journal/v9/n2/full/nmeth.1841.html"><i>Nature Methods</i></a>, which reports how researchers use STORM to visualize the cytoskeleton. | | Xiaowei Zhuang, HHMI, Harvard University, and Nature Publishing Group | 1,255 | 3,804,697 | 1,355 | From Fig. 2A in K. Xu et al. Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton. Nat. Meth. 9, 185-188 (2012). Journal and researchers gave permission for use: Dear Dr. Martin Spiering, Thank you for placing your order through Copyright Clearance Center's RightsLink service. Nature Publishing Group has partnered with RightsLink to license its content. This notice is a confirmation that your order was successful. Your order details and publisher terms and conditions are available by clicking the link below: http://s100.copyright.com/CustomerAdmin/PLF.jsp?ref=aa2af094-a8e9-44ca-afac-4bfdfaf53eea Order Details Licensee: National Institute of General Medical Sciences License Date: Feb 5, 2016 License Number: 3802520020808 Publication: Nature Methods Title: Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton Fig. 2A Type Of Use: post on a website Total: 0.00 USD From: Zhuang, Xiaowei [ mailto:zhuang@chemistry.harvard.edu] Sent: Friday, January 22, 2016 7:13 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: NIH hoping to use your STORM_4 image--need description, etc. Dear Alisa, In the attachment, please find the higher resolution image of the STORM_4 image. Here is the description of the image, credit line and reference information: STORM_4: Three-dimensional (3D) STORM image of actin in a cell. The z-dimension information is color-coded. [credit the Xiaowei Zhuang laboratory, Howard Hughes Medical Institute, Harvard University] Best Xiaowei ============================================== Xiaowei Zhuang Investigator, Howard Hughes Medical Institute David B. Arnold Jr. Professor of Science Professor of Chemistry and Chemical Biology Professor of Physics 12 Oxford Street Harvard University Cambridge, MA 02138 | This work was supported in part by the US National Institutes of Health and a Collaborative Innovation Award (43667) DP2-GM132681 coauthor Ke Xu | | | 301 | 233,299 | 325 | | 628 | 996,544 | 678 | Cells, Molecular Structures, Tools and Techniques | | | | Xiaowei Zhuang, Howard Hughes Medical Institute, Harvard University | | | A dynamic model of the DNA helicase protein complex | Active | Video | | This short video shows a model of the DNA helicase in yeast. This DNA helicase has 11 proteins that work together to unwind DNA during the process of copying it, called DNA replication. Scientists used a technique called cryo-electron microscopy (cryo-EM), which allowed them to study the helicase structure in solution rather than in static crystals. Cryo-EM in combination with computer modeling therefore allows researchers to see movements and other dynamic changes in the protein. The cryo-EM approach revealed the helicase structure at much greater resolution than could be obtained before. The researchers think that a repeated motion within the protein as shown in the video helps it move along the DNA strand. To read more about DNA helicase and this proposed mechanism, see this <a href=" https://www.bnl.gov/newsroom/news.php?a=111809">news release by Brookhaven National Laboratory</a>. | | Huilin Li, Stony Brook University, and Michael O'Connell, Rockefeller University | | 25,464,798 | | Researchers gave permission for public use: From: Li, Huilin [hli@bnl.gov] Sent: Wednesday, February 10, 2016 1:13 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Permission to use your video on NIH website? Hi Martin, Thanks for your interest. It will be a great honor our video on the eukaryotic CMG helicase can be posted at NIGMS website. Best Huilin On Feb 10, 2016, at 10:06 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Li, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we would like to include your striking and insightful animation of the DNA helicase structure (at https://www.youtube.com/watch?v=EbXlPUfajCk) on the NIGMS website (at https://images.nigms.nih.gov/). Images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would let us feature your video on the NIGMS Image Gallery in this way? If so, could you please forward me a file (if possible in MP4 format) containing this animation? Thank you, Martin J Spiering, PhD, ELS Science Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Huilin Li and Michael O'Connell | | | | | | | | | | Genes, Molecular Structures, Tools and Techniques | | 2/10/2016 | | Huilin Li, Stony Brook University | | | Circadian rhythm neurons in the fruit fly brain | Active | Photograph | | Some nerve cells (neurons) in the brain keep track of the daily cycle. This time-keeping mechanism, called the circadian clock, is found in all animals including us. The circadian clock controls our daily activities such as sleep and wakefulness. Researchers are interested in finding the neuron circuits involved in this time keeping and how the information about daily time in the brain is relayed to the rest of the body. In this image of a brain of the fruit fly <i>Drosophila</i> the time-of-day information flowing through the brain has been visualized by staining the neurons involved: clock neurons (shown in blue) function as "pacemakers" by communicating with neurons that produce a short protein called leucokinin (LK) (red), which, in turn, relays the time signal to other neurons, called LK-R neurons (green). This signaling cascade set in motion by the pacemaker neurons helps synchronize the fly's daily activity with the 24-hour cycle. To learn more about what scientists have found out about circadian pacemaker neurons in the fruit fly <a href=" http://www.nyu.edu/about/news-publications/news/2016/02/29/biological-clocks-orchestrate-behavioral-rhythms-by-sending-signals-downstream.html">see this news release by New York University</a>. This work was featured in the <i>Biomedical Beat</i> blog post <a href=" https://biobeat.nigms.nih.gov/2016/03/cool-image-a-circadian-circuit/">Cool Image: A Circadian Circuit.</a> | | Matthieu Cavey and Justin Blau, New York University | 750 | 2,178,216 | 968 | Researchers gave permission for public use of the image: Justin Blau [justin.blau@nyu.edu] Thursday, March 10, 2016 2:37 AM Dear Martin, Yes, you can use our image on your image gallery. No problem! I changed the caption a little and added another author - hope that is OK Also see other edits on the attached. I hope this all makes sense! Please let me know if you have questions..... Thanks for highlighting our work! Best, Justin [Available] Spiering, Martin (NIH/NIGMS) [C] [Reply] [Reply All] [Forward] Actions In response to the message from Justin Blau, Fri 3/4 To: justin.blau@nyu.edu Attachments: Sarlin Bio Clock Blog Bla~1.docx? (825 KB?)?[Open as Web Page?] Sent Items Wednesday, March 09, 2016 10:03 AM Dear Justin, Thank you very much again for sending us your stunning image of the fly circadian circuit. We've now drafted a short piece describing this picture and highlighting your recent work published in Nature Neuroscience and also featured in this release ( http://www.nyu.edu/about/news-publications/news/2016/02/29/biological-clocks-orchestrate-behavioral-rhythms-by-sending-signals-downstream.html). We would be very grateful if you could review the attached draft for accuracy. Would you be able to review this piece for us by this Friday (we're planning to post the article early next week to coincide with the change to daylight savings time)? Please let me know if you need more time or have any questions. Also, we would like to include your image in our Image Gallery on the NIGMS website (at https://images.nigms.nih.gov/). Media in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your photo in our image gallery in this way? Thanks again, Martin | Justin Blau, New York University | | | 187 | 36,196 | 242 | | 375 | 112,410 | 484 | Cells | | | BioBeat | Justin Blau, New York University | | | Coronavirus spike protein structure | Active | Illustration | | Coronaviruses are enveloped viruses responsible for 30 percent of mild respiratory infections and atypical deadly pneumonia in humans worldwide. These deadly pneumonia include those caused by infections with severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV). The coronavirus spike glycoprotein mediates virus entry into cells and represents an important therapeutic target. The illustration shows a viral membrane decorated with spike glycoproteins; highlighted in red is a potential neutralization site, which is a protein sequence that might be used as a target for vaccines to combat viruses such as MERS-CoV and other coronaviruses. | | David Veesler, University of Washington | 2,513 | 1,334,944 | 2,480 | Researchers gave permission for public use: From: David Veesler [dveesler@uw.edu] Sent: Monday, February 29, 2016 5:17 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Permission to add your artwork to the NIGMS image gallery Dear Martin, I would be delighted to let you include our coronavirus image on the NIGMS website. Please let me know what document/caption you need exactly and I will send that to you? Best regards. David David Veesler, PhD Assistant Professor Department of Biochemistry University of Washington Seattle, WA 98195 dveesler@uw.edu http://faculty.washington.edu/dveesler/ http://depts.washington.edu/biowww/pages/faculty-Veesler.shtml On Feb 29, 2016, at 10:02 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Veesler, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we noticed your very striking illustration of coronavirus infecting a cell (see attached) featured in this recent press release (at http://hsnewsbeat.uw.edu/story/electron-microscopy-unveils-structure-coronaviruses-use-enter-cells). Because this image fits very well with NIGMS' mission, we would be very grateful if we could include your artwork in our image gallery on the NIGMS website (at https://images.nigms.nih.gov/). Images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in our image gallery in this way? Thank you, Martin J Spiering, PhD, MS, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | David Veesler, University of Washington | | | 603 | 96,986 | 595 | | 1,257 | 269,676 | 1,240 | Molecular Structures | | | | Melody Campbell, UCSF | | | Dengue virus membrane protein structure | Active | Illustration | | Dengue virus is a mosquito-borne illness that infects millions of people in the tropics and subtropics each year. Like many viruses, dengue is enclosed by a protective membrane. The proteins that span this membrane play an important role in the life cycle of the virus. Scientists used cryo-EM to determine the structure of a dengue virus at a 3.5-angstrom resolution to reveal how the membrane proteins undergo major structural changes as the virus matures and infects a host. The image shows a side view of the structure of a protein composed of two smaller proteins, called E and M. Each E and M contributes two molecules to the overall protein structure (called a heterotetramer), which is important for assembling and holding together the viral membrane, i.e., the shell that surrounds the genetic material of the dengue virus. The dengue protein's structure has revealed some portions in the protein that might be good targets for developing medications that could be used to combat dengue virus infections. For more on cryo-EM see the blog post <a href=" https://biobeat.nigms.nih.gov/2016/02/cryo-electron-microscopy-reveals-molecules-in-ever-greater-detail/">Cryo-Electron Microscopy Reveals Molecules in Ever Greater Detail.</a> You can watch a rotating view of the dengue virus surface structure <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3748">in video 3748.</a> | | Hong Zhou, UCLA | 1,800 | 589,722 | 2,400 | Researcher gave permission for public use: Dear Martin, Please find a high resolution still image in the attachment. I also attach a side view of the protein subunits that make up the virus. Thank you and have a wonderful weekend! Best regards, Hong Z. Hong Zhou, Ph.D., 310.983.1033/206.0033 Email: Hong.Zhou@UCLA.edu Electron Imaging Center for Nanomachines (EICN), CNSI http://www.EICN.ucla.edu and Dept of Microbiology, Immun. & Mol. Genetics http://www.mimg.ucla.edu/ UCLA, Los Angeles, CA 90095-7364 | Office: CNSI 6350A, cell: 310-694-7527 UCLA Mail code: 736422, BSRB 237 Courier delivery: 570 Westwood Plaza, UCLA Building 114, CNSI 6350, Los Angeles, CA 90095 Spiering, Martin (NIH/NIGMS) [C] To: Hong.Zhou@UCLA.edu Cc: Machalek, Alisa Zapp (NIH/NIGMS) [E] Sent Items Wednesday, March 09, 2016 4:03 PM You replied on 3/11/2016 7:20 AM. Dear Dr. Zhou, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. As you may recall, a colleague of mine, Carolyn Beans, had been in touch with you about the video of the dengue virus structure you had determined by cryo-EM and which is now also posted on our website (at https://images.nigms.nih.gov/index.cfm?event=viewDetail&imageID=3748). Thank you again for letting us feature your great work! I just have a follow-up question: would you have a high-resolution still image of the dengue virus cryo-EM? we usually like to include also a still image of the videos we feature, and a high-res image would be very ideal. Please let me know if you have any questions. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Hong Zhou, UCLA | cryo-electron microscopy | | 450 | 91,190 | 600 | | 900 | 274,219 | 1,200 | Molecular Structures, Tools and Techniques | | 3/16/2016 | | Hong Zhou, UCLA | | | Cryo-EM reveals how the HIV capsid attaches to a human protein to evade immune detection | Active | Illustration | | The illustration shows the capsid of human immunodeficiency virus (HIV) whose molecular features were resolved with cryo-electron microscopy (cryo-EM). On the left, the HIV capsid is "naked," a state in which it would be easily detected by and removed from cells. However, as shown on the right, when the viral capsid binds to and is covered with a host protein, called cyclophilin A (shown in red), it evades detection and enters and invades the human cell to use it to establish an infection. To learn more about how cyclophilin A helps HIV infect cells and how scientists used cryo-EM to find out the mechanism by which the HIV capsid attaches to cyclophilin A, <a href=" https://news.illinois.edu/blog/view/6367/335013">see this news release by the University of Illinois</a>. A study reporting these findings was published in the journal <a href=" http://www.nature.com/ncomms/2016/160304/ncomms10714/full/ncomms10714.html"><i>Nature Communications</i></a>. | | Juan R. Perilla, Klaus Schulten and the Theoretical and Computational Biophysics Group | 800 | 559,615 | 1,200 | Researchers gave permission for public use: From: jrperillaj@gmail.com [jrperillaj@gmail.com] on behalf of Juan R. Perilla [jperilla@illinois.edu] Sent: Monday, March 07, 2016 11:16 AM To: Spiering, Martin (NIH/NIGMS) [C] Cc: Schulten, Klaus J Subject: Re: Inclusion of HIV-cyclophilin A image in NIGMS image gallery Dear Martin, I would be happy if you include my figure in NIH's image repository. You can download a high version of the figure using the following link: https://www.dropbox.com/s/y12v3za0t8ezk2s/CaCypA-sidebyside.tif?dl=0 Best regards, ~ Juan On Mon, Mar 7, 2016 at 9:58 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Schulten, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we just noticed one of your very striking illustrations (see attached) depicting HIV covered in cyclophilin A featured in this recent release ( https://news.illinois.edu/blog/view/6367/335013) about your exciting structural biology work on HIV. We would be very grateful if we could include your artwork in our Image Gallery on the NIGMS website (at https://images.nigms.nih.gov/). As you may know, images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in our image gallery in this way? If so, could you send us a high-resolution version of your illustration (if available)? Please let me know if you have any questions. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Klaus Schulten, University of Illinois at Urbana-Champaign | | | 192 | 37,042 | 288 | | 400 | 66,896 | 600 | Molecular Structures, Tools and Techniques | | | | Juan R. Perilla, University of Illinois at Urbana-Champaign | | | Protective membrane and membrane proteins of the dengue virus visualized with cryo-EM | Active | Illustration | | Dengue virus is a mosquito-borne illness that infects millions of people in the tropics and subtropics each year. Like many viruses, dengue is enclosed by a protective membrane. The proteins that span this membrane play an important role in the life cycle of the virus. Scientists used cryo-EM to determine the structure of a dengue virus at a 3.5-angstrom resolution to reveal how the membrane proteins undergo major structural changes as the virus matures and infects a host. For more on cryo-EM see the blog post <a href=" https://biobeat.nigms.nih.gov/2016/02/cryo-electron-microscopy-reveals-molecules-in-ever-greater-detail/">Cryo-Electron Microscopy Reveals Molecules in Ever Greater Detail.</a> You can watch a rotating view of the dengue virus surface structure <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3748">in video 3748.</a> | | Hong Zhou, UCLA | 2,400 | 2,128,916 | 2,400 | Researcher sent the image and gave permission for public use: HONG ZHOU [hz@g.ucla.edu] on behalf of Hong Zhou [hong.zhou@ucla.edu] Inbox Friday, March 11, 2016 7:03 PM Dear Martin, Please find a high resolution still image in the attachment. I also attach a side view of the protein subunits that make up the virus. Thank you and have a wonderful weekend! Best regards, Hong _____________________________________________________ Z. Hong Zhou, Ph.D., 310.983.1033/206.0033 Email: Hong.Zhou@UCLA.edu Electron Imaging Center for Nanomachines (EICN), CNSI http://www.EICN.ucla.edu and Dept of Microbiology, Immun. & Mol. Genetics http://www.mimg.ucla.edu/ UCLA, Los Angeles, CA 90095-7364 | Office: CNSI 6350A, cell: 310-694-7527 UCLA Mail code: 736422, BSRB 237 Courier delivery: 570 Westwood Plaza, UCLA Building 114, CNSI 6350, Los Angeles, CA Spiering, Martin (NIH/NIGMS) [C] To: Hong.Zhou@UCLA.edu Cc: Machalek, Alisa Zapp (NIH/NIGMS) [E] Sent Items Wednesday, March 09, 2016 4:03 PM You replied on 3/11/2016 7:20 AM. Dear Dr. Zhou, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. As you may recall, a colleague of mine, Carolyn Beans, had been in touch with you about the video of the dengue virus structure you had determined by cryo-EM and which is now also posted on our website (at https://images.nigms.nih.gov/index.cfm?event=viewDetail&imageID=3748). Thank you again for letting us feature your great work! I just have a follow-up question: would you have a high-resolution still image of the dengue virus cryo-EM? we usually like to include also a still image of the videos we feature, and a high-res image would be very ideal. Please let me know if you have any questions. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Hong Zhou, UCLA | cryo-electron microscopy | | 576 | 108,554 | 576 | | 1,200 | 396,457 | 1,200 | Molecular Structures, Tools and Techniques | | 3/15/2016 | | Hong Zhou, UCLA | | | The 26S proteasome engages with a protein substrate | Active | Illustration | | The proteasome is a critical multiprotein complex in the cell that breaks down and recycles proteins that have become damaged or are no longer needed. This illustration shows a protein substrate (red) that is bound through its ubiquitin chain (blue) to one of the ubiquitin receptors of the proteasome (Rpn10, yellow). The substrate's flexible engagement region gets engaged by the AAA+ motor of the proteasome (cyan), which initiates mechanical pulling, unfolding and movement of the protein into the proteasome's interior for cleavage into small shorter protein pieces called peptides. During movement of the substrate, its ubiquitin modification gets cleaved off by the deubiquitinase Rpn11 (green), which sits directly above the entrance to the AAA+ motor pore and acts as a gatekeeper to ensure efficient ubiquitin removal, a prerequisite for fast protein breakdown by the 26S proteasome. Related to video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3764">3764</a>. | | Andreas Martin, HHMI | 1,290 | 4,267,374 | 1,102 | Researcher gave permission for public use: Dear Martin, Sorry about the delay in getting back to you. Yes, I give you permission to use my illustration and video. I attached the narrative with a few minor edits. It looks good. Thanks, Andy ------------------------------- Andy Martin Investigator, Howard Hughes Medical Institute Associate Professor, Department of Molecular & Cell Biology; QB3 Institute University of California at Berkeley 570 Stanley Hall Berkeley CA 94720-3220 USA | Andreas Martin, HHMI | | | 309 | 244,782 | 264 | | 645 | 1,068,174 | 551 | Molecular Structures | | 3/22/2016 | | Andreas Martin, HHMI | | | Movie of the 19S proteasome subunit processing a protein substrate | Active | Video | | The proteasome is a critical multiprotein complex in the cell that breaks down and recycles proteins that have become damaged or are no longer needed. This movie shows how a protein substrate (red) is bound through its ubiquitin chain (blue) to one of the ubiquitin receptors of the proteasome (Rpn10, yellow). The substrate's flexible engagement region then gets engaged by the AAA+ motor of the proteasome (cyan), which initiates mechanical pulling, unfolding and movement of the protein into the proteasome's interior for cleavage into shorter protein pieces called peptides. During movement of the substrate, its ubiquitin modification gets cleaved off by the deubiquitinase Rpn11 (green), which sits directly above the entrance to the AAA+ motor pore and acts as a gatekeeper to ensure efficient ubiquitin removal, a prerequisite for fast protein breakdown by the 26S proteasome. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3763">3763</a>. | | Andreas Martin, HHMI | | 12,165,596 | | Researcher gave permission for public use: Dear Martin, Sorry about the delay in getting back to you. Yes, I give you permission to use my illustration and video. I attached the narrative with a few minor edits. It looks good. Thanks, Andy ------------------------------- Andy Martin Investigator, Howard Hughes Medical Institute Associate Professor, Department of Molecular & Cell Biology; QB3 Institute University of California at Berkeley 570 Stanley Hall Berkeley CA 94720-3220 USA | Andreas Martin, HHMI | | | | | | | | | | Molecular Structures | | 3/22/2016 | | Andreas Martin, HHMI | | | Trypanosoma brucei, the cause of sleeping sickness | Active | Photograph | | <i>Trypanosoma brucei</i> is a single-cell parasite that causes sleeping sickness in humans. Scientists have been studying trypanosomes for some time because of their negative effects on human and also animal health, especially in sub-Saharan Africa. Moreover, because these organisms evolved on a separate path from those of animals and plants more than a billion years ago, researchers study trypanosomes to find out what traits they may harbor that are common to or different from those of other eukaryotes (i.e., those organisms having a nucleus and mitochondria). This image shows the <i>T. brucei</i> cell membrane in red, the DNA in the nucleus and kinetoplast (a structure unique to protozoans, including trypanosomes, which contains mitochondrial DNA) in blue and nuclear pore complexes (which allow molecules to pass into or out of the nucleus) in green. Scientists have found that the trypanosome nuclear pore complex has a unique mechanism by which it attaches to the nuclear envelope. In addition, the trypanosome nuclear pore complex differs from those of other eukaryotes because its components have a near-complete symmetry, and it lacks almost all of the proteins that in other eukaryotes studied so far are required to assemble the pore. | | Jeffrey DeGrasse, Rockefeller University | 927 | 60,159 | 1,024 | Researchers gave permission for public use: From: Michael P. Rout [rout@mail.rockefeller.edu] To: Spiering, Martin (NIH/NIGMS) [C] Wednesday, March 23, 2016 11:27 AM Hi Martin, apologies for the delay in getting back to you! Of course, no worries - the image is attached. The trypanosome membrane is stained in red (tubulin), with the nuclear pore complex highlighted in green (Nup98) and DNA highlighted in blue (DAPI). Image credit: Dr.Jeffery deGrasse; DeGrasse JA et al., Mol Cell Proteomics. 2009 Sep;8(9):2119-30. PMID: 19525551; Obado SO et al., PLoS Biol. 2016 Feb 18;14(2):e1002365. PMID: 26891179 Hope this is OK - let me know if you need anything else! Best, Mike. On Mar 22, 2016, at 12:37 PM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Rout, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we noticed a very striking image of trypanosomes in this recent news release ( http://newswire.rockefeller.edu/2016/03/17/parasites-reveal-how-evolution-has-molded-an-ancient-nuclear-structure/) describing your research advance on the structure of the nuclear pore complex in these organisms. We would be very grateful if we could include your artwork in our Image Gallery on the NIGMS website (at https://images.nigms.nih.gov/). Images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in our image gallery in this way? If so, could you send us a high-resolution version of your image? Please let me know if you have any questions. | Michael Rout, Rockefeller University | | | 231 | 4,656 | 256 | | 463 | 15,964 | 512 | Cells, Genes | | 3/23/2016 | | Michael Rout, Rockefeller University | | | TFIID complex binds DNA to start gene transcription | Active | Illustration | | Gene transcription is a process by which the genetic information encoded in DNA is transcribed into RNA. It's essential for all life and requires the activity of proteins, called transcription factors, that detect where in a DNA strand transcription should start. In eukaryotes (i.e., those that have a nucleus and mitochondria), a protein complex comprising 14 different proteins is responsible for sniffing out transcription start sites and starting the process. This complex, called TFIID, represents the core machinery to which an enzyme, named RNA polymerase, can bind to and read the DNA and transcribe it to RNA. Scientists have used cryo-electron microscopy (cryo-EM) to visualize the TFIID-RNA polymerase-DNA complex in unprecedented detail. In this illustration, TFIID (blue) contacts the DNA and recruits the RNA polymerase (gray) for gene transcription. The start of the transcribed gene is shown with a flash of light. To learn more about the research that has shed new light on gene transcription, see this <a href=" http://newscenter.lbl.gov/2016/03/23/unlocking-the-secrets-of-gene-expression/">news release from Berkeley Lab</a>. Related to <a href="/Pages/DetailPage.aspx?imageID2=5730""> video 5730</a>. | | Eva Nogales, Berkeley Lab | 768 | 455,356 | 1,000 | Researchers gave permissions for public use: Eva Nogales [enogales@lbl.gov] Thursday, March 24, 2016 2:24 PM Dear Martin, This is great! We are delighted. I will be sending you a few, so that you can choose. We can also send you a video, if you want. Just let me know. Can you let me know if these can be the same as in the publication (it will simplify things if I don't have to make new figures!) Thanks, Eva Spiering, Martin (NIH/NIGMS) [C] To: enogales@lbl.gov Thursday, March 24, 2016 11:40 AM Dear Dr. Nogales, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we noticed your very striking image of the TFIID complex on DNA (see attached) in this recent news release ( http://newscenter.lbl.gov/2016/03/23/unlocking-the-secrets-of-gene-expression/) describing your groundbreaking research advance on revealing the detailed structure of this complex. We would be very grateful if we could include your artwork in our Image Gallery on the NIGMS website (at https://images.nigms.nih.gov/). Images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in our image gallery in this way? If so, could you send me a high-resolution version of your image, if available? Please let me know if you have any questions. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Eva Nogales, Berkeley Lab | | | 184 | 14,278 | 240 | | 384 | 30,534 | 500 | Genes, Molecular Structures, Tools and Techniques | | | | Eva Nogales, Berkeley Lab | | | Molecular model of freshly made Rous sarcoma virus (RSV) | Active | Illustration | | Viruses have been the foes of animals and other organisms for time immemorial. For almost as long, they've stayed well hidden from view because they are so tiny (they aren't even cells, so scientists call the individual virus a "particle"). This image shows a molecular model of a particle of the Rous sarcoma virus (RSV), a virus that infects and sometimes causes cancer in chickens. In the background is a photo of red blood cells. The particle shown is "immature" (not yet capable of infecting new cells) because it has just budded from an infected chicken cell and entered the bird's bloodstream. The outer shell of the immature virus is made up of a regular assembly of large proteins (shown in red) that are linked together with short protein molecules called peptides (green). This outer shell covers and protects the proteins (blue) that form the inner shell of the particle. But as you can see, the protective armor of the immature virus contains gaping holes. As the particle matures, the short peptides are removed and the large proteins rearrange, fusing together into a solid sphere capable of infecting new cells. While still immature, the particle is vulnerable to drugs that block its development. Knowing the structure of the immature particle may help scientists develop better medications against RSV and similar viruses in humans. Scientists used sophisticated computational tools to reconstruct the RSV atomic structure by crunching various data on the RSV proteins to simulate the entire structure of immature RSV. For more on RSV and how researchers revealed its delicate structure, see the NIH director's blog post <a href=" https://directorsblog.nih.gov/2016/04/14/snapshots-of-life-imperfect-but-beautiful-intruder/">Snapshots of Life: Imperfect but Beautiful Intruder.</a> | | Boon Chong Goh, University of Illinois at Urbana-Champaign | 2,160 | 9,953,644 | 3,840 | Researchers gave permission for public use: Goh, Boon Chong [bgoh3@illinois.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Schulten, Klaus J[schulten@illinois.edu]; Machalek, Alisa Zapp (NIH/NIGMS) [E]; Boon Chong Goh [bcgoh@ks.uiuc.edu]? Thursday, April 14, 2016 5:17 PM Dear Martin, Thanks for your e-mail. Yes, we would love to share the image to the public via your NIGMS website. I attached a high resolution JPEG figure in this e-mail. A high resolution TIFF figure (24 MB) can be downloaded via the following Dropbox link: https://www.dropbox.com/s/dqd9raxncaqvzb7/Imperfect%20intruder%20for%20NIH.tif?dl=0 Please let me know if you need more information or have any further question. Best wishes, Boon -- Boon Chong Goh Theoretical and Computational Biophysics Group 3115 Beckman Institute 405 N. Mathews Avenue Urbana, IL 61801 www.ks.uiuc.edu/~bcgoh | Klaus Schulten, Theoretical and Computational Biophysics Group | | | 519 | 105,620 | 922 | | 1,080 | 317,551 | 1,920 | Cells, Molecular Structures, Tools and Techniques | | 4/15/2016 | | Boon Chong Goh, University of Illinois at Urbana-Champaign | | | The Proteasome: The Cell's Trash Processor in Action | Active | Video | | Our cells are constantly removing and recycling molecular waste. This video shows one way cells process their trash. | | Andreas Martin, University of California, Berkeley | | 11,306,647 | | | | proteins | | | | | | | | | Cells | | 4/22/2016 | | | | | Precisely Delivering Chemical Cargo to Cells | Active | Video | | Moving protein or other molecules to specific cells to treat or examine them has been a major biological challenge. Scientists have now developed a technique for delivering chemicals to individual cells. The approach involves gold nanowires that, for example, can carry tumor-killing proteins. The advance was possible after researchers developed electric tweezers that could manipulate gold nanowires to help deliver drugs to single cells. <br /><br />This movie shows the manipulation of the nanowires for drug delivery to a single cell. To learn more about this technique, see this post in the <a href=" https://www.nigms.nih.gov/education/Booklets/Computing-Life/Pages/Home.aspx">Computing Life series</a>. | | Chia-Ling Chien, Johns Hopkins University, and Nature Nanotechnology
| | 698,802 | | | Chia-Ling Chien, Johns Hopkins University | nanowire drug delivery micromanipulation | | | | | | | | | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | | | Nature Nanotechnology
| | | Cool Video: Cloud-Like Active Site | Inactive | Video | | | | | | 1,249,909 | | | | | | | | | | | | | | | 5/5/2016 | | | | | A multicolored fish scale 1 | Active | Photograph | | Each of the colored specs in this image is a cell on the surface of a fish scale. To better understand how wounds heal, scientists have inserted genes that make cells brightly glow in different colors into the skin cells of zebrafish, a fish often used in laboratory research. The colors enable the researchers to track each individual cell, for example, as it moves to the location of a cut or scrape over the course of several days. These technicolor fish endowed with glowing skin cells dubbed "skinbow" provide important insight into how tissues recover and regenerate after an injury. <Br><Br>For more information on skinbow fish, see the Biomedical Beat blog post <a href=" https://biobeat.nigms.nih.gov/2016/04/visualizing-skin-regeneration-in-real-time/">Visualizing Skin Regeneration in Real Time</a> and <a href=" http://today.duke.edu/2016/03/zebrafish">a press release from Duke University highlighting this research</a>. Related to <a href="/Pages/DetailPage.aspx?imageID2=3783"> image 3783</a>. | | Chen-Hui Chen and Kenneth Poss, Duke University | 2,250 | 14,914,082 | 2,250 | Researchers sent the image an gave permission for public use (image has not been published, see below): From: Ken Poss, Ph.D. [kenneth.poss@duke.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Chen-Hui Chen, Ph.D. [chen-hui.chen@duke.edu] Monday, May 09, 2016 1:35 PM Hi Martin, Chen-Hui Chen has told me that the images now attached are similar to, but areNOT the images published by Developmental Cell. Hope these will be fine. Best, Ken From: Ken Poss, Ph.D. [kenneth.poss@duke.edu] Sent: Thursday, March 24, 2016 2:57 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Skinbow image for NIGMS Image Gallery? Dear Martin, Thanks for noticing our work. Yes this is fine with me. I am not sure what you would need from the journal, however. I?ve attached a higher-res image. The credit is Chen-Hui Chen, Developmental Cell 2016. Best, Ken Poss Kenneth Poss James B. Duke Professor Duke University Medical Center Durham, NC 27710 On Mar 24, 2016, at 2:06 PM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Poss, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we noticed your stunning image of multicolored fish skin cells in this recent news release ( http://today.duke.edu/2016/03/zebrafish ) describing your intriguing color-based technique to track individual cells. We would be very grateful if we could include your artwork in our Image Gallery on the NIGMS website (at https://images.nigms.nih.gov/). Images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in our image gallery in this way? | Kenneth Poss, Duke University | | | 2,250 | 2,175,856 | 2,250 | | 1,125 | 305,215 | 1,125 | Cells, Genes | | | | Chen-Hui Chen and Kenneth Poss, Duke University | | | A multicolored fish scale 2 | Active | Photograph | | Each of the tiny colored specs in this image is a cell on the surface of a fish scale. To better understand how wounds heal, scientists have inserted genes that make cells brightly glow in different colors into the skin cells of zebrafish, a fish often used in laboratory research. The colors enable the researchers to track each individual cell, for example, as it moves to the location of a cut or scrape over the course of several days. These technicolor fish endowed with glowing skin cells dubbed "skinbow" provide important insight into how tissues recover and regenerate after an injury. <Br><Br>For more information on skinbow fish, see the Biomedical Beat blog post <a href=" https://biobeat.nigms.nih.gov/2016/04/visualizing-skin-regeneration-in-real-time/">Visualizing Skin Regeneration in Real Time</a> and <a href=" http://today.duke.edu/2016/03/zebrafish">a press release from Duke University highlighting this research</a>. Related to <a href="/Pages/DetailPage.aspx?imageID2=3782"> image 3782</a>. | | Chen-Hui Chen and Kenneth Poss, Duke University | 2,250 | 580,053 | 2,250 | Researchers gave permission for public use (image as not been published, see below): From: Ken Poss, Ph.D. [kenneth.poss@duke.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Chen-Hui Chen, Ph.D. ? [chen-hui.chen@duke.edu]? Monday, May 09, 2016 1:35 PM Hi Martin, Chen-Hui Chen has told me that the images now attached are similar to, but are NOT the images published by Developmental Cell. Hope these will be fine. Best, Ken From: Ken Poss, Ph.D. [kenneth.poss@duke.edu] Sent: Thursday, March 24, 2016 2:57 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Skinbow image for NIGMS Image Gallery? Dear Martin, Thanks for noticing our work. Yes this is fine with me. I am not sure what you would need from the journal, however. I?ve attached a higher-res image. The credit is Chen-Hui Chen, Developmental Cell 2016. Best, Ken Poss Kenneth Poss James B. Duke Professor Duke University Medical Center Durham, NC 27710 On Mar 24, 2016, at 2:06 PM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Poss, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we noticed your stunning image of multicolored fish skin cells in this recent news release ( http://today.duke.edu/2016/03/zebrafish ) describing your intriguing color-based technique to track individual cells. We would be very grateful if we could include your artwork in our Image Gallery on the NIGMS website (at https://images.nigms.nih.gov/). Images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in our image gallery in this way? | Kenneth Poss, Duke University | | | 540 | 56,061 | 540 | | 1,125 | 188,770 | 1,125 | Cells, Genes | | | | Chen-Hui Chen and Kenneth Poss, Duke University | | | In vitro assembly of a cell-signaling pathway | Active | Photograph | | T cells are white blood cells that are important in defending the body against bacteria, viruses and other pathogens. Each T cell carries proteins, called T-cell receptors, on its surface that are activated when they come in contact with an invader. This activation sets in motion a cascade of biochemical changes inside the T cell to mount a defense against the invasion. Scientists have been interested for some time what happens after a T-cell receptor is activated. One obstacle has been to study how this signaling cascade, or pathway, proceeds inside T cells. <Br><Br>In this image, researchers have created a T-cell receptor pathway consisting of 12 proteins outside the cell on an artificial membrane. The image shows two key steps during the signaling process: clustering of a protein called linker for activation of T cells (LAT) (blue) and polymerization of the cytoskeleton protein actin (red). The findings show that the T-cell receptor signaling proteins self-organize into separate physical and biochemical compartments. This new system of studying molecular pathways outside the cells will enable scientists to better understand how the immune system combats microbes or other agents that cause infection. <Br><Br>To learn more how researchers assembled this T-cell receptor pathway, see <a href=" http://www.mbl.edu/blog/building-immunity-mbl-whitman-center-scientists-recreate-a-t-cell-receptor-signaling-pathway/">this press release from HHMI's Marine Biological Laboratory Whitman Center.</a> Related to <a href="/Pages/DetailPage.aspx?imageID2=3786">video 3786</a>. | | Xiaolei Su, HHMI Whitman Center of the Marine Biological Laboratory | 856 | 191,842 | 962 | Researchers supplied image and gave permission for public use: From: Michael Rosen [Michael.Rosen@UTSouthwestern.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Ron Vale ? [Ron.Vale@ucsf.edu]??; Su, Xiaolei ? [Xiaolei.Su@ucsf.edu]??; Jonathon Ditlev ? [Jonathon.Ditlev@UTSouthwestern.edu]? Dear Martin, Sorry for my mistake on my R01. The grant was just renewed, and I changed its focus to the actin dynamics work. The previous cycle did support some of the work in the Science paper. So you should feel free to use it. Yours, Mike From: Michael Rosen [Michael.Rosen@UTSouthwestern.edu] To:Vale, Ron ? [Ron.Vale@ucsf.edu]? Cc: Spiering, Martin (NIH/NIGMS) [C]?; Su, Xiaolei ? [Xiaolei.Su@ucsf.edu]??; Jonathon Ditlev ? [Jonathon.Ditlev@UTSouthwestern.edu]? Dear Martin, Thanks for your interest in our work, which I'd be very happy to have in the NIGMS image gallery. My portion of the work was funded by HHMI, a grant from the Welch Foundation (#I-1544), and an F32 postdoctoral fellowship to Jon Ditlev from NIGMS. I'm cc:ing Jon here, and he can give you the grant number on the F32. Like Ron, my NIH R01 grant funds different work in my lab, and is currently focused on understanding the dynamics of actin using NMR spectroscopy. Thanks again, Mike | Michael Rosen, HHMI University of Texas | immune system, immune response | | 206 | 12,039 | 231 | | 428 | 35,518 | 481 | Cells, Chemistry, Biochemistry, and Pharmacology | | | | Xiaolei Su, HHMI Whitman Center of the Marine Biological Laboratory | | | Yeast cells pack a punch | Active | Video | | Although they are tiny, microbes that are growing in confined spaces can generate a lot of pressure. In this video, yeast cells grow in a small chamber called a microfluidic bioreactor. As the cells multiply, they begin to bump into and squeeze each other, resulting in periodic bursts of cells moving into different parts of the chamber. The continually growing cells also generate a lot of pressure--the researchers conducting these experiments found that the pressure generated by the cells can be almost five times higher than that in a car tire--about 150 psi, or 10 times the atmospheric pressure. Occasionally, this pressure even caused the small reactor to burst. By tracking the growth of the yeast or other cells and measuring the mechanical forces generated, scientists can simulate microbial growth in various places such as water pumps, sewage lines or catheters to learn how damage to these devices can be prevented. To learn more how researchers used small bioreactors to gauge the pressure generated by growing microbes, see <a href=" http://news.berkeley.edu/2016/05/13/beware-of-microbial-traffic-jams/">this press release from UC Berkeley</a>. | | Jörn Hartung, UC Berkeley | | 7,890,079 | | Researchers supplied video and gave permission for public use: From: Oskar Hallatschek [ohallats@berkeley.edu] To: Spiering, Martin (NIH/NIGMS) [C] Dear Dr. Spiering, Sure! Thanks for reaching out. The below movie shows a device bursting due to the action of undomesticated yeast. Cells of this strain stick very strongly to one another, which promotes jamming ? The movie is quite long, so the Berkeley office took away the first ~20sec.s. Shall I ask them to provide the shortened version? Oskar Dear Dr. Hallatschek, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your intriguing video of yeast cells bursting out of a microfluidics chamber in a recent news release from Berkeley (at http://news.berkeley.edu/2016/05/13/beware-of-microbial-traffic-jams/) highlighting your work. We're interested in adding your short video to our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me the video file? Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | Oskar Hallatschek, UC Berkeley | | | | | | | | | | Cells | | 5/17/2016 | | Oskar Hallatschek, UC Berkeley | | | Movie of in vitro assembly of a cell-signaling pathway | Active | Video | | T cells are white blood cells that are important in defending the body against bacteria, viruses and other pathogens. Each T cell carries proteins, called T-cell receptors, on its surface that are activated when they come in contact with an invader. This activation sets in motion a cascade of biochemical changes inside the T cell to mount a defense against the invasion. Scientists have been interested for some time what happens after a T-cell receptor is activated. One obstacle has been to study how this signaling cascade, or pathway, proceeds inside T cells. <Br><Br>In this video, researchers have created a T-cell receptor pathway consisting of 12 proteins outside the cell on an artificial membrane. The video shows three key steps during the signaling process: phosphorylation of the T-cell receptor (green), clustering of a protein called linker for activation of T cells (LAT) (blue) and polymerization of the cytoskeleton protein actin (red). The findings show that the T-cell receptor signaling proteins self-organize into separate physical and biochemical compartments. This new system of studying molecular pathways outside the cells will enable scientists to better understand how the immune system combats microbes or other agents that cause infection. <Br><Br>To learn more how researchers assembled this T-cell receptor pathway, see <a href=" http://www.mbl.edu/blog/building-immunity-mbl-whitman-center-scientists-recreate-a-t-cell-receptor-signaling-pathway/">this press release from HHMI's Marine Biological Laboratory Whitman Center.</a> Related to <a href="/Pages/DetailPage.aspx?imageID2=3787">image 3787</a>. | | Xiaolei Su, HHMI Whitman Center of the Marine Biological Laboratory | | 829,638 | | Researchers supplied video and gave permission for public use: From: Michael Rosen [Michael.Rosen@UTSouthwestern.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Ron Vale [Ron.Vale@ucsf.edu]; Su, Xiaolei [Xiaolei.Su@ucsf.edu]; Jonathon Ditlev [Jonathon.Ditlev@UTSouthwestern.edu] Dear Martin, Sorry for my mistake on my R01. The grant was just renewed, and I changed its focus to the actin dynamics work. The previous cycle did support some of the work in the Science paper. So you should feel free to use it. Yours, Mike From: Michael Rosen [Michael.Rosen@UTSouthwestern.edu] To:Vale, Ron [Ron.Vale@ucsf.edu] Cc: Spiering, Martin (NIH/NIGMS) [C]; Su, Xiaolei [Xiaolei.Su@ucsf.edu]; Jonathon Ditlev [Jonathon.Ditlev@UTSouthwestern.edu] Dear Martin, Thanks for your interest in our work, which I'd be very happy to have in the NIGMS image gallery. My portion of the work was funded by HHMI, a grant from the Welch Foundation (#I-1544), and an F32 postdoctoral fellowship to Jon Ditlev from NIGMS. I'm cc:ing Jon here, and he can give you the grant number on the F32. Like Ron, my NIH R01 grant funds different work in my lab, and is currently focused on understanding the dynamics of actin using NMR spectroscopy. Thanks again, Mike | Michael Rosen, HHMI University of Texas | immune system, immune response | | | | | | | | | Cells, Chemistry, Biochemistry, and Pharmacology | | | | Xiaolei Su, HHMI Whitman Center of the Marine Biological Laboratory | | | Nucleolus subcompartments spontaneously self-assemble 1 | Active | Video | | The nucleolus is a small but very important protein complex located in the cell's nucleus. It forms on the chromosomes at the location where the genes for the RNAs are that make up the structure of the ribosome, the indispensable cellular machine that makes proteins from messenger RNAs.<Br><Br> However, how the nucleolus grows and maintains its structure has puzzled scientists for some time. It turns out that even though it looks like a simple liquid blob, it's rather well-organized, consisting of three distinct layers: the fibrillar center, where the RNA polymerase is active; the dense fibrillar component, which is enriched in the protein fibrillarin; and the granular component, which contains a protein called nucleophosmin. Researchers have now discovered that this multilayer structure of the nucleolus arises from difference in how the proteins in each compartment mix with water and with each other. These differences let them readily separate from each other into the three nucleolus compartments. <Br><Br>This video of nucleoli in the eggs of a commonly used lab animal, the frog <i>Xenopus laevis</i>, shows how each of the compartments (the granular component is shown in red, the fibrillarin in yellow-green, and the fibrillar center in blue) spontaneously fuse with each other on encounter without mixing with the other compartments. For more details on this research, see <a href=" http://www.princeton.edu/main/news/archive/S46/35/80M01/?section=topstories">this press release from Princeton</a>. Related to <a href="/Pages/DetailPage.aspx?imageID2=3791"> video 3791</a>, <a href="/Pages/DetailPage.aspx?imageID2=3792"> image 3792</a> and <a href="/Pages/DetailPage.aspx?imageID2=3793"> image 3793</a>. | | Nilesh Vaidya and Clifford Brangwynne, Princeton University | | 763,656 | | Researchers supplied video and gave permission for public use: From: Nilesh Vaidya [nvaidya@princeton.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Clifford P. Brangwynne [cbrangwy@princeton.edu] Thursday, May 26, 2016 10:33 AM Dear Martin, I am a co-first author of the article published on the journal Cell on how the nucleolus self-organizes. I was informed by my advisor Cliff Brangwynne that you are interested in including some of the images and videos of the nucleolus reported in our paper in your image gallery. I have attached few images (two for native and two for drug treated nucleoli) and couple of movies (fusion of nucleoli following drug treatment) with this email that are not published. For all images and movies, granular component (GC) is visualized with NPM1 (red), dense fibrillar component (DFC) with FIB1 (green), and fibrillar center (FC) with POLR1E (blue). Please let me know if you have any questions. Thank you. Best, Nilesh Vaidya Postdoctoral fellow Brangwynne lab Chemical and Biological Engineering Princeton University From: "Spiering, Martin (NIH/NIGMS) [C]" < martin.spiering@nih.gov> Subject: Videos/images of nucleolus for NIGMS image gallery? Date: May 23, 2016 at 12:37:21 PM EDT To: " cbrangwy@princeton.edu" < cbrangwy@princeton.edu> Dear Dr. Brangwynne, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your exciting new findings of how the nucleolus self-organizes, which were reported in a recent news release (at http://www.princeton.edu/main/news/archive/S46/35/80M01/?section=topstories) highlighting your work. We're very interested in including some of your striking images and videos of the nucleolus reported in the paper into our image gallery (at https://images.nigms.nih.gov/) to bring your important work to broader public attention. | Clifford Brangwynne, Princeton University | | | | | | | | | | Cells, Chemistry, Biochemistry, and Pharmacology, Genes | | | | Nilesh Vaidya, Princeton University | | | Nucleolus subcompartments spontaneously self-assemble 3 | Active | Photograph | | What looks a little like distant planets with some mysterious surface features are actually assemblies of proteins normally found in the cell's nucleolus, a small but very important protein complex located in the cell's nucleus. It forms on the chromosomes at the location where the genes for the RNAs are that make up the structure of the ribosome, the indispensable cellular machine that makes proteins from messenger RNAs. <Br><Br>However, how the nucleolus grows and maintains its structure has puzzled scientists for some time. It turns out that even though it looks like a simple liquid blob, it's rather well-organized, consisting of three distinct layers: the fibrillar center, where the RNA polymerase is active; the dense fibrillar component, which is enriched in the protein fibrillarin; and the granular component, which contains a protein called nucleophosmin. Researchers have now discovered that this multilayer structure of the nucleolus arises from differences in how the proteins in each compartment mix with water and with each other. These differences let the proteins readily separate from each other into the three nucleolus compartments.<Br><Br> This photo of nucleolus proteins in the eggs of a commonly used lab animal, the frog <i>Xenopus laevis</i>, shows each of the nucleolus compartments (the granular component is shown in red, the fibrillarin in yellow-green, and the fibrillar center in blue). The researchers have found that these compartments spontaneously fuse with each other on encounter without mixing with the other compartments. <Br><Br> For more details on this research, see <a href=" http://www.princeton.edu/main/news/archive/S46/35/80M01/?section=topstories">this press release from Princeton</a>. Related to <a href="/Pages/DetailPage.aspx?imageID2=3789"> video 3789</a>, <a href="/Pages/DetailPage.aspx?imageID2=3791"> video 3791</a> and <a href="/Pages/DetailPage.aspx?imageID2=3793"> image 3793</a>. | | Nilesh Vaidya and Clifford Brangwynne, Princeton University | 385 | 212,243 | 431 | Researchers supplied video and gave permission for public use: From: Nilesh Vaidya [nvaidya@princeton.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Clifford P. Brangwynne [cbrangwy@princeton.edu] Thursday, May 26, 2016 10:33 AM Dear Martin, I am a co-first author of the article published on the journal Cell on how the nucleolus self-organizes. I was informed by my advisor Cliff Brangwynne that you are interested in including some of the images and videos of the nucleolus reported in our paper in your image gallery. I have attached few images (two for native and two for drug treated nucleoli) and couple of movies (fusion of nucleoli following drug treatment) with this email that are not published. For all images and movies, granular component (GC) is visualized with NPM1 (red), dense fibrillar component (DFC) with FIB1 (green), and fibrillar center (FC) with POLR1E (blue). Please let me know if you have any questions. Thank you. Best, Nilesh Vaidya Postdoctoral fellow Brangwynne lab Chemical and Biological Engineering Princeton University From: "Spiering, Martin (NIH/NIGMS) [C]" < martin.spiering@nih.gov> Subject: Videos/images of nucleolus for NIGMS image gallery? Date: May 23, 2016 at 12:37:21 PM EDT To: " cbrangwy@princeton.edu" < cbrangwy@princeton.edu> Dear Dr. Brangwynne, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your exciting new findings of how the nucleolus self-organizes, which were reported in a recent news release (at http://www.princeton.edu/main/news/archive/S46/35/80M01/?section=topstories) highlighting your work. We're very interested in including some of your striking images and videos of the nucleolus reported in the paper into our image gallery (at https://images.nigms.nih.gov/) to bring your important work to broader public attention. | Clifford Brangwynne, Princeton University | | | 92 | 13,793 | 103 | | 193 | 59,677 | 216 | Cells, Genes | | | | Nilesh Vaidya, Princeton University | | | Nucleolus subcompartments spontaneously self-assemble 2 | Active | Video | | The nucleolus is a small but very important protein complex located in the cell's nucleus. It forms on the chromosomes at the location where the genes for the RNAs are that make up the structure of the ribosome, the indispensable cellular machine that makes proteins from messenger RNAs. <Br><Br>However, how the nucleolus grows and maintains its structure has puzzled scientists for some time. It turns out that even though it looks like a simple liquid blob, it's rather well-organized, consisting of three distinct layers: the fibrillar center, where the RNA polymerase is active; the dense fibrillar component, which is enriched in the protein fibrillarin; and the granular component, which contains a protein called nucleophosmin. Researchers have now discovered that this multilayer structure of the nucleolus arises from differences in how the proteins in each compartment mix with water and with each other. These differences let the proteins readily separate from each other into the three nucleolus compartments. <Br><Br>This video of nucleoli in the eggs of a commonly used lab animal, the frog <i>Xenopus laevis</i>, shows how each of the compartments (the granular component is shown in red, the fibrillarin in yellow-green, and the fibrillar center in blue) spontaneously fuse with each other on encounter without mixing with the other compartments. <Br><Br>For more details on this research, see <a href=" http://www.princeton.edu/main/news/archive/S46/35/80M01/?section=topstories">this press release from Princeton</a>. Related to <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3789">video 3789</a>, <a href="/Pages/DetailPage.aspx?imageID2=3792"> image 3792</a> and <a href="/Pages/DetailPage.aspx?imageID2=3793">image 3793</a>. | | Nilesh Vaidya and Clifford Brangwynne, Princeton University | | 323,743 | | Researchers supplied video and gave permission for public use: From: Nilesh Vaidya [nvaidya@princeton.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Clifford P. Brangwynne [cbrangwy@princeton.edu] Thursday, May 26, 2016 10:33 AM Dear Martin, I am a co-first author of the article published on the journal Cell on how the nucleolus self-organizes. I was informed by my advisor Cliff Brangwynne that you are interested in including some of the images and videos of the nucleolus reported in our paper in your image gallery. I have attached few images (two for native and two for drug treated nucleoli) and couple of movies (fusion of nucleoli following drug treatment) with this email that are not published. For all images and movies, granular component (GC) is visualized with NPM1 (red), dense fibrillar component (DFC) with FIB1 (green), and fibrillar center (FC) with POLR1E (blue). Please let me know if you have any questions. Thank you. Best, Nilesh Vaidya Postdoctoral fellow Brangwynne lab Chemical and Biological Engineering Princeton University From: "Spiering, Martin (NIH/NIGMS) [C]" < martin.spiering@nih.gov> Subject: Videos/images of nucleolus for NIGMS image gallery? Date: May 23, 2016 at 12:37:21 PM EDT To: " cbrangwy@princeton.edu" < cbrangwy@princeton.edu> Dear Dr. Brangwynne, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your exciting new findings of how the nucleolus self-organizes, which were reported in a recent news release (at http://www.princeton.edu/main/news/archive/S46/35/80M01/?section=topstories) highlighting your work. We're very interested in including some of your striking images and videos of the nucleolus reported in the paper into our image gallery (at https://images.nigms.nih.gov/) to bring your important work to broader public attention. | Clifford Brangwynne, Princeton University | | | | | | | | | | Cells, Chemistry, Biochemistry, and Pharmacology, Genes | | | | Nilesh Vaidya, Princeton University | | | Nucleolus subcompartments spontaneously self-assemble 4 | Active | Photograph | | What looks a little like distant planets with some mysterious surface features are actually assemblies of proteins normally found in the cell's nucleolus, a small but very important protein complex located in the cell's nucleus. It forms on the chromosomes at the location where the genes for the RNAs are that make up the structure of the ribosome, the indispensable cellular machine that makes proteins from messenger RNAs. <Br><Br>However, how the nucleolus grows and maintains its structure has puzzled scientists for some time. It turns out that even though it looks like a simple liquid blob, it's rather well-organized, consisting of three distinct layers: the fibrillar center, where the RNA polymerase is active; the dense fibrillar component, which is enriched in the protein fibrillarin; and the granular component, which contains a protein called nucleophosmin. Researchers have now discovered that this multilayer structure of the nucleolus arises from differences in how the proteins in each compartment mix with water and with each other. These differences let the proteins readily separate from each other into the three nucleolus compartments. <Br><Br>This photo of nucleolus proteins in the eggs of a commonly used lab animal, the frog <i>Xenopus laevis</i>, shows each of the nucleolus compartments (the granular component is shown in red, the fibrillarin in yellow-green, and the fibrillar center in blue). The researchers have found that these compartments spontaneously fuse with each other on encounter without mixing with the other compartments. <Br><Br> For more details on this research, see <a href=" http://www.princeton.edu/main/news/archive/S46/35/80M01/?section=topstories">this press release from Princeton</a>. Related to <a href="/Pages/DetailPage.aspx?imageID2=3789"> video 3789</a>, <a href="/Pages/DetailPage.aspx?imageID2=3791"> video 3791</a> and <a href="/Pages/DetailPage.aspx?imageID2=3792"> image 3792</a>. | | Nilesh Vaidya and Clifford Brangwynne, Princeton University | 445 | 247,544 | 497 | Researchers supplied video and gave permission for public use: From: Nilesh Vaidya [nvaidya@princeton.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Clifford P. Brangwynne [cbrangwy@princeton.edu] Thursday, May 26, 2016 10:33 AM Dear Martin, I am a co-first author of the article published on the journal Cell on how the nucleolus self-organizes. I was informed by my advisor Cliff Brangwynne that you are interested in including some of the images and videos of the nucleolus reported in our paper in your image gallery. I have attached few images (two for native and two for drug treated nucleoli) and couple of movies (fusion of nucleoli following drug treatment) with this email that are not published. For all images and movies, granular component (GC) is visualized with NPM1 (red), dense fibrillar component (DFC) with FIB1 (green), and fibrillar center (FC) with POLR1E (blue). Please let me know if you have any questions. Thank you. Best, Nilesh Vaidya Postdoctoral fellow Brangwynne lab Chemical and Biological Engineering Princeton University From: "Spiering, Martin (NIH/NIGMS) [C]" < martin.spiering@nih.gov> Subject: Videos/images of nucleolus for NIGMS image gallery? Date: May 23, 2016 at 12:37:21 PM EDT To: " cbrangwy@princeton.edu" < cbrangwy@princeton.edu> Dear Dr. Brangwynne, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your exciting new findings of how the nucleolus self-organizes, which were reported in a recent news release (at http://www.princeton.edu/main/news/archive/S46/35/80M01/?section=topstories) highlighting your work. We're very interested in including some of your striking images and videos of the nucleolus reported in the paper into our image gallery (at https://images.nigms.nih.gov/) to bring your important work to broader public attention. | Clifford Brangwynne, Princeton University | | | 107 | 28,663 | 119 | | 223 | 110,588 | 249 | Cells, Genes | | | | Nilesh Vaidya, Princeton University | | | Assembly of the HIV capsid | Active | Illustration | | The HIV capsid is a pear-shaped structure that is made of proteins the virus needs to mature and become infective. The capsid is inside the virus and delivers the virus' genetic information into a human cell. To better understand how the HIV capsid does this feat, scientists have used computer programs to simulate its assembly. This image shows a series of snapshots of the steps that grow the HIV capsid. A model of a complete capsid is shown on the far right of the image for comparison; the green, blue and red colors indicate different configurations of the capsid protein that make up the capsid “shell.” The bar in the left corner represents a length of 20 nanometers, which is less than a tenth the size of the smallest bacterium. Computer models like this also may be used to reconstruct the assembly of the capsids of other important viruses, such as Ebola or the Zika virus. The studies reporting this research were published in <a href=" http://www.nature.com/ncomms/2016/160513/ncomms11568/full/ncomms11568.html"><i>Nature Communications</i></a> and <a href=" http://www.nature.com/nature/journal/v469/n7330/full/nature09640.html"><i>Nature</i></a>. To learn more about how researchers used computer simulations to track the assembly of the HIV capsid, see <a href=" https://news.uchicago.edu/article/2016/06/14/simulations-describe-hivs-diabolical-delivery-device">this press release from the University of Chicago</a>. | | John Grime and Gregory Voth, The University of Chicago | 4,741 | 2,399,935 | 11,754 | John Grime [jgrime@uchicago.edu] Actions To: Spiering, Martin (NIH/NIGMS) [C] Cc: Gregory A. Voth [gavoth@uchicago.edu] Attachments: (2)Download all attachments ForNIGMS_TransparentBackgr~1.pdf (5 MB)[Open as Web Page]; ForNSF_TransparentBackground.pdf (5 MB)[Open as Web Page] Inbox Friday, June 17, 2016 1:19 PM Wonderful! I’ve attached two high-res images of the same form as the one on the website you linked. I saved one with an explicitly transparent background, in case that may be more convenient for your uses. Please note: there are two citations involved here (Nature Communications 2016, and Nature 2011)! The full citations are given in the release form I emailed to you previously. We would greatly appreciate your care in ensuring both citations are included! Cheers, J. On Jun 17, 2016, at 11:58 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Hello John, I've been told the release form represents no conflict, so the illustration can also be posted on the NIGMS image gallery. We'll also make an internal note that NSF has the same use privileges. Thanks! Martin From: John Grime [jgrime@uchicago.edu] Sent: Friday, June 17, 2016 12:24 PM To: Spiering, Martin (NIH/NIGMS) [C] Cc: Gregory A. Voth Subject: Re: HIV capsid illustration for NIGMS image gallery? Hi Martin, I’ve attached the relase form we sent to the NSF for your perusal. J. > On Jun 17, 2016, at 11:10 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: > > Hello John, > > Yes, a modified version would be excellent. Otherwise, I'll also need to ask the publisher for permission to use the image. Unlike some other publishers, NPG is usually pretty generous with granting permissions, but it can be a little time consuming and that they waive any fees is not guaranteed. > > However, I don't want to take up too much of your time. So if modifying the graphic entails quite a bit of work, please send me what you have, and I'll ask for permission from the journal via RightsLink. > > Many thanks, > Martin > ________________________________________ > From: John Grime [jgrime@uchicago.edu] > Sent: Friday, June 17, 2016 12:01 PM > To: Spiering, Martin (NIH/NIGMS) [C] > Cc: Gregory A. Voth > Subject: Re: HIV capsid illustration for NIGMS image gallery? Hi Martin, We provided the image shown in the news release to the NSF, which included signing a release form. Can I assume that giving you a high-res version of that image will not cause any problems in terms of copyright etc? We’d rather not have the headache of upsetting anyint at either the NSF or the NIH over such matters! I can of course provide a high-res version of that file, albeit somewhat modified so it is in principle unique to NIGMS? J. From: Gregory A. Voth [gavoth@uchicago.edu] Sent: Friday, June 17, 2016 11:40 AM To: Spiering, Martin (NIH/NIGMS) [C] Cc: John Grime Subject: Re: HIV capsid illustration for NIGMS image gallery? Dear Martin, Yes, of course. John Grime, cc’ed here, will provide you with the image. It is a composite of images from two articles that will need to be acknowledged and cited. Best wishes, Greg Voth Gregory A. Voth, Ph.D. Haig P. Papazian Distinguished Service Professor Department of Chemistry, James Franck Institute, Institute for Biophysical Dynamics, and Computation Institute Faculty Guest Researcher, Los Alamos National Laboratory Department of Chemistry The University of Chicago 5735 S. Ellis Avenue Chicago, Illinois 60637 Phone: 773-702-9092 Fax: 773-795-9106 Administrative Assistant: 773-702-9096 Email: gavoth@uchicago.edu Group Web Site: vothgroup.uchicago.edu ___________________________________________________________________ From: "Spiering, Martin (NIH/NIGMS) [C]" < martin.spiering@nih.gov> Date: Friday, June 17, 2016 at 10:35 AM To: Greg Voth < gavoth@uchicago.edu> Subject: HIV capsid illustration for NIGMS image gallery? Dear Dr. Voth, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your striking illustration of the HIV capsid assembly in a recent news release (at https://news.uchicago.edu/article/2016/06/14/simulations-describe-hivs-diabolical-delivery-device) highlighting your groundbreaking work. We're interested in including your illustration into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me a high-resolution and, if possible, unpublished version of the image? Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | Gregory Voth, The University of Chicago | capsid HIV AIDS virus | | 1,185 | 313,778 | 2,937 | | 2,370 | 1,221,104 | 5,875 | Cells, Genes, Molecular Structures, Tools and Techniques | | | NSF also has permission for use: For Official NSF Use Only Thank you for submitting your multimedia material (such as still image, photo, illustration, animation, video and/or audio) for use by the National Science Foundation (NSF). This form serves to verify that you own the copyright and hereby grant NSF permission to use your material in the manner described below. In view of your rights under U.S. Copyright laws, please check one of the following options, sign below and email to your contact at NSF: NSF and External Use By checking this option and signing below, you certify that you hereby grant NSF permission to use and distribute your multimedia material described below on a royalty-free basis for news and public-information purposes at NSF’s discretion. Such uses include, but are not limited to, posting the material on the NSF Multimedia Gallery Web site (thereby making it generally available to such outlets as news organizations, universities, teachers and the general public) and distributing the material to other Web sites for educational and/or informational purposes. NSF agrees to post in the Multimedia Gallery any restrictions stated on this form. NSF News or Public-Information Use Only By checking this option and signing below, you certify that you hereby grant NSF permission to use your multimedia material only in conjunction with distribution of official agency news or public-information products (including press releases and speeches by NSF officers) about NSF-supported research and education, and for no other purposes. I, John Grime of The University of Chicago Full Name Name of Organization hold the copyright on this material and understand and agree to the terms of this form where I have indicated. Signature JOHN GRIME Date 06/16/2016 (Your digital/typed signature on this line substitutes your hand-written signature.) Address Email jgrime@uchicago.edu Phone (+1) 872 220 1232 Information about the Multimedia Material NSF asks you to provide as much information as possible about each of your multimedia files, including descriptions, suggested credit and date. Please provide the highest available resolution of each item. If there are any restrictions on the use of the material, please specify these clearly. File Name(s) Please list all file names. ForNSF.pdf ForNSF_TransparentBackground.pdf Brief Description For each multimedia item, please include a brief non-technical description, which will be used for writing captions. Use a separate page for additional space. These snapshots from a computer simulation shows steps in the assembly of the HIV-1 capsid, a pear-shaped capsule made of proteins that the virus needs in order to mature and become infective. The scale bar represents 20 nanometers, which is less than a tenth the size of the smallest bacterium. A model of a complete capsid suggested previously is shown on the far right of the image for comparison. (Citations: Nature Communications, doi: 10.1038/ncomms11568 and Nature 469:424-427 2011) Keywords Include any relevant keywords. Use a separate page for additional space. Computer simulation, HIV, virus, capsid, molecular dynamics Suggested Credit Write how you would prefer to identify the copyright holder. (Examples: “John Smith, Best University” or “John Smith, Biology Department, Best University”) J. M. A. Grime and G. A. Voth, The University of Chicago IMPORTANT: ENSURE THE FOLLOWING MANUSCRIPTS ARE BOTH CITED AS APPROPRIATE: Grime and co-workers, Nature Communications, doi: 10.1038/ncomms11568 Pornillos and co-workers, Nature 469:424-427 2011 Related URL(s) http://www.nature.com/ncomms/2016/160513/ncomms11568/full/ncomms11568.html Does This Material Show NSF-Supported Research? Yes No If yes, please explain and, if possible, provide the NSF grant number. NSF awards OCI-0725070 and ACI-1238993 (Blue Waters supercomputing resource at the NCSA), and “Ultra-Coarse-Grained Simulations of Biomolecular Processes at the Petascale” Petascale Computing Resource Allocation (PRAC) support by the National Science Foundation (OCI-1440027). Grant # OCI-0725070, ACI-1238993, OCI-1440027 Date Of Material Please narrow down the creation date as closely as possible, even if you can give only the decade. June 15th 2016 Restrictions for Use Please note, if there is a restriction to use this multimedia material, NSF will gladly include the information on the NSF Web site. However, since the NSF Web site is open to the public and NSF does not monitor use of the material, NSF cannot guarantee that people using the site will adhere to restrictions posted. | John Grime and Gregory Voth, The University of Chicago | | | Dynamic cryo-EM model of the human transcription preinitiation complex | Active | Video | | Gene transcription is a process by which information encoded in DNA is transcribed into RNA. It's essential for all life and requires the activity of proteins, called transcription factors, that detect where in a DNA strand transcription should start. In eukaryotes (i.e., those that have a nucleus and mitochondria), a protein complex comprising 14 different proteins is responsible for sniffing out transcription start sites and starting the process. This complex represents the core machinery to which an enzyme, named RNA polymerase, can bind to and read the DNA and transcribe it to RNA. Scientists have used cryo-electron microscopy (cryo-EM) to visualize the TFIID-RNA polymerase-DNA complex in unprecedented detail. This animation shows the different TFIID components as they contact DNA and recruit the RNA polymerase for gene transcription. <br><br>To learn more about the research that has shed new light on gene transcription, see this <a href=" http://newscenter.lbl.gov/2016/03/23/unlocking-the-secrets-of-gene-expression/">news release from Berkeley Lab</a>. <br><br>Related to <a href=" https://images.nigms.nih.gov/Pages/DetailPage.aspx?imageid2=3766">image 3766</a>. | | Robert Louder, Berkeley Lab | | 24,919,131 | | Researchers gave permissions for public use: Eva Nogales [enogales@lbl.gov] Thursday, March 24, 2016 2:24 PM Dear Martin, This is great! We are delighted. I will be sending you a few, so that you can choose. We can also send you a video, if you want. Just let me know. Can you let me know if these can be the same as in the publication (it will simplify things if I don't have to make new figures!) Thanks, Eva Spiering, Martin (NIH/NIGMS) [C] To: enogales@lbl.gov Thursday, March 24, 2016 11:40 AM Dear Dr. Nogales, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I am reaching out to you because we noticed your very striking image of the TFIID complex on DNA (see attached) in this recent news release ( http://newscenter.lbl.gov/2016/03/23/unlocking-the-secrets-of-gene-expression/) describing your groundbreaking research advance on revealing the detailed structure of this complex. We would be very grateful if we could include your artwork in our Image Gallery on the NIGMS website (at https://images.nigms.nih.gov/). Images and videos in the NIGMS Image Gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in our image gallery in this way? If so, could you send me a high-resolution version of your image, if available? Please let me know if you have any questions. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS martin.spiering@nih.gov | Eva Nogales, Berkeley Lab | transcription transcriptional activation TAF transcription factors RNA polymerase | | | | | | | | | Genes, Molecular Structures, Tools and Techniques | | | | Eva Nogales, Berkeley Lab | | | Genetically identical mycobacteria respond differently to antibiotic 1 | Active | Photograph | | Antibiotic resistance in microbes is a serious health concern. So researchers have turned their attention to how bacteria undo the action of some antibiotics. Here, scientists set out to find the conditions that help individual bacterial cells survive in the presence of the antibiotic rifampicin. The research team used <i>Mycobacterium smegmatis</i>, a more harmless relative of <i>Mycobacterium tuberculosis</i>, which infects the lung and other organs and causes serious disease. <Br><Br>In this image, genetically identical mycobacteria are growing in a miniature growth chamber called a microfluidic chamber. Using live imaging, the researchers found that individual mycobacteria will respond differently to the antibiotic, depending on the growth stage and other timing factors. The researchers used genetic tagging with green fluorescent protein to distinguish cells that can resist rifampicin and those that cannot. With this gene tag, cells tolerant of the antibiotic light up in green and those that are susceptible in violet, enabling the team to monitor the cells' responses in real time. <Br><Br> To learn more about how the researchers studied antibiotic resistance in mycobacteria, see <a href=" http://now.tufts.edu/news-releases/individual-mycobacteria-respond-differently-antibiotics-based-growth-and-timing">this news release from Tufts University</a>. Related to <a href="/Pages/DetailPage.aspx?imageID2=5752">video 5752</a>. | | Bree Aldridge, Tufts University | 1,024 | 3,145,882 | 1,024 | Researchers gave permission for public use: From: Bree Aldridge [Bree.Aldridge@tufts.edu] Wednesday, July 06, 2016 2:34 PM Dear Dr. Spiering, Thank you! I'd be very happy to have our work highlighted in the gallery. Please find the images attached. Best, Bree From: Spiering, Martin (NIH/NIGMS) [C] To: bree.aldridge@tufts.edu Wednesday, July 06, 2016 7:43 AM Dear Dr. Aldridge, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your intriguing image and video of growing mycobacteria in a recent news release (at http://now.tufts.edu/news-releases/individual-mycobacteria-respond-differently-antibiotics-based-growth-and-timing ) highlighting your work. We're interested in including both into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me the video file and a high-resolution file of the still image? Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | Bree Aldridge, Tufts University | antibiotic resistance | | 308 | 108,664 | 308 | | 512 | 72,285 | 512 | Cells, Chemistry, Biochemistry, and Pharmacology, Genes | | | | Bree Aldridge, Tufts University | | | Genetically identical mycobacteria respond differently to antibiotic 2 | Active | Video | | Antibiotic resistance in microbes is a serious health concern. So researchers have turned their attention to how bacteria undo the action of some antibiotics. Here, scientists set out to find the conditions that help individual bacterial cells survive in the presence of the antibiotic rifampicin. The research team used <i>Mycobacterium smegmatis</i>, a more harmless relative of <i>Mycobacterium tuberculosis</i>, which infects the lung and other organs to cause serious disease.<Br><Br> In this video, genetically identical mycobacteria are growing in a miniature growth chamber called a microfluidic chamber. Using live imaging, the researchers found that individual mycobacteria will respond differently to the antibiotic, depending on the growth stage and other timing factors. The researchers used genetic tagging with green fluorescent protein to distinguish cells that can resist rifampicin and those that cannot. With this gene tag, cells tolerant of the antibiotic light up in green and those that are susceptible in violet, enabling the team to monitor the cells' responses in real time. <Br><Br> To learn more about how the researchers studied antibiotic resistance in mycobacteria, see <a href=" http://now.tufts.edu/news-releases/individual-mycobacteria-respond-differently-antibiotics-based-growth-and-timing">this news release from Tufts University</a>. Related to <a href="/Pages/DetailPage.aspx?imageID2=5751">image 5751</a>. | | Bree Aldridge, Tufts University | | 2,014,361 | | From: Bree Aldridge [Bree.Aldridge@tufts.edu] Wednesday, July 06, 2016 2:34 PM Dear Dr. Spiering, Thank you! I'd be very happy to have our work highlighted in the gallery. Please find the images attached. Best, Bree From: Spiering, Martin (NIH/NIGMS) [C] To: bree.aldridge@tufts.edu Wednesday, July 06, 2016 7:43 AM Dear Dr. Aldridge, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your intriguing image and video of growing mycobacteria in a recent news release (at http://now.tufts.edu/news-releases/individual-mycobacteria-respond-differently-antibiotics-based-growth-and-timing ) highlighting your work. We're interested in including both into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me the video file and a high-resolution file of the still image? Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | Bree Aldridge, Tufts University | antibiotic rifampicin Mycobacterium | | 339 | 60,911 | 308 | | | | | Cells, Chemistry, Biochemistry, and Pharmacology, Genes | | | | Bree Aldridge, Tufts University | | | Clathrin-mediated endocytosis | Active | Video | | Endocytosis is the process by which cells are able to take up membrane and extracellular materials through the formation of a small intracellular bubble, called a vesicle. This process, called membrane budding, is generally by a coating of proteins. This protein coat helps both to deform the membrane and to concentrate specific proteins inside the newly forming vesicle. Clathrin is a coat protein that functions in receptor-mediated endocytosis events at the plasma membrane. This animation shows the process of clathrin-mediated endocytosis. An iron-transport protein called transferrin (blue) is bound to its receptor (purple) on the exterior cell membrane. Inside the cell, a clathrin cage (shown in white/beige) assembles through interactions with membrane-bound adaptor proteins (green), causing the cell membrane to begin bending. The adaptor proteins also bind to receptors for transferrin, capturing them in the growing vesicle. Molecules of a protein called dynamin (purple) are then recruited to the neck of the vesicle and are involved in separating the membranes of the cell and the vesicle. Soon after the vesicle has budded off the membrane, the clathrin cage is disassembled. This disassembly is mediated by another protein called HSC70 (yellow), and its cofactor protein auxilin (orange). | | Tomas Kirchhausen, Harvard Medical School, and Janet Iwasa | | 66,468,304 | | Researchers gave permission for public use: From: Janet Iwasa [ mailto:jiwasa@gmail.com] Sent: Tuesday, February 02, 2016 4:02 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] < MachaleA@nigms.nih.gov> Subject: Re: NIGMS animations--Kirchhausen OK for public domain? Hi Alisa, Tom says it's fine to put into the public domain. I'd prefer if Tom's name were first (Tomas Kirchhausen (Harvard Medical School) and Janet Iwasa). I didn't make it while here at Utah, so maybe best to leave out my affiliation? For Jennifer Doudna's animation, it was largely managed (and funded?) by Marsha Fenner (mwfenner.igi@gmail.com), who is the director of the Innovative Genomics Institute at Berkeley. I imagine she might be the right person to ask about permissions! Janet On Tue, Feb 2, 2016 at 1:49 PM, Machalek, Alisa Zapp (NIH/NIGMS) [E] < MachaleA@nigms.nih.gov>wrote: Terrific! Thanks so much. Do we have permission to put the Kirchhausen one into the public domain? If so, how should the credit read: Janet Iwasa (University of Utah) and Tomas Kirchhausen (Harvard Medical School) or something else? We’ll need to check to see if we have permission to use the Elde one (Science supplementary material) and the Doudna commissioned one. If I have other follow-up questions, I’ll let you know (though not this week, as I’m struggling with something else). Best, Alisa P.S. I’m a surprised to see that we’ve profiled three of the group in our Biomedical Beat blog--you, Nels and Jennifer. Here I thought we were profiling diverse scientists. Apparently, the special Iwasa brand of science/art magic, you’ve managed to unite them! From: Janet Iwasa [ mailto:jiwasa@gmail.com] Sent: Tuesday, February 02, 2016 3:19 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: NIGMS seeking molecular animations--yours and/or others Hi Alisa, One more to add to the list: https://www.dropbox.com/s/pyu9csjz4fyfe44/endocytosis_dynaminUpdate_June2015.mov?dl=0 This one is of clathrin-mediated endocystosis with Tomas Krichhausen (Harvard Medical School). I think that's all the animations for now! best, Janet | Tomas Kirchhausen, Harvard Medical School, and Janet Iwasa | endocytosis endosome vesicle clathrin | | | | | | | | | Cells, Molecular Structures | | | | Janet Iwasa, University of Utah | | | Autofluorescent xanthophores in zebrafish skin | Active | Photograph | | Pigment cells are cells that give skin its color. In fishes and amphibians, like frogs and salamanders, pigment cells are responsible for the characteristic skin patterns that help these organisms to blend into their surroundings or attract mates. The pigment cells are derived from neural crest cells, which are cells originating from the neural tube in the early embryo. This image shows pigment cells called xanthophores in the skin of zebrafish; the cells glow (autofluoresce) brightly under light giving the fish skin a shiny, lively appearance. Investigating pigment cell formation and migration in animals helps answer important fundamental questions about the factors that control pigmentation in the skin of animals, including humans. Related to images <a href="/Pages/DetailPage.aspx?imageID2=5754">5754</a>, <a href="/Pages/DetailPage.aspx?imageID2=5756">5756</a>, <a href="/Pages/DetailPage.aspx?imageID2=5757">5757</a> and <a href="/Pages/DetailPage.aspx?imageID2=5758">5758</a>. | | David Parichy, University of Washington | 1,030 | 17,543,372 | 1,300 | Researchers gave permission for public use: From: David Parichy [dparichy@uw.edu] Sent: Wednesday, July 06, 2016 2:29 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Images for NIGMS Image Gallery? Hi Martin Thanks for the enquiry. I’d be happy to make some high res versions available to you… Are there any on the website that you’re particularly interested in? How many would you like to select from? When do you need them by? Do you want some of videos from NIGMS grants as well? Best Dave On Jul 6, 2016, at 11:25 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Parichy, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we have noticed your stunning gallery of images on your website (at http://faculty.washington.edu/dparichy/#images). We would be very interested in including some of these or related images that highlight your work on pigmentation into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery represent the results of NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me high-resolution files of any image files that were the result of your NIGMS-supported work? We're especially interested in, and may write a short summary about, the role of neural crest cells in pigmentation and other developmental processes. So any pictures that show involvement of neural crest cells would be very valuable to us, but we would also be interested in featuring some of your images of pigment cells and patterns. Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | David Parichy, University of Washington | xanthophore melanocyte pigment fluorescence skin zebrafish | | 257 | 11,418 | 325 | | 515 | 55,888 | 650 | Cells | | | | David Parichy, University of Washington | | | Pigment cells in fish skin | Active | Photograph | | | | David Parichy, University of Washington | 1,034 | 13,005,496 | 1,382 | Researchers gave permission for public use: From: David Parichy [dparichy@uw.edu] Sent: Wednesday, July 06, 2016 2:29 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Images for NIGMS Image Gallery? Hi Martin Thanks for the enquiry. I’d be happy to make some high res versions available to you… Are there any on the website that you’re particularly interested in? How many would you like to select from? When do you need them by? Do you want some of videos from NIGMS grants as well? Best Dave On Jul 6, 2016, at 11:25 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Parichy, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we have noticed your stunning gallery of images on your website (at http://faculty.washington.edu/dparichy/#images). We would be very interested in including some of these or related images that highlight your work on pigmentation into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery represent the results of NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me high-resolution files of any image files that were the result of your NIGMS-supported work? We're especially interested in, and may write a short summary about, the role of neural crest cells in pigmentation and other developmental processes. So any pictures that show involvement of neural crest cells would be very valuable to us, but we would also be interested in featuring some of your images of pigment cells and patterns. Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | David Parichy, University of Washington | melanocyte xanthophore zebrafish pigment danio | | 258 | 14,974 | 344 | | 517 | 68,393 | 691 | Cells | | | | David Parichy, University of Washington | | | TEM cross-section of C. elegans (roundworm) | Active | Photograph | | The worm <i>Caenorhabditis elegans</i> is a popular laboratory animal because its small size and fairly simple body make it easy to study. Scientists use this small worm to answer many research questions in developmental biology, neurobiology, and genetics. This image, which was taken with transmission electron microscopy (TEM), shows a cross-section through <i>C. elegans</i>, revealing various internal structures.<Br><Br> The image is from <a href=" https://elifesciences.org/content/3/e01948/figure1">a figure</a> in an article published in the journal eLife. There is an annotated version of this graphic at <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5760">5760</a>. | | Piali Sengupta, Brandeis University | 6,000 | 108,034,516 | 6,000 | Per Dr. Sengupta, this image was published in a slightly different form in Doroquez et al, Elife 2014. Here's the caption from that paper: Figure 1. TEM cross-section with identified ciliary and glial endings. (A) Example TEM cross-section of a highpressure frozen/freeze-substituted (HPF-FS) C. elegans hermaphrodite animal (70-nm cross-section, 5.9 µm from the anterior nose tip). Edges surrounding the cuticle were feather-cropped. See Figure 1?figure supplement 1 for examples of preservation of subcellular structures in cilia, muscle, and junctions. (B) Endings of identified cells in the indicated bilateral sensilla within the cross-section TEM; only the right side of the animal is labeled. Cell endings are marked with a false-color overlay. Dorsal up, ventral down. Scale bar: 1 µm. See Figure 1?figure supplement 2 for additional cross-section views. DOI: 10.7554/eLife.01948.003 Doroquez et al. eLife 2014;3:e01948. DOI: 10.7554/eLife.01948 Unless otherwise indicated, the articles and journal content published by eLife on the eLife Sites are licensed under a Creative Commons Attribution license (also known as a CC-BY license). This means that you are free to use, reproduce and distribute the articles and related content (unless otherwise noted), for commercial and noncommercial purposes, subject to citation of the original source in accordance with the CC-BY license. | Piali Sengupta, Brandeis University | nematode roundworm Caenorhabditis elegans | | 1,500 | 238,864 | 1,500 | | 3,000 | 1,868,985 | 3,000 | Cells, Tools and Techniques | | | | Piali Sengupta, Brandeis University | | | Annotated TEM cross-section of C. elegans (roundworm) | Active | Photograph | | The worm <i>Caenorhabditis elegans</i> is a popular laboratory animal because its small size and fairly simple body make it easy to study. Scientists use this small worm to answer many research questions in developmental biology, neurobiology, and genetics. This image, which was taken with transmission electron microscopy (TEM), shows a cross-section through <i>C. elegans</i>, revealing various internal structures labeled in the image. You can find a high-resolution image without the annotations at image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5759">5759</a>.<Br><Br> The image is from <a href=" https://elifesciences.org/content/3/e01948/figure1">a figure</a> in an article published in the journal eLife. | | Piali Sengupta, Brandeis University | 675 | 132,051 | 676 | Per Dr. Sengupta, this image was published in a slightly different form in Doroquez et al, Elife 2014. Here's the caption from that paper: Figure 1. TEM cross-section with identified ciliary and glial endings. (A) Example TEM cross-section of a highpressure frozen/freeze-substituted (HPF-FS) C. elegans hermaphrodite animal (70-nm cross-section, 5.9 µm from the anterior nose tip). Edges surrounding the cuticle were feather-cropped. See Figure 1?figure supplement 1 for examples of preservation of subcellular structures in cilia, muscle, and junctions. (B) Endings of identified cells in the indicated bilateral sensilla within the cross-section TEM; only the right side of the animal is labeled. Cell endings are marked with a false-color overlay. Dorsal up, ventral down. Scale bar: 1 µm. See Figure 1?figure supplement 2 for additional cross-section views. DOI: 10.7554/eLife.01948.003 Doroquez et al. eLife 2014;3:e01948. DOI: 10.7554/eLife.01948 Unless otherwise indicated, the articles and journal content published by eLife on the eLife Sites are licensed under a Creative Commons Attribution license (also known as a CC-BY license). This means that you are free to use, reproduce and distribute the articles and related content (unless otherwise noted), for commercial and noncommercial purposes, subject to citation of the original source in accordance with the CC-BY license. | Piali Sengupta, Brandeis University | nematode roundworm Caenorhabditis elegans | | 308 | 120,250 | 308 | | 337 | 23,377 | 338 | Cells, Tools and Techniques | | | | Piali Sengupta, Brandeis University | | | Zebrafish pigment cell | Active | Photograph | | | | David Parichy, University of Washington | 1,041 | 6,425,760 | 1,025 | Researchers gave permission for public use: From: David Parichy [dparichy@uw.edu] Sent: Wednesday, July 06, 2016 2:29 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Images for NIGMS Image Gallery? Hi Martin Thanks for the enquiry. I’d be happy to make some high res versions available to you… Are there any on the website that you’re particularly interested in? How many would you like to select from? When do you need them by? Do you want some of videos from NIGMS grants as well? Best Dave On Jul 6, 2016, at 11:25 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Parichy, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we have noticed your stunning gallery of images on your website (at http://faculty.washington.edu/dparichy/#images). We would be very interested in including some of these or related images that highlight your work on pigmentation into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery represent the results of NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me high-resolution files of any image files that were the result of your NIGMS-supported work? We're especially interested in, and may write a short summary about, the role of neural crest cells in pigmentation and other developmental processes. So any pictures that show involvement of neural crest cells would be very valuable to us, but we would also be interested in featuring some of your images of pigment cells and patterns. Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | David Parichy, University of Washington | melanocyte pigment zebrafish skin neural crest cell | | 264 | 32,961 | 260 | | 521 | 75,358 | 513 | Cells | | | | David Parichy, University of Washington | | | Pigment cells in the fin of pearl danio | Active | Photograph | | | | David Parichy, University of Washington | 1,030 | 8,556,984 | 1,382 | Researchers gave permission for public use: From: David Parichy [dparichy@uw.edu] Sent: Wednesday, July 06, 2016 2:29 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Images for NIGMS Image Gallery? Hi Martin Thanks for the enquiry. I’d be happy to make some high res versions available to you… Are there any on the website that you’re particularly interested in? How many would you like to select from? When do you need them by? Do you want some of videos from NIGMS grants as well? Best Dave On Jul 6, 2016, at 11:25 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Parichy, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we have noticed your stunning gallery of images on your website (at http://faculty.washington.edu/dparichy/#images). We would be very interested in including some of these or related images that highlight your work on pigmentation into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery represent the results of NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me high-resolution files of any image files that were the result of your NIGMS-supported work? We're especially interested in, and may write a short summary about, the role of neural crest cells in pigmentation and other developmental processes. So any pictures that show involvement of neural crest cells would be very valuable to us, but we would also be interested in featuring some of your images of pigment cells and patterns. Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | David Parichy, University of Washington | melanocyte xanthophore zebrafish pigment danio | | 257 | 20,058 | 346 | | 515 | 88,462 | 691 | Cells | | | | David Parichy, University of Washington | | | A panorama view of cells | Active | Photograph | | This photograph shows a panoramic view of HeLa cells, a cell line many researchers use to study a large variety of important research questions. The cells' nuclei containing the DNA are stained in blue and the cells' cytoskeletons in gray. | | Tom Deerinck, National Center for Microscopy and Imaging Research | 5,250 | 16,617,731 | 12,000 | From: Tom Deerinck [ mailto:deerinck@ncmir.ucsd.edu] Sent: Friday, January 15, 2016 11:33 AM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] Subject: Re: art and neuroscience OK. I will stop looking for images (none of the SEM images of RBCs approach 12k pixels). I did have this huge 12k pixel image of cultured cells (attached) that can easily be enlarged to 80x35 inches. I am still working on the room full of pathology slides to make some "cool" widefield images. Looks like this is going to take longer than I planned but I will keep you apprised. Have a great 3 day weekend, -Tom | | HeLa cancer cell | | 1,312 | 912,865 | 2,998 | | 2,625 | 5,209,750 | 6,000 | Cells | | | | Tom Deerinck, National Center for Microscopy and Imaging Research | | | Host infection stimulates antibiotic resistance | Active | Illustration | | This illustration shows pathogenic bacteria behave like a Trojan horse: switching from antibiotic susceptibility to resistance during infection. <i>Salmonella</i> are vulnerable to antibiotics while circulating in the blood (depicted by fire on red blood cell) but are highly resistant when residing within host macrophages. This leads to treatment failure with the emergence of drug-resistant bacteria.<Br><Br> This image was chosen as a winner of the 2016 NIH-funded research image call, and the research was funded in part by NIGMS. | | Mike Mahan and Peter Allen, UC Santa Barbara | 2,588 | 1,174,404 | 2,000 | | Mike Mahan, UC Santa Barbara | antibiotic infection resistance immune cell macrophage reservoir | | 647 | 51,401 | 500 | | 1,294 | 212,496 | 1,000 | Cells, Genes | | | | | | | Migrating pigment cells | Active | Photograph | | | | David Parichy, University of Washington | 1,030 | 12,086,784 | 1,300 | Researchers gave permission for public use: From: David Parichy [dparichy@uw.edu] Sent: Wednesday, July 06, 2016 2:29 PM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: Images for NIGMS Image Gallery? Hi Martin Thanks for the enquiry. I’d be happy to make some high res versions available to you… Are there any on the website that you’re particularly interested in? How many would you like to select from? When do you need them by? Do you want some of videos from NIGMS grants as well? Best Dave On Jul 6, 2016, at 11:25 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Parichy, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we have noticed your stunning gallery of images on your website (at http://faculty.washington.edu/dparichy/#images). We would be very interested in including some of these or related images that highlight your work on pigmentation into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery represent the results of NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me high-resolution files of any image files that were the result of your NIGMS-supported work? We're especially interested in, and may write a short summary about, the role of neural crest cells in pigmentation and other developmental processes. So any pictures that show involvement of neural crest cells would be very valuable to us, but we would also be interested in featuring some of your images of pigment cells and patterns. Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | David Parichy, University of Washington | melanocyte pigment axolotl neural crest cell | | 257 | 10,315 | 325 | | 515 | 46,555 | 650 | Cells | | 7/14/2016 | | David Parichy, University of Washington | | | Panorama view of golden mitochondria | Active | Photograph | | Mitochondria are the powerhouses of the cells, generating the energy the cells need to do their tasks and to stay alive. Researchers have studied mitochondria for some time because when these cell organelles don't work as well as they should, several diseases develop. In this photograph of cow cells taken with a microscope, the mitochondria were stained in bright yellow to visualize them in the cell. The large blue dots are the cell nuclei and the gray web is the cytoskeleton of the cells. | | Torsten Wittmann, University of California, San Francisco | 5,250 | 9,863,618 | 12,000 | | Torsten Wittmann, University of California, San Francisco | mitochondria stain bovine | | 1,312 | 524,028 | 2,998 | | 2,625 | 1,981,296 | 6,000 | Cells | | | | Torsten Wittmann, University of California, San Francisco | | | Mitotic cell awaits chromosome alignment | Active | Photograph | | During mitosis, spindle microtubules (red) attach to chromosome pairs (blue), directing them to the spindle equator. This midline alignment is critical for equal distribution of chromosomes in the dividing cell. Scientists are interested in how the protein kinase Plk1 (green) regulates this activity in human cells. Image is a volume projection of multiple deconvolved z-planes acquired with a Nikon widefield fluorescence microscope. This image was chosen as a winner of the 2016 NIH-funded research image call. Related to <a href="/Pages/DetailPage.aspx?imageID2=5766">image 5766</a>. <Br><Br> The research that led to this image was funded by NIGMS. | | Robert Lera and Mark Burkard, University of Wisconsin-Madison
| 240 | 59,188 | 265 | | Mark Burkard, University of Wisconsin-Madison
| mitosis cell division spindle DNA genome | | 279 | 55,605 | 308 | | 119 | 2,422 | 132 | Cells, Genes | | | | | | | A chromosome goes missing in anaphase | Active | Photograph | | Anaphase is the critical step during mitosis when sister chromosomes are disjoined and directed to opposite spindle poles, ensuring equal distribution of the genome during cell division. In this image, one pair of sister chromosomes at the top was lost and failed to divide after chemical inhibition of polo-like kinase 1. This image depicts chromosomes (blue) separating away from the spindle mid-zone (red). Kinetochores (green) highlight impaired movement of some chromosomes away from the mid-zone or the failure of sister chromatid separation (top). Scientists are interested in detailing the signaling events that are disrupted to produce this effect. The image is a volume projection of multiple deconvolved z-planes acquired with a Nikon widefield fluorescence microscope. <Br><Br> This image was chosen as a winner of the 2016 NIH-funded research image call. The research that led to this image was funded by NIGMS. <Br><Br>Related to <a href="/Pages/DetailPage.aspx?imageID2=5765">image 5765</a>.
| | Robert Lera and Mark Burkard, University of Wisconsin-Madison | 298 | 41,816 | 240 | | Mark Burkard, University of Wisconsin-Madison | mitosis cell cycle chromosome spindle cell division DNA
| | 382 | 55,297 | 308 | | 149 | 2,361 | 120 | Cells, Genes | | 7/21/2016 | | | | | Multivesicular bodies containing intralumenal vesicles assemble at the vacuole 3 | Active | Illustration | | Collecting and transporting cellular waste and sorting it into recylable and nonrecylable pieces is a complex business in the cell. One key player in that process is the endosome, which helps collect, sort and transport worn-out or leftover proteins with the help of a protein assembly called the endosomal sorting complexes for transport (or ESCRT for short). These complexes help package proteins marked for breakdown into intralumenal vesicles, which, in turn, are enclosed in multivesicular bodies for transport to the places where the proteins are recycled or dumped. In this image, two multivesicular bodies (with yellow membranes) contain tiny intralumenal vesicles (with a diameter of only 25 nanometers; shown in red) adjacent to the cell's vacuole (in orange). <Br><Br>Scientists working with baker's yeast (<i>Saccharomyces cerevisiae</i>) study the budding inward of the limiting membrane (green lines on top of the yellow lines) into the intralumenal vesicles. This tomogram was shot with a Tecnai F-20 high-energy electron microscope, at 29,000x magnification, with a 0.7-nm pixel, ~4-nm resolution.<Br><Br> To learn more about endosomes, see the <i>Biomedical Beat</i> blog post <a href=" https://biobeat.nigms.nih.gov/2016/07/the-cells-mailroom/">The Cell’s Mailroom</a>. Related to a microscopy photograph <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5768">5768</a> that was used to generate this illustration and a zoomed-out version <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5769">5769</a> of this illustration. | | Matthew West and Greg Odorizzi, University of Colorado | 490 | 219,942 | 649 | Researchers gave permission for public use: From: Matthew C. West [mwest@colorado.edu] Friday, July 22, 2016 6:25 PM Martin, You have my permission to post my EM and tomography models at NIGMS. Best! --Matt Matthew West Odorizzi lab MCD Biology, University of Colorado, Boulder 303-735-6518 From: Spiering, Martin (NIH/NIGMS) [C] To: Matthew C. West [mwest@colorado.edu] Cc:Greg Odorizzi [charles.odorizzi@colorado.edu] Friday, July 22, 2016 5:14 PM Hello Matt, Many thanks for remembering and for sending this great image! I'll add this to our image gallery shortly. Which reminds me, would you give us permission to include these images in the NIGMS image gallery (at https://images.nigms.nih.gov/Pages/Home.aspx)? Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would that be okay? The post featuring your endosome image should be posted on Biomedical Beat ( https://biobeat.nigms.nih.gov/) shortly--the person who does the posting will be back next week and will hopefully move this forward promptly. Have a great weekend, Martin | Greg Odorizzi, University of Colorado | endocytosis endosome lysosome vacuole recycling | | 233 | 52,343 | 308 | | 244 | 8,228 | 324 | Cells, Tools and Techniques | | | BioBeat | Matthew West and Greg Odorizzi, University of Colorado | | | Multivesicular bodies containing intralumenal vesicles assemble at the vacuole 2 | Active | Photograph | | Collecting and transporting cellular waste and sorting it into recylable and nonrecylable pieces is a complex business in the cell. One key player in that process is the endosome, which helps collect, sort and transport worn-out or leftover proteins with the help of a protein assembly called the endosomal sorting complexes for transport (or ESCRT for short). These complexes help package proteins marked for breakdown into intralumenal vesicles, which, in turn, are enclosed in multivesicular bodies for transport to the places where the proteins are recycled or dumped. In this image, a multivesicular body (the round structure slightly to the right of center) contain tiny intralumenal vesicles (with a diameter of only 25 nanometers; the round specks inside the larger round structure) adjacent to the cell's vacuole (below the multivesicular body, shown in darker and more uniform gray). <Br><Br>Scientists working with baker's yeast (<i>Saccharomyces cerevisiae</i>) study the budding inward of the limiting membrane (green lines on top of the yellow lines) into the intralumenal vesicles. This tomogram was shot with a Tecnai F-20 high-energy electron microscope, at 29,000x magnification, with a 0.7-nm pixel, ~4-nm resolution. <Br><Br>To learn more about endosomes, see the <i>Biomedical Beat</i> blog post <a href=" https://biobeat.nigms.nih.gov/2016/07/the-cells-mailroom/">The Cell’s Mailroom</a>. Related to a color-enhanced version <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5767">5767</a> and image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5769">5769</a>. | | Matthew West and Greg Odorizzi, University of Colorado | 1,393 | 5,888,371 | 1,409 | Researchers gave permission for public use: From: Matthew C. West [mwest@colorado.edu] Friday, July 22, 2016 6:25 PM Martin, You have my permission to post my EM and tomography models at NIGMS. Best! --Matt Matthew West Odorizzi lab MCD Biology, University of Colorado, Boulder 303-735-6518 From: Spiering, Martin (NIH/NIGMS) [C] To: Matthew C. West [mwest@colorado.edu] Cc:Greg Odorizzi [charles.odorizzi@colorado.edu] Friday, July 22, 2016 5:14 PM Hello Matt, Many thanks for remembering and for sending this great image! I'll add this to our image gallery shortly. Which reminds me, would you give us permission to include these images in the NIGMS image gallery (at https://images.nigms.nih.gov/Pages/Home.aspx)? Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would that be okay? The post featuring your endosome image should be posted on Biomedical Beat ( https://biobeat.nigms.nih.gov/) shortly--the person who does the posting will be back next week and will hopefully move this forward promptly. Have a great weekend, Martin | Greg Odorizzi, University of Colorado | | | 348 | 25,704 | 351 | | 696 | 146,235 | 703 | Cells, Tools and Techniques | | | vacuole endocytosis endosome recycling | Matthew West and Greg Odorizzi, University of Colorado | | | Multivesicular bodies containing intralumenal vesicles assemble at the vacuole 1 | Active | Illustration | | Collecting and transporting cellular waste and sorting it into recylable and nonrecylable pieces is a complex business in the cell. One key player in that process is the endosome, which helps collect, sort and transport worn-out or leftover proteins with the help of a protein assembly called the endosomal sorting complexes for transport (or ESCRT for short). These complexes help package proteins marked for breakdown into intralumenal vesicles, which, in turn, are enclosed in multivesicular bodies for transport to the places where the proteins are recycled or dumped. In this image, two multivesicular bodies (with yellow membranes) contain tiny intralumenal vesicles (with a diameter of only 25 nanometers; shown in red) adjacent to the cell's vacuole (in orange). <Br><Br>Scientists working with baker's yeast (<i>Saccharomyces cerevisiae</i>) study the budding inward of the limiting membrane (green lines on top of the yellow lines) into the intralumenal vesicles. This tomogram was shot with a Tecnai F-20 high-energy electron microscope, at 29,000x magnification, with a 0.7-nm pixel, ~4-nm resolution. <Br><Br>To learn more about endosomes, see the <i>Biomedical Beat</i> blog post <a href=" https://biobeat.nigms.nih.gov/2016/07/the-cells-mailroom/">The Cell’s Mailroom</a>. Related to a microscopy photograph <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5768">5768</a> that was used to generate this illustration and a zoomed-in version <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5767">5767</a> of this illustration. | | Matthew West and Greg Odorizzi, University of Colorado | 1,393 | 5,888,371 | 1,409 | Researchers gave permission for public use: From: Matthew C. West [mwest@colorado.edu] Friday, July 22, 2016 6:25 PM Martin, You have my permission to post my EM and tomography models at NIGMS. Best! --Matt Matthew West Odorizzi lab MCD Biology, University of Colorado, Boulder 303-735-6518 From: Spiering, Martin (NIH/NIGMS) [C] To: Matthew C. West [mwest@colorado.edu] Cc:Greg Odorizzi [charles.odorizzi@colorado.edu] Friday, July 22, 2016 5:14 PM Hello Matt, Many thanks for remembering and for sending this great image! I'll add this to our image gallery shortly. Which reminds me, would you give us permission to include these images in the NIGMS image gallery (at https://images.nigms.nih.gov/Pages/Home.aspx)? Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would that be okay? The post featuring your endosome image should be posted on Biomedical Beat ( https://biobeat.nigms.nih.gov/) shortly--the person who does the posting will be back next week and will hopefully move this forward promptly. Have a great weekend, Martin | Greg Odorizzi, University of Colorado | vacuole endosome endocytosis recycling lysosome | | 348 | 6,173 | 351 | | 696 | 22,155 | 703 | Cells, Tools and Techniques | | | BioBeat | Matthew West and Greg Odorizzi, University of Colorado | | | EM of yeast cell division | Active | Photograph | | Cell division is an incredibly coordinated process. It not only ensures that the new cells formed during this event have a full set of chromosomes, but also that they are endowed with all the cellular materials, including proteins, lipids and small functional compartments called organelles, that are required for normal cell activity. This proper apportioning of essential cell ingredients helps each cell get off to a running start.<Br><Br> This image shows an electron microscopy (EM) thin section taken at 10,000x magnification of a dividing yeast cell over-expressing the protein ubiquitin, which is involved in protein degradation and recycling. The picture features mother and daughter endosome accumulations (small organelles with internal vesicles), a darkly stained vacuole and a dividing nucleus in close contact with a cadre of lipid droplets (unstained spherical bodies). Other dynamic events are also visible, such as spindle microtubules in the nucleus and endocytic pits at the plasma membrane. <Br><Br>These extensive details were revealed thanks to a preservation method involving high-pressure freezing, freeze-substitution and Lowicryl HM20 embedding. | | Matthew West and Greg Odorizzi, University of Colorado | 1,958 | 6,657,886 | 1,700 | Researchers gave permission for public use: From: Matthew C. West [mwest@colorado.edu] Friday, July 22, 2016 6:25 PM Martin, You have my permission to post my EM and tomography models at NIGMS. Best! --Matt Matthew West Odorizzi lab MCD Biology, University of Colorado, Boulder 303-735-6518 From: Spiering, Martin (NIH/NIGMS) [C] To: Matthew C. West [mwest@colorado.edu] Cc:Greg Odorizzi [charles.odorizzi@colorado.edu] Friday, July 22, 2016 5:14 PM Hello Matt, Many thanks for remembering and for sending this great image! I'll add this to our image gallery shortly. Which reminds me, would you give us permission to include these images in the NIGMS image gallery (at https://images.nigms.nih.gov/Pages/Home.aspx)? Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would that be okay? The post featuring your endosome image should be posted on Biomedical Beat ( https://biobeat.nigms.nih.gov/) shortly--the person who does the posting will be back next week and will hopefully move this forward promptly. Have a great weekend, Martin | Greg Odorizzi, University of Colorado | endosome Saccharomyces cerevisiae cell division mitosis | | 489 | 17,244 | 425 | | 979 | 121,638 | 850 | Cells, Genes, Tools and Techniques | | | | Matthew West and Greg Odorizzi, University of Colorado | | | Microsporidia in roundworm 2 | Active | Photograph | | Many disease-causing microbes manipulate their host’s metabolism and cells for their own ends. Microsporidia—which are parasites closely related to fungi—infect and multiply inside animal cells, and take the rearranging of cells’ interiors to a new level. They reprogram animal cells such that the cells start to fuse, causing them to form long, continuous tubes. As shown in this image of the roundworm <i>Caenorhabditis elegans</i>, microsporidia (dark oval shapes) invaded the worm’s gut cells (long tube; the cell nuclei are shown in red) and have instructed the cells to merge. The cell fusion enables the microsporidia to thrive and propagate in the expanded space. Scientists study microsporidia in worms to gain more insight into how these parasites manipulate their host cells. This knowledge might help researchers devise strategies to prevent or treat infections with microsporidia. <Br><Br> For more on the research into microsporidia, see <a href=" http://ucsdnews.ucsd.edu/pressrelease/single_celled_fungi_multiply_alien_like_by_fusing_cells_in_host">this news release from the University of California San Diego</a>. Related to images <a href="/Pages/DetailPage.aspx?imageID2=5777">5777</a> and <a href="/Pages/DetailPage.aspx?imageID2=5779">5779</a>. | | Keir Balla and Emily Troemel, University of California San Diego | 512 | 787,460 | 512 | Researchers gave permission for public use: From: Troemel, Emily [etroemel@ucsd.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Keir Balla [keirballa@gmail.com] Tuesday, August 23, 2016 10:29 AM Dear Martin, Thanks for your email and for your interest in our work! It would be wonderful if you featured our study of microsporidia infecting nematodes. I’ve cc’ed my grad student Keir Balla, who captured the image you noticed and did the work. He should be able to provide you with high res, unpublished images that you could use for your image gallery of NIGMS-funded work. Best wishes, Emily Emily Troemel, Ph.D. Professor of Biological Sciences University of California, San Diego 4202 Bonner Hall 9500 Gilman Drive #0349 La Jolla, CA 92093-0349 office: 858-246-0708 lab: 858-246-0882 fax: 858-822-3021 etroemel@ucsd.edu http://www.biology.ucsd.edu/labs/troemel On Aug 23, 2016, at 7:22 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Troemel, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your extremely striking image of microsporidia infecting roundworm cells in a recent news release by UCSD (at http://ucsdnews.ucsd.edu/pressrelease/single_celled_fungi_multiply_alien_like_by_fusing_cells_in_host) highlighting your work. We're interested in including this or similar images into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me high-resolution files of any images (or videos) you would be willing to share? (Preferably of unpublished images because otherwise we would need the journal's permission as well.) Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | Emily Troemel, University of California San Diego | microsporidium microsporidia fungus fungi intracellular | | 308 | 110,772 | 308 | | 256 | 10,081 | 256 | Cells | | | | Keir Balla and Emily Troemel, University of California San Diego | | | Confocal microscopy image of two Drosophila ovarioles | Active | Photograph | | Ovarioles in female insects are tubes in which egg cells (called oocytes) form at one end and complete their development as they reach the other end of the tube. This image, taken with a confocal microscope, shows ovarioles in a very popular lab animal, the fruit fly <i>Drosophila</i>. The basic structure of ovarioles supports very rapid egg production, with some insects (like termites) producing several thousand eggs per day. Each insect ovary typically contains four to eight ovarioles, but this number varies widely depending on the insect species. <Br><Br>Scientists use insect ovarioles, for example, to study the basic processes that help various insects, including those that cause disease (like some mosquitos and biting flies), reproduce very quickly. | | Daniel Kirilly in the Ting Xie Lab, Stowers Institute for Medical Research, and the 2004 Olympus BioScapes Competition | 1,384 | 7,350,588 | 1,768 | Researchers and Olympus granted permission for public use: Xie, Ting [TGX@stowers.org] Actions To: Spiering, Martin (NIH/NIGMS) [C] Cc: Machalek, Alisa Zapp (NIH/NIGMS) [E] Wednesday, August 03, 2016 7:39 PM You replied on 8/4/2016 8:32 AM. Dear Martin, I am glad that you choose the beautiful image for promotion purpose. Please credit the image in such a way, Daniel Kirilly in the Ting Xie Lab. Please let me know if you need more information on the image. Thanks Best Regards Ting Sent from my iPhone Spiering, Martin (NIH/NIGMS) [C] Sent Items Wednesday, August 03, 2016 3:52 PM Dear Dr. Xie, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we would like to include one of your stunning images (showing two fly ovarioles) that was taken by one of your lab associates, Daniel Kirilly, and won honorable mention at the 2004 Olympus BioScapes (at http://www.olympusbioscapes.com/gallery/year/2004) into our image gallery (at https://images.nigms.nih.gov/). We feel the image would greatly enhance our gallery and also bring your work to broader public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you (or Daniel Kirilly), for this work. Would you let us feature your work in this way? Please note that we have already obtained permission for such use and a high-resolution file of your image from Olympus. Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS From: Ilene Semiatin [ilene@edge-comm.net] Sent: Wednesday, August 03, 2016 10:42 AM To: Spiering, Martin (NIH/NIGMS) [C] Subject: Re: seeking permission to use Daniel Kirilly image Hi Martin, We hereby provide permission to use the 2004 Kirilly image of ovarioles in your gallery provided that you properly credit both Daniel Kirilly and the 2004 Olympus BioScapes Competition in your credit information. Do you need a link to download the image? If so, I can provide it. Regarding images being in the public domain, some of the images that earn BioScapes awards might be in the public domain by default, as some of them are captured at federal government institutions and some of the research product produced at federally funded institutions is, according to policy, in the public domain. However, we are not the arbiters of what is and what is not in the public domain. Unless a researcher has specifically told us in writing that his/her work is not copyrighted and is in the public domain, we assume that our regular copyright and permissions rules should be adhered to. For your gallery’s purposes, we will be pleased to reply with permission to use any of the images if you agree to credit them properly. Let us know which ones you’d like access to. Thanks, Ilene On Aug 3, 2016, at 10:31 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Hello Ilene, Thank you very much for getting back to me. Strange that my email didn't reach you--I just sent a test email from a different account to see whether this is an issue to do with the originating email system/server. I have attached the image we like to get permission to include in the gallery. As for your question about why we want to use this image, all media in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator for this work. As you may recall, my colleague, Alisa Machalek, had asked you about the possibility of these images entering public domain, so I just want to double check this with you. From your note, I understand that all of these images remain copyrighted and won't move into the public domain any time soon. Is that correct? Please let me know whether we could get permission to include the image in our gallery and if you have any questions or need anything else from us. Thanks again, Martin | Ting Xie, Stowers Institute for Medical Research | fruit fly ovary Drosophila; development; developmental biology | | 346 | 14,176 | 442 | | 692 | 68,339 | 884 | Cells, Tools and Techniques | | | | 2004 Olympus BioScapes Competition | | | Lysosome clusters around amyloid plaques | Active | Photograph | | It's probably most people's least favorite activity, but we still need to do it--take out our trash. Otherwise our homes will get cluttered and smelly, and eventually, we'll get sick. The same is true for our cells: garbage disposal is an ongoing and essential activity, and our cells have a dedicated waste-management system that helps keep them clean and neat. One major waste-removal agent in the cell is the lysosome. Lysosomes are small structures, called organelles, and help the body to dispose of proteins and other molecules that have become damaged or worn out.<Br><Br>This image shows a massive accumulation of lysosomes (visualized with LAMP1 immunofluorescence, in purple) within nerve cells that surround amyloid plaques (visualized with beta-amyloid immunofluorescence, in light blue) in a mouse model of Alzheimer's disease. Scientists have linked accumulation of lysosomes around amyloid plaques to impaired waste disposal in nerve cells, ultimately resulting in cell death. | | Swetha Gowrishankar and Shawn Ferguson, Yale School of Medicine | 1,771 | 11,357,944 | 2,133 | Researchers gave permission for public use: From: Ferguson, Shawn To: Spiering, Martin (NIH/NIGMS) [C] Tuesday, August 02, 2016 12:06 PM Dear Martin, Sorry for the delay in my response. Yes, it would be great to have this image included in the NIGMS image gallery. Shawn On Aug 2, 2016, at 9:49 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Shawn, Last week, I had reached out to you to ask whether we can post your lysosome image on the NIGMS image gallery. Since I've not heard back from you, I just wanted to quickly check with you whether you received my note. Please let me know if you have any questions. Many thanks, Martin From: Spiering, Martin (NIH/NIGMS) [C] Sent: Thursday, July 28, 2016 10:17 AM To: Ferguson, Shawn Subject: RE: Lysosome images for NIGMS blog post highlighting your work? Hello Shawn, I hope this finds you well. As you may recall, a little while ago, you supplied us with an image showing lysosomes at the site of abnormal protein clusters at brain neurons and reviewed for us a short blog post describing the image. Thanks again for all your contributions and help with this. I wanted to ask you is whether we can include your image in the NIGMS image gallery (at https://images.nigms.nih.gov/) to bring your work to even wider public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your image in this way? Best wishes, Martin Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | Shawn Ferguson, Yale School of Medicine | lysosome endosome Alzheimer Alzheimer's AD protein aggregate amyloid plaque | | 442 | 40,833 | 533 | | 885 | 192,904 | 1,066 | Cells | | | | Swetha Gowrishankar and Shawn Ferguson, Yale School of Medicine | | | Microsporidia in roundworm 1 | Active | Photograph | | Many disease-causing microbes manipulate their host’s metabolism and cells for their own ends. Microsporidia—which are parasites closely related to fungi—infect and multiply inside animal cells, and take the rearranging of cells’ interiors to a new level. They reprogram animal cells such that the cells start to fuse, causing them to form long, continuous tubes. As shown in this image of the roundworm <i>Caenorhabditis elegans</i>, microsporidia (shown in magenta) have invaded the worm’s gut cells (shown in yellow; the cells’ nuclei are shown in blue) and have instructed the cells to merge. The cell fusion enables the microsporidia to thrive and propagate in the expanded space. Scientists study microsporidia in worms to gain more insight into how these parasites manipulate their host cells. This knowledge might help researchers devise strategies to prevent or treat infections with microsporidia. For more on the research into microsporidia, see <a href=" http://ucsdnews.ucsd.edu/pressrelease/single_celled_fungi_multiply_alien_like_by_fusing_cells_in_host">this news release from the University of California San Diego</a>. Related to images <a href="/Pages/DetailPage.aspx?imageID2=5778">5778</a> and <a href="/Pages/DetailPage.aspx?imageID2=5779">5779</a>. | | Keir Balla and Emily Troemel, University of California San Diego | 357 | 1,465,762 | 1,024 | Researchers gave permission for public use: From: Troemel, Emily [etroemel@ucsd.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Keir Balla [keirballa@gmail.com] Tuesday, August 23, 2016 10:29 AM Dear Martin, Thanks for your email and for your interest in our work! It would be wonderful if you featured our study of microsporidia infecting nematodes. I’ve cc’ed my grad student Keir Balla, who captured the image you noticed and did the work. He should be able to provide you with high res, unpublished images that you could use for your image gallery of NIGMS-funded work. Best wishes, Emily Emily Troemel, Ph.D. Professor of Biological Sciences University of California, San Diego 4202 Bonner Hall 9500 Gilman Drive #0349 La Jolla, CA 92093-0349 office: 858-246-0708 lab: 858-246-0882 fax: 858-822-3021 etroemel@ucsd.edu http://www.biology.ucsd.edu/labs/troemel On Aug 23, 2016, at 7:22 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Troemel, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your extremely striking image of microsporidia infecting roundworm cells in a recent news release by UCSD (at http://ucsdnews.ucsd.edu/pressrelease/single_celled_fungi_multiply_alien_like_by_fusing_cells_in_host) highlighting your work. We're interested in including this or similar images into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me high-resolution files of any images (or videos) you would be willing to share? (Preferably of unpublished images because otherwise we would need the journal's permission as well.) Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | Emily Troemel, University of California San Diego | microsporidium microsporidia fungus fungi intracellular | | 107 | 62,526 | 308 | | 178 | 17,522 | 510 | Cells | | | | Keir Balla and Emily Troemel, University of California San Diego | | | Microsporidia in roundworm 3 | Active | Photograph | | Many disease-causing microbes manipulate their host’s metabolism and cells for their own ends. Microsporidia—which are parasites closely related to fungi—infect and multiply inside animal cells, and take the rearranging of cells’ interiors to a new level. They reprogram animal cells such that the cells start to fuse, causing them to form long, continuous tubes. As shown in this image of the roundworm <i>Caenorhabditis elegans</i>, microsporidia (shown in red) have invaded the worm’s gut cells (the large blue dots are the cells' nuclei) and have instructed the cells to merge. The cell fusion enables the microsporidia to thrive and propagate in the expanded space. Scientists study microsporidia in worms to gain more insight into how these parasites manipulate their host cells. This knowledge might help researchers devise strategies to prevent or treat infections with microsporidia. <Br><Br> For more on the research into microsporidia, see <a href=" http://ucsdnews.ucsd.edu/pressrelease/single_celled_fungi_multiply_alien_like_by_fusing_cells_in_host">this news release from the University of California San Diego</a>. Related to images <a href="/Pages/DetailPage.aspx?imageID2=5777">5777</a> and <a href="/Pages/DetailPage.aspx?imageID2=5778">5778</a>. | | Keir Balla and Emily Troemel, University of California San Diego | 606 | 3,780,218 | 1,558 | Researchers gave permission for public use: From: Troemel, Emily [etroemel@ucsd.edu] To: Spiering, Martin (NIH/NIGMS) [C] Cc: Keir Balla [keirballa@gmail.com] Tuesday, August 23, 2016 10:29 AM Dear Martin, Thanks for your email and for your interest in our work! It would be wonderful if you featured our study of microsporidia infecting nematodes. I’ve cc’ed my grad student Keir Balla, who captured the image you noticed and did the work. He should be able to provide you with high res, unpublished images that you could use for your image gallery of NIGMS-funded work. Best wishes, Emily Emily Troemel, Ph.D. Professor of Biological Sciences University of California, San Diego 4202 Bonner Hall 9500 Gilman Drive #0349 La Jolla, CA 92093-0349 office: 858-246-0708 lab: 858-246-0882 fax: 858-822-3021 etroemel@ucsd.edu http://www.biology.ucsd.edu/labs/troemel On Aug 23, 2016, at 7:22 AM, Spiering, Martin (NIH/NIGMS) [C] < martin.spiering@nih.gov> wrote: Dear Dr. Troemel, I am a writer and editor with the Office of Communication and Public Liaison at the National Institute of General Medical Sciences. I'm reaching out to you because we noticed your extremely striking image of microsporidia infecting roundworm cells in a recent news release by UCSD (at http://ucsdnews.ucsd.edu/pressrelease/single_celled_fungi_multiply_alien_like_by_fusing_cells_in_host) highlighting your work. We're interested in including this or similar images into our image gallery (at https://images.nigms.nih.gov/) to bring your work to broader public attention. Images and videos in the NIGMS image gallery highlight NIGMS-funded work and are made available to the public for educational uses, provided that users credit the creator, i.e., you, for this work. Would you let us feature your work in this way? If so, could you send me high-resolution files of any images (or videos) you would be willing to share? (Preferably of unpublished images because otherwise we would need the journal's permission as well.) Please let me know if you have any questions or concerns. I look forward to hearing from you. Thank you, Martin J Spiering, PhD, ELS Writer & Editor (contractor) OCPL, National Institutes of Health/NIGMS | Emily Troemel, University of California San Diego | microsporidium microsporidia fungus fungi intracellular | | 120 | 61,025 | 308 | | 303 | 21,670 | 779 | Cells | | | | Keir Balla and Emily Troemel, University of California San Diego | | | Mouse cerebellum | Active | Photograph | | The cerebellum is the brain's locomotion control center. Found at the base of your brain, the cerebellum is a single layer of tissue with deep folds like an accordion. People with damage to this region of the brain often have difficulty with balance, coordination and fine motor skills. <BR><BR> This image of a mouse cerebellum is part of a collection of such images in different colors and at different levels of magnification from the National Center for Microscopy and Imaging Research (NCMIR). Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5800">5800</a>. | | Tom Deerinck and Mark Ellisman, NCMIR | 948 | 626,170 | 1,200 | This is Mouse Cerebellum 6 from NCMIR. Tom Deerinck almost certainly has a larger/higher resolution image. Tom Deerinck gave permission for us to post publicly all the images in the NCMIR gallery ( https://ncmir.ucsd.edu/gallery/image-gallery). This image was produced sometime in 2012 or before and uploaded on 10-20-16. It was also posted on Instagram in October 2016. | Mark Ellisman, NCMIR | mouse cerebellum NCMIR cerebellum mouse cerebellum | | | | | | 948 | 1,797,108 | 1,200 | Cells | | | | National Center for Microscopy and Imaging Research (NCMIR) | | | Mouse retina | Active | Photograph | | What looks like the gossamer wings of a butterfly is actually the retina of a mouse, delicately snipped to lay flat and sparkling with fluorescent molecules. The image is from a research project investigating the promise of gene therapy for glaucoma. It was created at an NIGMS-funded advanced microscopy facility that develops technology for imaging across many scales, from whole organisms to cells to individual molecules. <BR><BR> The ability to obtain high-resolution imaging of tissue as large as whole mouse retinas was made possible by a technique called large-scale mosaic confocal microscopy, which was pioneered by the NIGMS-funded National Center for Microscopy and Imaging Research. The technique is similar to Google Earth in that it computationally stitches together many small, high-resolution images.
| | Keunyoung Kim, Wonkyu Ju and Mark Ellisman, National Center for Microscopy and Imaging Research, University of California, San Diego. | 12,571 | 147,419,947 | 14,000 | From: Sammak, Paul (NIH/NIGMS) [E] Sent: Thursday, October 13, 2016 12:53 PM To: Ellisman Mark (mark@ncmir.ucsd.edu) < mark@ncmir.ucsd.edu>; ' deerinck@ncmir.ucsd.edu' < deerinck@ncmir.ucsd.edu>; ' keunyoung@ncmir.ucsd.edu' < keunyoung@ncmir.ucsd.edu>; ' wju@ucsd.edu' < wju@ucsd.edu> Cc: Machalek, Alisa Zapp (NIH/NIGMS) [E] < MachaleA@nigms.nih.gov>; Gregurick, Susan (NIH/NIGMS) [E] < susan.gregurick@nih.gov>; Greenberg, Judith (NIH/NIGMS) [E] < GREENBEJ@nigms.nih.gov>; Sheeley, Douglas (NIH/NIGMS) [E] < SheeleyD@mail.nih.gov> Subject: NIH image recognition: Lighting Up the Promise of Gene Therapy for Glaucoma. Dear Christine, Tom, Wonkyu and Mark, Your image of GFP-labeled ganglia in a mouse retina preparation was selected for first prize in the Combined Federal Campaign NIH IC Directors Art Challenge for “The Beauty of Science” ( http://cfc.nih.gov/). It was selected by combined voting of IC Directors for the best three images. The wining art will be displayed in Building 1, the CFC website, and in upcoming NIH publications. I also would like to acknowledge the elegant work in the paper that describes the encouraging story about the promise of therapy for Glaucoma from basic science studies. Please share with your co-authors! PAPER: DRP1 inhibition rescues retinal ganglion cells and their axons by preserving mitochondrial integrity in a mouse model of glaucoma K-Y Kim1, GA Perkins1, MS Shim2, E Bushong1, N Alcasid1, S Ju1, MH Ellisman1, RN Weinreb2 and W-K Ju*,2 Citation: Cell Death and Disease (2015) 6, e1839; doi:10.1038/cddis.2015.180 & 2015 Macmillan Publishers Limited All rights reserved 2041-4889/15 www.nature.com/cddis More details: <BR><BR> Glaucoma is a progressive eye disease and the leading cause of irreversible blindness. It is characterized by the death of neurons in the retina called retinal ganglion cells. A number of studies over the past decade suggest that targeting these cells with gene therapy designed to prevent their death might slow the progression of glaucoma. <BR><BR> This study is investigating whether a non-disease-causing virus (adeno-associated virus serotype 2) can effectively deliver genes to retinal ganglion cells. The researchers introduced into the virus a gene for green fluorescent protein (GFP) so they could visualize how well the virus transduced the cells. <BR><BR> Two months after viral delivery of the fluorescent vector to the eyes of 7-month-old mice, the researchers examined the entire retinas of the subjects under a microscope. The ability to obtain high-resolution imaging of tissue as large as whole mouse retinas was made possible by a technique called large-scale mosaic confocal microscopy, which was pioneered by the NIGMS-funded National Center for Microscopy and Imaging Research. The technique is similar to Google Earth in that it computationally stitches together many small, high-resolution images. <BR><BR> The researchers observed GFP expression (yellow) in all parts of the retinal ganglion cells (blue), including the soma, axons and dendritic tree. These results suggest that a viral delivery system could deliver therapeutic genes to retinal ganglion cells for treating glaucoma and related diseases. <BR><BR> EQUIPMENT: Olympus FluoView™ FV1000 Confocal Microscope. Fluorophores: green fluorescent protein and Alexa Fluor 568. Non-glaucomatous DBA/2J-Gpnmb+ mice. <BR><BR> Reflecting on the work, the lead researcher [Keunyoung (“Christine”) Kim] says: “It is amazing to see intricate and artistically organized microscopic structures. … I encountered an entirely new world invisible to the naked eye—a galaxy of infinite secrets and endless potential for discovery.” | Keunyoung (“Christine”) Kim, Wonkyu Ju and Mark Ellisman, all of the National Center for Microscopy and Imaging Research (NCMIR) at the University of California, San Diego. Grant info: R24GM137200 | retina large-scale mosaic confocal microscopy CFC
| | 300 | 176,124 | 360 | | 1,250 | 2,507,026 | 1,500 | Cells, Tools and Techniques | | | BioBeat; won first place in the 2016 CFC NIH Director's art contest
| Tom Deerinck and Keunyoung (“Christine”) Kim, NCMIR | | | Mouse cerebellum in pink and blue | Active | Photograph | | The cerebellum is the brain's locomotion control center. Found at the base of your brain, the cerebellum is a single layer of tissue with deep folds like an accordion. People with damage to this region of the brain often have difficulty with balance, coordination and fine motor skills. <BR><BR> This image of a mouse cerebellum is part of a collection of such images in different colors and at different levels of magnification from the National Center for Microscopy and Imaging Research (NCMIR). Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=5795">5795</a>. | | Mark Ellisman, NCMIR | 1,125 | 1,137,299 | 1,500 | This is Mouse Cerebellum 3 from NCMIR. Tom Deerinck almost certainly has a larger/higher resolution image. Tom Deerinck gave permission for us to post publicly all the images in the NCMIR gallery ( https://ncmir.ucsd.edu/gallery/image-gallery). This image was produced sometime in 2012 or before and uploaded on 10-20-16. | Tom Deerinck and Mark Ellisman, NCMIR | mouse cerebellum NCMIR cerebellum mouse cerebellum
| | 231 | 190,609 | 308 | | 1,125 | 2,496,477 | 1,125 | Cells | | | | National Center for Microscopy and Imaging Research (NCMIR) | | | Ribosome illustration from PDB | Active | Illustration | | Ribosomes are complex machines made up of more than 50 proteins and three or four strands of genetic material called ribosomal RNA (rRNA). The busy cellular machines make proteins, which are critical to almost every structure and function in the cell. To do so, they read protein-building instructions, which come as strands of messenger RNA. Ribosomes are found in all forms of cellular life—people, plants, animals, even bacteria. This illustration of a bacterial ribosome was produced using detailed information about the position of every atom in the complex. Several antibiotic medicines work by disrupting bacterial ribosomes but leaving human ribosomes alone. Scientists are carefully comparing human and bacterial ribosomes to spot differences between the two. Structures that are present only in the bacterial version could serve as targets for new antibiotic medications. | | David S. Goodsell and the RCSB PDB | 978 | 1,076,401 | 1,132 | | | ribosome PDB Molecule of the Month David Goodsell organelle | | 244 | 15,508 | 282 | | 489 | 77,089 | 566 | Molecular Structures | | | Labor Day 2016 BB post | From PDB’s Molecule of the Month collection (direct link: http://pdb101.rcsb.org/motm/121) Molecule of the Month illustrations are available under a CC-BY-4.0 license. Attribution should be given to David S. Goodsell and the RCSB PDB. | | | Tongue 1 | Active | Photograph | | Microscopy image of tongue. One in a series of two, see image <a href="/Pages/DetailPage.aspx?imageID2=5811">5811</a> | | Mark Ellisman and Tom Deerinck, NCMIR | 1,125 | 3,189,704 | 1,500 | AZM thinks this is from a mouse, but Tom Deerinck would know for sure. | Mark Ellisman, NCMIR | tongue microscopy NCMIR
| | 281 | 28,311 | 374 | | 562 | 175,731 | 749 | Cells | | | | National Center for Microscopy and Imaging Research (NCMIR) | | | Transferrin receptor binding iron | Active | Illustration | | Transferrin molecules (light gray), each bound by two iron atoms (red), are captured by TbpA proteins (light blue) on the surface of a pathogenic bacterium (left). This image was featured in the <i>Biomedical Beat</i> post <a href=" https://biobeat.nigms.nih.gov/2016/11/metals-in-medicine/">Metals in Medicine</a>. | | Janet Iwasa, University of Utah | | | | | Janet Iwasa, University of Utah | iron transferrin
| | 300 | 66,965 | 308 | | | | | Cells, Molecular Structures | | | BioBeat | Janet Iwasa, University of Utah | | | NCMIR Tongue 2 | Active | Photograph | | Microscopy image of a tongue. One in a series of two, see image <a href="/Pages/DetailPage.aspx?imageID2=5810">5810</a> | | Mark Ellisman and Tom Deerinck, NCMIR | 1,125 | 912,526 | 1,500 | | Mark Ellisman, NCMIR | Tongue microscopy NCMIR | | 281 | 30,795 | 374 | | 562 | 163,617 | 749 | Cells | | | | National Center for Microscopy and Imaging Research (NCMIR) | | | A Growing Bacterial Biofilm | Active | Illustration | | A growing <i>Vibrio cholerae</i> (cholera) biofilm. Cholera bacteria form colonies called biofilms that enable them to resist antibiotic therapy within the body and other challenges to their growth. <br></br>Each slightly curved comma shape represents an individual bacterium from assembled confocal microscopy images. Different colors show each bacterium’s position in the biofilm in relation to the surface on which the film is growing. | | Jing Yan, Ph.D., and Bonnie Bassler, Ph.D., Department of Molecular Biology, Princeton University, Princeton, NJ. | 791 | 135,452 | 914 | A growing Vibrio cholerae biofilm. Each slightly curved comma shape represents an individual bacterium from assembled confocal microscopy images. Different colors show each bacterium’s position in the biofilm in relation to the surface on which the film is growing. Permission email: Bassler, Bonnie L. [bbassler@Princeton.EDU]ReplyReply AllForwardActions<br></br> To: Edie, Scott (NIH/NIGMS) [C] Attachments: Jing_Bassler_biofilm.tif (4 MB) Inbox: Saturday, December 03, 2016 6:17 AM <br></br> Dear Scott Here is the picture. We are delighted you want to use it. Please let me know if you need anything else. The credit is Jing Yan in the Bassler laboratory. Thanks BB <br></br> Link to BioBeat article: <br></br> https://biobeat.nigms.nih.gov/2017/01/cool-image-inside-a-biofilm-build-up/ | Bonnie Bassler, Ph.D., Department of Molecular Biology, Princeton University, Princeton, NJ | antibiotic resistance biofilm cholera | | 197 | 8,288 | 228 | | 395 | 34,056 | 457 | Cells, Molecular Structures, Tools and Techniques | | | | Jing Yan, Ph.D., and Bonnie Bassler, Ph.D., Department of Molecular Biology, Princeton University, Princeton, NJ. | | | Color coding of the Drosophila brain - image | Active | Photograph | | This image results from a research project to visualize which regions of the adult fruit fly (<i>Drosophila</i>) brain derive from each neural stem cell. First, researchers collected several thousand fruit fly larvae and fluorescently stained a random stem cell in the brain of each. The idea was to create a population of larvae in which each of the 100 or so neural stem cells was labeled at least once. When the larvae grew to adults, the researchers examined the flies’ brains using confocal microscopy. With this technique, the part of a fly’s brain that derived from a single, labeled stem cell “lights up. The scientists photographed each brain and digitally colorized its lit-up area. By combining thousands of such photos, they created a three-dimensional, color-coded map that shows which part of the <i>Drosophila</i> brain comes from each of its ~100 neural stem cells. In other words, each colored region shows which neurons are the progeny or “clones” of a single stem cell. This work established a hierarchical structure as well as nomenclature for the neurons in the <i>Drosophila</i> brain. Further research will relate functions to structures of the brain. <Br><Br>Related to image <a href="/Pages/DetailPage.aspx?imageID2=5868">5868</a> and video<a href="/Pages/DetailPage.aspx?imageID2=5843"> 5843</a> | | Yong Wan, Charles Hansen and Chris R. Johnson, University of Utah | 6,664 | 31,186,084 | 6,664 | Acknowledgements: Dr. Kei Ito’s group at the University of Tokyo prepared the biological samples and generated the Drosophila brain data set. FluoRender, developed at the SCI Institute, University of Utah, was used for the visualizations. A 96-channel volumetric Drosophila brain atlas was presented with all its fine details thanks to the collaborations among researchers in biology and computer technologies. Reference: Ito, M., Masuda, N., Shinomiya, K., Endo, K. & Ito, K. (2013). Systematic analysis of neural projections reveals clonal composition of the Drosophila brain. Current Biology, 23(8), 644-655.<br></br> From Yong Wan (wanyong@cs.utah.edu) The software (FluoRender) was initially funded with the R01 GM98151-04 to Charles Hansen (PD Jim Deatherage). That grant ended but now the software is funded through the BTRR to Chris Johnson. Additional Reference: Wan, Y., Otsuna, H., Holman, H. A., Bagley, B., Ito, M., Lewis, A. K., Colasanto, M., Kardon, G., Ito, K. & Hansen, C. FluoRender: joint free-hand segmentation and visualization for many-channel fluorescence data analysis. Manuscript submitted to BMC Bioinformatics | Chris R. Johnson and Charles (“Chuck”) Hansen, University of Utah | Drosophila Fruit fly BTRR Brain | | 308 | 169,818 | 308 | | 3,000 | 3,327,299 | 3,000 | Cells, Tools and Techniques | | | Strathmore Mansion 2017 | Yong Wan from Charles Hansen’s lab, University of Utah. Data preparation and visualization by Masayoshi Ito in the lab of Kei Ito, University of Tokyo. | | | Optic nerve astrocytes | Active | Photograph | | Astrocytes in the cross section of a human optic nerve head | | Keunyoung Kim, Wonkyu Ju, and Mark Ellisman, National Center for Microscopy and Imaging Research, University of California, San Diego. | 2,052 | 17,124,876 | 2,776 | Alisa will contact researcher for permission and other details <br></br>Astrocytes in the cross section of a human optic nerve head: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373968/ <br></br>Grant sponsor: NIH; Grant number: EY018658 (to WKJ), NCRR P41 RR004050 and P41 GM103412-24 (to MHE), P30 EY022589 (to Vision Research Center Core Grant); Grant sponsor: American Heart Association; Grant number: 0840013N (to MH); Grant sponsor: Unrestricted grant from Research to Prevent Blindness (New York, NY). | Keunyoung Kim (CRBS-UCSD) NOTE: source and credit line were blank. Filled in on 2/20/2025 based on other similar entries and the researcher's name here in thsi field. | astrocyte optic nerve eye | | 513 | 93,237 | 694 | | 1,026 | 438,995 | 1,388 | Cells, Molecular Structures | | | | Tom Deerinck and Keunyoung (“Christine”) Kim, NCMIR | | | Dense tubular matrices in the peripheral endoplasmic reticulum (ER) 2 | Active | Photograph | | Three-dimensional reconstruction of a tubular matrix in a thin section of the peripheral endoplasmic reticulum between the plasma membranes of the cell. </br> The endoplasmic reticulum (ER) is a continuous membrane that extends like a net from the envelope of the nucleus outward to the cell membrane. The ER plays several roles within the cell, such as in protein and lipid synthesis and transport of materials between organelles. </br> Shown here are super-resolution microscopic images of the peripheral ER showing the structure of an ER tubular matrix between the plasma membranes of the cell. See image <a href="/Pages/DetailPage.aspx?imageID2=5857">5857</a> for a more detailed view of the area outlined in white in this image. For another view of the ER tubular matrix see image <a href="/Pages/DetailPage.aspx?imageID2=5855">5855</a> | | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia
| 1,953 | 2,300,649 | 2,550 | Original article: Nixon-Abell et al., Science 354, aaf3928 (2016). DOI: 10.1126/science.aaf3928. This image is Figure 3A in that article. <br></br> NIGMS funding to a trainee. <br></br> From: Lippincott-Schwartz, Jennifer [lippincottschwartzj@janelia.hhmi.org] Sent: Sunday, December 04, 2016 10:46 AM<br></br> To: Edie, Scott (NIH/NIGMS) [C]; Cc: Blackstone, Craig (NIH/NINDS) [E] Subject: Re: NIGMS Image gallery request Absolutely, we would be delighted to provide the images. Can these come from the original paper? If so, we can send several of them. Let me know how many you are interested in. Best, Jennifer<br></br>Jennifer Lippincott-Schwartz Group Leader, Howard Hughes Medical Institute - Janelia Research Campus, 19700 Helix Drive, Ashburn, VA 20147, 571 209 4154 lippincottschwartzj@janelia.hhmi.org <br></br> (Note: AAAS was contacted and they indicated their permission for use was not required as the work was NIH funded) | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia | peripheral endoplasmic reticulum ER membrane superresolution microscopy | | 488 | 35,397 | 637 | | 976 | 139,565 | 1,274 | Cells, Molecular Structures | | | | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia | | | Dense tubular matrices in the peripheral endoplasmic reticulum (ER) 1 | Active | Photograph | | Superresolution microscopy work on endoplasmic reticulum (ER) in the peripheral areas of the cell showing details of the structure and arrangement in a complex web of tubes. </br> The ER is a continuous membrane that extends like a net from the envelope of the nucleus outward to the cell membrane. The ER plays several roles within the cell, such as in protein and lipid synthesis and transport of materials between organelles. The ER has a flexible structure to allow it to accomplish these tasks by changing shape as conditions in the cell change. Shown here an image created by super-resolution microscopy of the ER in the peripheral areas of the cell showing details of the structure and the arrangements in a complex web of tubes. Related to images <a href="/Pages/DetailPage.aspx?imageID2=5856">5856</a> and <a href="/Pages/DetailPage.aspx?imageID2=5857">5857</a>. | | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia
| 2,014 | 5,658,665 | 2,550 | Original article: Nixon-Abell et al., Science 354, aaf3928 (2016). DOI: 10.1126/science.aaf3928. This image is Figure 3A in that article. <br></br> NIGMS funding to a trainee <br></br> From: Lippincott-Schwartz, Jennifer [lippincottschwartzj@janelia.hhmi.org] Sent: Sunday, December 04, 2016 10:46 AM<br></br> To: Edie, Scott (NIH/NIGMS) [C]; Cc: Blackstone, Craig (NIH/NINDS) [E] Subject: Re: NIGMS Image gallery request Absolutely, we would be delighted to provide the images. Can these come from the original paper? If so, we can send several of them. Let me know how many you are interested in. Best, Jennifer<br></br>Jennifer Lippincott-Schwartz Group Leader, Howard Hughes Medical Institute - Janelia Research Campus, 19700 Helix Drive, Ashburn, VA 20147, 571 209 4154 lippincottschwartzj@janelia.hhmi.org <br></br> (Note: AAAS was contacted and they indicated their permission for use was not required as the work was NIH funded) | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia | peripheral endoplasmic reticulum ER membrane superresolution microscopy | | 503 | 73,752 | 638 | | 1,007 | 334,147 | 1,275 | Cells, Molecular Structures, Tools and Techniques | | | | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia | | | 3D reconstruction of a tubular matrix in peripheral endoplasmic reticulum | Active | Photograph | | Detailed three-dimensional reconstruction of a tubular matrix in a thin section of the peripheral endoplasmic reticulum between the plasma membranes of the cell. </br> The endoplasmic reticulum (ER) is a continuous membrane that extends like a net from the envelope of the nucleus outward to the cell membrane. The ER plays several roles within the cell, such as in protein and lipid synthesis and transport of materials between organelles. </br> Shown here is a three-dimensional representation of the peripheral ER microtubules. Related to images <a href="/Pages/DetailPage.aspx?imageID2=5855">5855</a> and <a href="/Pages/DetailPage.aspx?imageID2=5856">5856</a> | | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia | 2,565 | 1,487,597 | 2,550 | Original article Nixon-Abell et al., Science 354, aaf3928 (2016). DOI: 10.1126/science.aaf3928. This image is Figure 5Bii in that article. <br></br> NIGMS funding to a trainee. <br></br> From: Lippincott-Schwartz, Jennifer [lippincottschwartzj@janelia.hhmi.org] Sent: Sunday, December 04, 2016 10:46 AM<br></br> To: Edie, Scott (NIH/NIGMS) [C]; Cc: Blackstone, Craig (NIH/NINDS) [E] Subject: Re: NIGMS Image gallery request Absolutely, we would be delighted to provide the images. Can these come from the original paper? If so, we can send several of them. Let me know how many you are interested in. Best, Jennifer<br></br>Jennifer Lippincott-Schwartz Group Leader, Howard Hughes Medical Institute - Janelia Research Campus, 19700 Helix Drive, Ashburn, VA 20147, 571 209 4154 lippincottschwartzj@janelia.hhmi.org <br></br> (Note: AAAS was contacted and they indicated their permission for use was not required as the work was NIH funded) | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia | peripheral endoplasmic reticulum ER membrane superresolution microscopy | | 641 | 41,409 | 637 | | 1,282 | 160,289 | 1,274 | Cells, Molecular Structures | | | | Jennifer Lippincott-Schwartz, Howard Hughes Medical Institute Janelia Research Campus, Virginia | | | Color coding of the Drosophila brain - video | Active | Video | | This video results from a research project to visualize which regions of the adult fruit fly (<i>Drosophila</i>) brain derive from each neural stem cell. First, researchers collected several thousand fruit fly larvae and fluorescently stained a random stem cell in the brain of each. The idea was to create a population of larvae in which each of the 100 or so neural stem cells was labeled at least once. When the larvae grew to adults, the researchers examined the flies’ brains using confocal microscopy. With this technique, the part of a fly’s brain that derived from a single, labeled stem cell “lights up.” The scientists photographed each brain and digitally colorized its lit-up area. By combining thousands of such photos, they created a three-dimensional, color-coded map that shows which part of the <i>Drosophila</i> brain comes from each of its ~100 neural stem cells. In other words, each colored region shows which neurons are the progeny or “clones” of a single stem cell. This work established a hierarchical structure as well as nomenclature for the neurons in the <i>Drosophila</i> brain. Further research will relate functions to structures of the brain. <Br><Br>Related to images <a href="/Pages/DetailPage.aspx?imageID2=5838">5838</a> and <a href="/Pages/DetailPage.aspx?imageID2=5868">5868</a>.
| | Yong Wan, Charles Hansen and Chris R. Johnson, University of Utah | | 45,518,889 | | Acknowledgements: Dr. Kei Ito’s group at the University of Tokyo prepared the biological samples and generated the Drosophila brain data set. FluoRender, developed at the SCI Institute, University of Utah, was used for the visualizations. A 96-channel volumetric Drosophila brain atlas was presented with all its fine details thanks to the collaborations among researchers in biology and computer technologies. Reference: Ito, M., Masuda, N., Shinomiya, K., Endo, K. & Ito, K. (2013). Systematic analysis of neural projections reveals clonal composition of the Drosophila brain. Current Biology, 23(8), 644-655. <br><\br> From Yong Wan (wanyong@cs.utah.edu) The software (FluoRender) was initially funded with the R01 GM98151-04 to Charles Hansen (PD Jim Deatherage). That grant ended but now the software is funded through the BTRR to Chris Johnson. Additional Reference: Wan, Y., Otsuna, H., Holman, H. A., Bagley, B., Ito, M., Lewis, A. K., Colasanto, M., Kardon, G., Ito, K. & Hansen, C. FluoRender: joint free-hand segmentation and visualization for many-channel fluorescence data analysis. Manuscript submitted to BMC Bioinformatics | Chris R. Johnson and Charles (“Chuck”) Hansen, University of Utah | Drosophila Fruit fly BTRR Brain; development; developmental biology
| | 308 | 111,782 | 308 | | | | | Cells, Tools and Techniques | | | Strathmore Mansion 2017 | Yong Wan from Charles Hansen’s lab, University of Utah. Data preparation and visualization by Masayoshi Ito in the lab of Kei Ito, University of Tokyo. | | | Cas9 protein involved in the CRISPR gene-editing technology | Active | Illustration | | In the gene-editing tool CRISPR, a small strand of RNA identifies a specific chunk of DNA. Then the enzyme Cas9 (green) swoops in and cuts the double-stranded DNA (blue/purple) in two places, removing the specific chunk. | | Janet Iwasa for the Innovative Genomics Institute at UC Berkeley | 1,696 | 1,745,559 | 3,000 | Contact for image: Megan Hochstrasser (at the IGI) as the contact (megan.hochstrasser@berkeley.edu< mailto:megan.hochstrasser@berkeley.edu>).<p></p> Hi Jennifer, I was just chatting with Janet Iwasa and she mentioned the CRISPR illustration (pasted below) and animation that she created for you. I know that NIGMS didn’t fund Janet’s work, but would we be able to use it when we write about your NIGMS-funded CRISPR/Cas9 work? We could certainly include whatever credit is appropriate. Specifically, if you happen to get a call from Sweden next week, would NIGMS have permission to use the illustration and/or animation in our Nobel Prize announcement? (By the way, Jon Lorsch loves molecular animations!) We still have the cartoon that we created last year (see https://biobeat.nigms.nih.gov/2015/12/recognition-for-crispr-gene-editing-tool/), but it would be nice to use Janet’s more professional-looking work as well. Please let me know. And if the answer is yes, please let me know how to obtain a copy of the animation. Thanks much. Stay close to the phone on Monday and Wednesday morning (well, 2:30 am your time), Alisa Hi Alisa, I'm delighted for NIGMS to use Janet's fabulous work! The image you have is great, and I will ask Megan Hochstrasser, cc'd here, to send you a link to the video that Janet made for us that illustrates gene editing by CRISPR-Cas9. Thanks for your interest and support, much appreciated. All the best, Jennifer | Janet Iwasa | Cas9 CRISPR DNA gene editing genetics | | 424 | 29,416 | 750 | | 848 | 119,718 | 1,500 | Genes, Tools and Techniques | | | | Janet Iwasa | | | Introduction to Genome Editing Using CRISPR/Cas9 | Active | Video | | Genome editing using CRISPR/Cas9 is a rapidly expanding field of scientific research with emerging applications in disease treatment, medical therapeutics and bioenergy, just to name a few. This technology is now being used in laboratories all over the world to enhance our understanding of how living biological systems work, how to improve treatments for genetic diseases and how to develop energy solutions for a better future. | | Janet Iwasa | | 45,700,206 | | Hi Jennifer, I was just chatting with Janet Iwasa and she mentioned the CRISPR illustration (pasted below) and animation that she created for you. I know that NIGMS didn’t fund Janet’s work, but would we be able to use it when we write about your NIGMS-funded CRISPR/Cas9 work? We could certainly include whatever credit is appropriate. Specifically, if you happen to get a call from Sweden next week, would NIGMS have permission to use the illustration and/or animation in our Nobel Prize announcement? (By the way, Jon Lorsch loves molecular animations!) We still have the cartoon that we created last year (see https://biobeat.nigms.nih.gov/2015/12/recognition-for-crispr-gene-editing-tool/), but it would be nice to use Janet’s more professional-looking work as well. Please let me know. And if the answer is yes, please let me know how to obtain a copy of the animation. Thanks much. Stay close to the phone on Monday and Wednesday morning (well, 2:30 am your time), Alisa Hi Alisa, I'm delighted for NIGMS to use Janet's fabulous work! The image you have is great, and I will ask Megan Hochstrasser, cc'd here, to send you a link to the video that Janet made for us that illustrates gene editing by CRISPR-Cas9. Thanks for your interest and support, much appreciated. All the best, Jennifer | Jennifer Doudna | Cas9 CRISPR DNA gene editing genetics | | | | | | | | | Genes, Tools and Techniques | | | | Janet Iwasa | | | Structure of a key antigen protein involved with Hepatitis C Virus infection | Active | Illustration | | A three-dimensional representation of the structure of E2, a key antigen protein involved with hepatitis C virus infection. | | Courtesy of Mansun Law, The Scripps Research Institute | 2,657 | 5,678,004 | 2,480 | There is a second identical image with a white background rather than a black.<br></br> <br> https://www.ncbi.nlm.nih.gov/pubmed/27791120</br> <br>Proc Natl Acad Sci U S A. 2016 Oct 24. pii: 201609780. [Epub ahead of print]</br> <br>Structural flexibility at a major conserved antibody target on hepatitis C virus E2 antigen.</br> <br>Kong L, Lee DE, Kadam RU, Liu T, Giang E, Nieusma T, Garces F, Tzarum N, Woods VL Jr, Ward AB, Li S, Wilson IA, Law M.</br> <br>Permission:</br <br>From: Mansun Law [mlaw@scripps.edu] Sent: Friday, December 02, 2016 1:48 PM To: Edie, Scott (NIH/NIGMS) [C] Cc: IanWilson; Kong, Leopold (NIH/NIDDK) [F]; Christina Corbaci Subject: RE: NIGMS Image Gallery request</br> <br> Thank you for your interest in our work. We will be happy to provide images to NIGMS. Attached is the TIF files of the E2 image (on two different color backgrounds) you find on our institute’s website. Leo and Christian, the designers of the images, are cc here. If you know which images in our PNAS manuscript that you want in high resolution, pls let us know. < /br> <br>Kind regards, Mansun</br> <br>Mansun Law, Associate Professor</br> <br>Department of Immunolgy and Microbial Science</br> <br> The Scripps Research Institute, 10550 North Torrey Pines Road La Jolla, California, USA</br> Email: mlaw@scripps.edu | Mansun Law, Ph.D., The Scripps Research Institute | HCV hepatitis virus infection three-dimensional protein | | 664 | 43,503 | 619 | | 1,328 | 181,194 | 1,239 | Molecular Structures | | | | Mansun Law Associate Professor Department of Immunolgy and Microbial Science The Scripps Research Institute | | | Color coding of the Drosophila brain - black background | Active | Photograph | | This image results from a research project to visualize which regions of the adult fruit fly (<i>Drosophila</i>) brain derive from each neural stem cell. First, researchers collected several thousand fruit fly larvae and fluorescently stained a random stem cell in the brain of each. The idea was to create a population of larvae in which each of the 100 or so neural stem cells was labeled at least once. When the larvae grew to adults, the researchers examined the flies’ brains using confocal microscopy. </br>With this technique, the part of a fly’s brain that derived from a single, labeled stem cell “lights up.” The scientists photographed each brain and digitally colorized its lit-up area. By combining thousands of such photos, they created a three-dimensional, color-coded map that shows which part of the <i>Drosophila</i> brain comes from each of its ~100 neural stem cells. In other words, each colored region shows which neurons are the progeny or “clones” of a single stem cell. This work established a hierarchical structure as well as nomenclature for the neurons in the <i>Drosophila</i> brain. Further research will relate functions to structures of the brain. <Br><Br>Related to image <a href="/Pages/DetailPage.aspx?imageID2=5838">5838</a> and video<a href="/Pages/DetailPage.aspx?imageID2=5843"> 5843</a>. | | Yong Wan, Charles Hansen and Chris R. Johnson, University of Utah | 6,664 | 3,487,928 | 6,664 | Acknowledgements: Dr. Kei Ito’s group at the University of Tokyo prepared the biological samples and generated the Drosophila brain data set. FluoRender, developed at the SCI Institute, University of Utah, was used for the visualizations. A 96-channel volumetric Drosophila brain atlas was presented with all its fine details thanks to the collaborations among researchers in biology and computer technologies. Reference: Ito, M., Masuda, N., Shinomiya, K., Endo, K. & Ito, K. (2013). Systematic analysis of neural projections reveals clonal composition of the Drosophila brain. Current Biology, 23(8), 644-655. <br></br> From Yong Wan (wanyong@cs.utah.edu) The software (FluoRender) was initially funded with the R01 GM98151-04 to Charles Hansen (PD Jim Deatherage). That grant ended but now the software is funded through the BTRR to Chris Johnson. Additional Reference: Wan, Y., Otsuna, H., Holman, H. A., Bagley, B., Ito, M., Lewis, A. K., Colasanto, M., Kardon, G., Ito, K. & Hansen, C. FluoRender: joint free-hand segmentation and visualization for many-channel fluorescence data analysis. Manuscript submitted to BMC Bioinformatics | Chris R. Johnson and Charles (“Chuck”) Hansen, University of Utah
| Drosophila Fruit fly BTRR Brain; development; developmental biology | | 1,666 | 220,824 | 1,666 | | 3,332 | 831,643 | 3,332 | Cells, Tools and Techniques | | | Strathmore Mansion 2017 | Yong Wan from Charles Hansen’s lab, University of Utah. Data preparation and visualization by Masayoshi Ito in the lab of Kei Ito, University of Tokyo. | | | LONI movie | Inactive | Video | | | | | | 178,434,963 | | | | brain MRI | | | | | | | | | Tools and Techniques | | | | | | | Bacteriophage P22 capsid | Active | Illustration | | Cryo-electron microscopy (cryo-EM) has the power to capture details of proteins and other small biological structures at the molecular level. This image shows proteins in the capsid, or outer cover, of bacteriophage P22, a virus that infects the <i>Salmonella</i> bacteria. Each color shows the structure and position of an individual protein in the capsid. Thousands of cryo-EM scans capture the structure and shape of all the individual proteins in the capsid and their position relative to other proteins. A computer model combines these scans into the three-dimension image shown here. Related to image <a href="/Pages/DetailPage.aspx?imageID2=5875">5875</a>. | | C. Hryc and the Chiu Lab, Baylor College of Medicine | 1,557 | 3,375,362 | 2,000 | Supporting Grants: R01 GM079429; P41 GM103832; P01 GM063210 <br></br>Journal Article: http://www.pnas.org/content/114/12/3103.long <br></br> Permission: Reply: 4/24/2017 From: Chiu, Wah [wah@bcm.edu] To: Edie, Scott (NIH/NIGMS) [C] Cc: Corey Hryc [cfhryc@gmail.com] Re: NIGMS request for permission to use images Dear Scott Corey Hryc will send you the high quality files shortly. Thank you for including our work in your gallery. Regards Wah | Dr. Wah Chiu, Baylor College of Medicine | bacteriophage P22 capsid protein cryo-EM cryo electron microscopy
| | 389 | 37,134 | 499 | | 778 | 215,197 | 999 | Cells, Molecular Structures, Tools and Techniques | | | BioBeat | Dr. Wah Chiu, Baylor College of Medicine | | | Mouse retina close-up | Active | Photograph | | | | Keunyoung Kim, Wonkyu Ju and Mark Ellisman, National Center for Microscopy and Imaging Research, University of California, San Diego. | 4,412 | 26,915,911 | 6,000 | | | eye | | 1,103 | 418,089 | 1,500 | | 2,206 | 1,857,965 | 3,000 | Cells | | | BioBeat | Keunyoung ("Christine") Kim National Center for Microscopy and Imaging Research (NCMIR) | | | LONI movie screenshot | Inactive | Photograph | | | | | 736 | 604,519 | 1,053 | | | brain MRI | | 183 | 6,005 | 263 | | 367 | 32,439 | 526 | Tools and Techniques | | | | | | | Bacteriophage P22 capsid, detail | Active | Illustration | | Detail of a subunit of the capsid, or outer cover, of bacteriophage P22, a virus that infects the <i>Salmonella</i> bacteria. Cryo-electron microscopy (cryo-EM) was used to capture details of the capsid proteins, each shown here in a separate color. Thousands of cryo-EM scans capture the structure and shape of all the individual proteins in the capsid and their position relative to other proteins. A computer model combines these scans into the image shown here. Related to image <a href="/Pages/DetailPage.aspx?imageID2=5874">5874</a>. | | C. Hryc and the Chiu Lab, Baylor College of Medicine | 1,758 | 1,758,151 | 2,000 | Supporting Grants: R01 GM079429; P41 GM103832; P01 GM063210<br></br> Journal Article: http://www.pnas.org/content/114/12/3103.long <br></br> Reply: 4/24/2017 From: Chiu, Wah [wah@bcm.edu] To: Edie, Scott (NIH/NIGMS) [C] Cc: Corey Hryc [cfhryc@gmail.com] Re: NIGMS request for permission to use images Dear Scott Corey Hryc will send you the high quality files shortly. Thank you for including our work in your gallery. Regards Wah | Dr. Wah Chiu, Baylor College of Medicine | capsid bacteriophage P22 cryo-EM cryo-electron microscopy protein | | 439 | 32,409 | 500 | | 879 | 147,478 | 1,000 | Cells, Molecular Structures, Tools and Techniques | | | | Dr. Wah Chiu, Baylor College of Medicine | | | Misfolded proteins within in the mitochondria | Active | Photograph | | | | Erli Jin and Linhao Ruan/Johns Hopkins Medicine | 939 | 178,674 | 1,008 | | Rong Li rong@jhu.edu Department of Chemical and Biomolecular Engineering, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA. | mitochondria protein
| | 234 | 3,298 | 252 | | 469 | 10,697 | 504 | Cells | | | | Rong Li rong@jhu.edu Department of Chemical and Biomolecular Engineering, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA. | | | Misfolded proteins in mitochondria, 3-D video | Active | Video | | Three-dimensional image of misfolded proteins (green) within mitochondria (red). Related to image <a href="/Pages/DetailPage.aspx?imageID2=5878">5878</a>. Learn more in this <a href=" https://www.eurekalert.org/pub_releases/2017-03/jhm-icu022817.php">press release</a> by The American Association for the Advancement of Science. | | Erli Jin and Linhao Ruan, Johns Hopkins Medicine | | 1,630,891 | | | Rong Li, Department of Chemical and Biomolecular Engineering, Whiting School of Engineering, Johns Hopkins University
| mitochondria protein 3-d image video | | | | | | | | | Cells | | | | Rong Li, Department of Chemical and Biomolecular Engineering, Whiting School of Engineering, Johns Hopkins University | | | Zebrafish larva | Active | Photograph | | You are face to face with a 6-day-old zebrafish larva. What look like eyes will become nostrils, and the bulges on either side will become eyes. Scientists use fast-growing, transparent zebrafish to see body shapes form and organs develop over the course of just a few days. Images like this one help researchers understand how gene mutations can lead to facial abnormalities such as cleft lip and palate in people. <br></br> This image won a 2016 FASEB BioArt award. In addition, NIH Director Francis Collins featured this on his blog on January 26, 2017. See <a href= https://directorsblog.nih.gov/2017/01/26/snapshots-of-life-coming-face-to-face-with-development> Snapshots of Life: Coming Face to Face with Development</a> | | Oscar Ruiz and George Eisenhoffer, University of Texas MD Anderson Cancer Center, Houston | 1,761 | 13,074,304 | 2,470 | | | development; developmental biology | | 423 | 255,277 | 593 | | 881 | 956,094 | 1,235 | Cells, Genes | | | | Oscar Ruiz and George Eisenhoffer, University of Texas MD Anderson Cancer Center, Houston
| | | Beta-galactosidase montage showing cryo-EM improvement--gradient background | Active | Illustration | | | | Veronica Falconieri, Sriram Subramaniam Lab, National Cancer Institute
| 1,235 | 1,088,902 | 1,575 | <br></br> Permission \From: Subramaniam, Sriram (NIH/NCI) [E] Sent: Tuesday, May 09, 2017 2:45 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] < MachaleA@nigms.nih.gov>; Falconieri, Veronica (NIH/NCI) [F] < veronica.falconieri@nih.gov> Subject: Re: High res version of cryo-EM composite image? Alisa, Yes, it is in the public domain and you can use it as long as you attribute it properly to our lab, so that anyone re-using it knows where it came from. Thanks, Sriram | Source: Veronica Falconieri, Sriram Subramaniam Lab, National Cancer Institute
| enzyme, beta-galactosidase, protein, cryo-electron microscopy | | 308 | 21,084 | 394 | | 617 | 93,490 | 788 | Cells, Molecular Structures, Tools and Techniques | | | | Veronica Falconieri, Sriram Subramaniam Lab, National Cancer Institute | | | Beta-galactosidase montage showing cryo-EM improvement--transparent background | Active | Illustration | | | | Veronica Falconieri, Sriram Subramaniam Lab, National Cancer Institute | 965 | 1,903,294 | 1,363 | <br></br> Permission<br></br> From: Subramaniam, Sriram (NIH/NCI) [E] Sent: Tuesday, May 09, 2017 2:45 PM To: Machalek, Alisa Zapp (NIH/NIGMS) [E] < MachaleA@nigms.nih.gov>; Falconieri, Veronica (NIH/NCI) [F] < veronica.falconieri@nih.gov> Subject: Re: High res version of cryo-EM composite image? <br></br> Alisa, Yes, it is in the public domain and you can use it as long as you attribute it properly to our lab, so that anyone re-using it knows where it came from. Thanks, Sriram | Veronica Falconieri, Sriram Subramaniam Lab, National Cancer Institute | enzyme, beta-galactosidase, protein, cryo-electron microscopy | | 248 | 216,045 | 350 | | 496 | 674,937 | 700 | Cells, Molecular Structures, Tools and Techniques | | | | Veronica Falconieri, Sriram Subramaniam Lab, National Cancer Institute | | | 3-D Architecture of a Synapse | Active | Photograph | | This image shows the structure of a synapse, or junction between two nerve cells in three dimensions. From the brain of a mouse. | | Anton Maximov, The Scripps Research Institute, La Jolla, CA | 3,717 | 2,215,052 | 3,417 | Internal Note: Neuron. 2017 Apr 19;94(2):312-321.e3. doi: 10.1016/j.neuron.2017.03.047. Assembly of Excitatory Synapses in the Absence of Glutamatergic Neurotransmission. Sando R1, Bushong E2, Zhu Y3, Huang M1, Considine C3, Phan S2, Ju S2, Uytiepo M3, Ellisman M2, Maximov A4.<br></br> Anton Maximov amaximov@scripps.edu<br></br> Maximov image permission From: Anton Maximov [amaximov@scripps.edu] Sent: Thursday, May 18, 2017 9:44 AM To: Edie, Scott (NIH/NIGMS) [C]; Nancy Wentworth Subject: Re: NIGMS/NIH query about availability of images | Anton Maximov, The Scripps Research Institute, La Jolla, CA | synapse neurotransmission neurotrnasmitter SEM nerve cell brain
| | 928 | 45,233 | 854 | | 1,857 | 168,732 | 1,708 | Cells, Molecular Structures | | 6/1/2017 | | Anton Maximov, The Scripps Research Institute, La Jolla, CA | | | Plasma-Derived Membrane Vesicles | Active | Photograph | | This fiery image doesn’t come from inside a bubbling volcano. Instead, it shows animal cells caught in the act of making bubbles, or blebbing. Some cells regularly pinch off parts of their membranes to produce bubbles filled with a mix of proteins and fats. The bubbles (red) are called plasma-derived membrane vesicles, or PMVs, and can travel to other parts of the body where they may aid in cell-cell communication. The University of Texas, Austin, researchers responsible for this photo are exploring ways to use PMVs to deliver medicines to precise locations in the body.<br></br> This image, entered in the Biophysical Society’s 2017 Art of Science Image contest, used two-channel spinning disk confocal fluorescence microscopy. It was also featured in the <a href=" https://directorsblog.nih.gov/2017/05/11/snapshots-of-life-biological-bubble-machine/">NIH Director’s Blog</a> in May 2017. | | Chi Zhao, David Busch, Connor Vershel, Jeanne Stachowiak, University of Texas at Austin | 800 | 496,953 | 800 | NIH Grant: GM112065 | Jeanne Stachowiak, University of Texas at Austin | drug delivery blebbing plasma vesicle membrane plasma-derived PMV two-channel spinning disk confocal fluorescence microscopy | | 200 | 6,066 | 200 | | 400 | 27,397 | 400 | Cells, Tools and Techniques | | | BioBeat | Jeanne Stachowiak, University of Texas at Austin | | | Mouse Brain Cross Section | Active | Photograph | | The brain sections are treated with fluorescent antibodies specific to a particular protein and visualized using serial electron microscopy (SEM). | | Anton Maximov, The Scripps Research Institute, La Jolla, CA | 2,483 | 2,735,980 | 2,483 | Neuron. 2017 Apr 19;94(2):312-321.e3. doi: 10.1016/j.neuron.2017.03.047. Assembly of Excitatory Synapses in the Absence of Glutamatergic Neurotransmission. Sando R1, Bushong E2, Zhu Y3, Huang M1, Considine C3, Phan S2, Ju S2, Uytiepo M3, Ellisman M2, Maximov A4.<br></br> Anton Maximov amaximov@scripps.edu<br></br> Maximov image permission From: Anton Maximov [amaximov@scripps.edu] Sent: Thursday, May 18, 2017 9:44 AM To: Edie, Scott (NIH/NIGMS) [C]; Nancy Wentworth Subject: Re: NIGMS/NIH query about availability of images | Anton Maximov, The Scripps Research Institute, La Jolla, CA | | | 620 | 45,417 | 620 | | 1,241 | 205,102 | 1,241 | Cells, Tools and Techniques | | 6/1/2017 | | Anton Maximov, The Scripps Research Institute, La Jolla, CA | | | Independence Day | Active | Photograph | | This graphic that resembles a firework was created from a picture of a <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3451>fruit fly spermatid</a>. This fruit fly spermatid recycles various molecules, including malformed or damaged proteins. Actin filaments (red) in the cell draw unwanted proteins toward a barrel-shaped structure called the proteasome (green clusters), which degrades the molecules into their basic parts for re-use. | | Sigi Benjamin-Hong, Rockefeller University | 600 | 70,443 | 600 | | Sigi Benjamin-Hong, Rockefeller University | fireworks, july 4th | | 600 | 70,443 | 600 | | 300 | 11,584 | 300 | Cells, Chemistry, Biochemistry, and Pharmacology | | | | Sigi Benjamin-Hong, Rockefeller University | | | Bioluminescence in a Tube | Active | Photograph | | | | Nathan Shaner, Scintillon Institute | 1,907 | 2,064,351 | 4,050 | | | bioluminescense luciferin luciferase | | 476 | 32,468 | 1,012 | | 953 | 134,808 | 2,025 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | | BioBeat | Nathan Shaner, Scintillon Institute | | | Stetten Lecture 2017poster image | Active | Illustration | | This image is featured on the poster for Dr. Rommie Amaro's 2017 Stetten Lecture. It depicts a detailed physical model of an influenza virus, incorporating information from several structural data sources. The small molecules around the virus are sialic acid molecules. The virus binds to and cleaves sialic acid as it enters and exits host cells. Researchers are building these highly detailed molecular scale models of different biomedical systems and then “bringing them to life” with physics-based methods, either molecular or Brownian dynamics simulations, to understand the structural dynamics of the systems and their complex interactions with drug or substrate molecules. | | Dr. Rommie Amaro, University of California, San Diego | 3,600 | 58,347,524 | 5,400 | | Dr. Rommie Amaro, University of California, San Diego | Influenza Stetten Lecture Virus model | | 900 | 101,038 | 1,350 | | 1,800 | 420,054 | 2,700 | Molecular Structures | | | | Dr. Rommie Amaro, University of California, San Diego | | | Drosophila | Active | Photograph | | Two adult fruit flies (Drosophila) | | Courtesy of MDI Biological Laboratory | 1,570 | 334,340 | 2,048 | Permission 11/6/17 : Hi Alisa — Thank you for your interest. Please feel free to use the image: the credit, should you need to use one, is MDI Biological Laboratory. We would definitely like a link to the Congressional Budget Justification document. We are thrilled to be included! Please let me know if there’s anything else I can do to help. Best, Stefanie
| | fruit fly drosophila | | 392 | 14,809 | 511 | | 785 | 59,860 | 1,024 | Cells | | | | | | | Human Adenovirus | Active | Illustration | | The cryo-EM structure of human adenovirus D26 (HAdV-D26) at near atomic resolution (3.7 Å), determined in collaboration with the NRAMM facility*. In difference to archetype HAdV-C5, the HAdV-D26 is a low seroprevalent viral vector, which is being used to generate Ebola virus vaccines.
| | National Resource for Automated Molecular Microscopy
| 1,059 | 261,285 | 960 | | See: Yu, X., D. Veesler, M. G. Campbell, M. E. Barry, F. J. Asturias, M. A. Barry, and V. S. Reddy. 2017. Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses. Sci Adv 3:e1602670. | Human Adenovirus DNA Cryo-EM cryo-electron microscopy | | 264 | 13,438 | 240 | | 529 | 60,743 | 480 | Cells, Molecular Structures, Tools and Techniques | | | | | | | Intasome | Active | Illustration | | Salk researchers captured the structure of a protein complex called an intasome (center) that lets viruses similar to HIV establish permanent infection in their hosts. The intasome hijacks host genomic material, DNA (white) and histones (beige), and irreversibly inserts viral DNA (blue). The image was created by Jamie Simon and Dmitry Lyumkis. Work that led to the 3D map was published in: Ballandras-Colas A, Brown M, Cook NJ, Dewdney TG, Demeler B, Cherepanov P, Lyumkis D, & Engelman AN. (2016). Cryo-EM reveals a novel octameric integrase structure for ?-retroviral intasome function. Nature, 530(7590), 358—361
| | NRAMM National Resource for Automated Molecular Microscopy
| 1,483 | 351,320 | 2,563 | | | retrovirus HIV instasome DNA cryo-electron microscopy | | 370 | 17,352 | 641 | | 741 | 76,251 | 1,282 | Cells, Molecular Structures, Tools and Techniques | | | | | | | CRISPR | Active | Illustration | | RNA incorporated into the CRISPR surveillance complex is positioned to scan across foreign DNA. Cryo-EM density from a 3Å reconstruction is shown as a yellow mesh. | | NRAMM National Resource for Automated Molecular Microscopy
| 626 | 263,434 | 2,400 | | See: Chowdhury, S., J. Carter, M. F. Rollins, S. M. Golden, R. N. Jackson, C. Hoffmann, L. Nosaka, J. Bondy-Denomy, K. L. Maxwell, A. R. Davidson, E. R. Fischer, G. C. Lander, and B. Wiedenheft. 2017. Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex. Cell 169:47-57 e11. | CRISPR cryo-EM RNA DNA gene editing cryo-electron microscopy | | 156 | 15,974 | 598 | | 313 | 64,208 | 1,200 | Cells, Molecular Structures, Tools and Techniques | | | | | | | Aldolase | Active | Photograph | | 2.5Å resolution reconstruction of rabbit muscle aldolase collected on a FEI/Thermo Fisher Titan Krios with energy filter and image corrector.
| | National Resource for Automated Molecular Microscopy | 1,050 | 176,105 | 1,050 | | | Rabbit muscle cryo-TEM enzyme cryo-transmission electron microscopy | | 262 | 8,911 | 262 | | 525 | 39,379 | 525 | Cells, Molecular Structures | | | | | | | CRISPR surveillance complex | Active | Illustration | | This image shows how the CRISPR surveillance complex is disabled by two copies of anti-CRISPR protein AcrF1 (red) and one AcrF2 (light green). These anti-CRISPRs block access to the CRISPR RNA (green tube) preventing the surveillance complex from scanning and targeting invading viral DNA for destruction. | | NRAMM National Resource for Automated Molecular Microscopy
| 1,052 | 201,016 | 840 | | See: Chowdhury, S., J. Carter, M. F. Rollins, S. M. Golden, R. N. Jackson, C. Hoffmann, L. Nosaka, J. Bondy-Denomy, K. L. Maxwell, A. R. Davidson, E. R. Fischer, G. C. Lander, and B. Wiedenheft. 2017. Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex. Cell 169:47-57 e11. | CRISPR Anti-CRISPR viral DNA gene editing | | 263 | 9,936 | 210 | | 526 | 44,526 | 420 | Cells, Molecular Structures, Tools and Techniques | | | | | | | ATP Synthase | Active | Illustration | | Atomic model of the membrane region of the mitochondrial ATP synthase built into a cryo-EM map at 3.6 Å resolution. ATP synthase is the primary producer of ATP in aerobic cells. Drugs that inhibit the bacterial ATP synthase, but not the human mitochondrial enzyme, can serve as antibiotics. This therapeutic approach was successfully demonstrated with the bedaquiline, an ATP synthase inhibitor now used in the treatment of extensively drug resistant tuberculosis. <Br><Br>More information about this structure can be found in the <em>Science</em> paper <a href=" https://pubmed.ncbi.nlm.nih.gov/29074581/">”Atomic model for the dimeric F0 region of mitochondrial ATP synthase”</a> by Guo et. al. | | NRAMM National Resource for Automated Molecular Microscopy
| 1,055 | 350,984 | 1,830 | | See: Guo, H., S. A. Bueler, and J. L. Rubinstein. 2017. Atomic model for the dimeric FO region of mitochondrial ATP synthase. Science. | ATP Synthase mitochondria tuberculosis bedaquiline atomic model antibiotic cryo-EM TB cryo-electron microscopy adenosine triphosphate | | 264 | 17,430 | 457 | | 527 | 78,487 | 915 | Cells, Molecular Structures, Tools and Techniques | | | | Bridget Carragher, <a href=" http://nramm.nysbc.org/">NRAMM National Resource for Automated Molecular Microscopy</a> | | | H1N1 Influenza Virus | Active | Illustration | | CellPack image of the H1N1 influenza virus, with hemagglutinin and neuraminidase glycoproteins in green and red, respectively, on the outer envelope (white); matrix protein in gray, and ribonucleoprotein particles inside the virus in red and green. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6356">6356</a>. | | Dr. Rommie Amaro, University of California, San Diego
| 2,048 | 9,448,426 | 2,048 | | Dr. Rommie Amaro, University of California, San Diego
| H1N1 influenza virus CellPack hemagluttinin neuraminidase glycoproteins Flu Snowflake | | 512 | 36,123 | 512 | | 1,024 | 152,927 | 1,024 | Cells, Molecular Structures | | | | Dr. Rommie Amaro, University of California, San Diego
| | | H1N1 Influenza Virus | Active | Illustration | | | | Dr. Rommie Amaro, University of California, San Diego | 2,048 | 9,793,414 | 2,048 | | Dr. Rommie Amaro, University of California, San Diego | H1N1 Influenza virus Flu hemagluttinin neuraminidase glycoproteins Snowflake | | 512 | 31,711 | 512 | | 1,024 | 144,270 | 1,024 | Cells, Molecular Structures | | | BioBeat | Dr. Rommie Amaro, University of California, San Diego | | | Blood Clot | Active | Photograph | | | | Mark Ellisman and Thomas Deerinck National Center for Microscopy and Imaging Research University of California, San Diego
| 2,953 | 6,947,127 | 3,937 | | | blood clot red blood cells erythrocytes | | 738 | 125,751 | 983 | | 1,476 | 570,227 | 1,967 | Cells | | 3/13/2018 | | Thomas Deerinck, NCMIR | | | Red and white blood cells in the lung | Active | Photograph | | | | Mark Ellisman and Thomas Deerinck National Center for Microscopy and Imaging Research University of California, San Diego
| 2,400 | 1,528,799 | 3,200 | | | red blood cells; white blood cells; lung cells; red and white blood cells in lung | | 600 | 107,713 | 800 | | 1,200 | 495,393 | 1,600 | Cells | | 3/13/2018 | | Thomas Deerinck, NCMIR | | | E. Coli | Active | Photograph | | | | Mark Ellisman and Thomas Deerinck National Center for Microscopy and Imaging Research University of California, San Diego
| 1,924 | 875,757 | 2,745 | | | E. Coli Escherichia coli bacteria | | 480 | 31,104 | 686 | | 961 | 207,711 | 1,372 | Cells | | 3/13/2018 | | Thomas Deerinck, NCMIR | | | CRISPR Illustration Frame 1 | Active | Illustration | | | | National Institute of General Medical Sciences. | 746 | 146,990 | 746 | created for NIGMS by Crabtree & Co. Jennifer Doudna OK'ed it Frames separated into files by CSR, Inc. | | CRISPR | | 284 | 57,409 | 308 | | 373 | 13,394 | 373 | Genes, Tools and Techniques | | 2/6/2019 | BioBeat | National Institute of General Medical Sciences. | | | CRISPR Illustration Frame 2 | Active | Illustration | | | | National Institute of General Medical Sciences. | 746 | 237,923 | 746 | created for NIGMS by Crabtree & Co. Jennifer Doudna OK'ed it
| | | | 284 | 90,194 | 308 | | 373 | 20,498 | 373 | Genes, Tools and Techniques | | 12/16/2015 | BioBeat | National Institute of General Medical Sciences. | | | CRISPR Illustration Frame 3 | Active | Illustration | | | | National Institute of General Medical Sciences. | 746 | 167,233 | 746 | created for NIGMS by Crabtree & Co. Jennifer Doudna OK'ed it
| | | | 284 | 69,680 | 308 | | 373 | 13,924 | 373 | Genes, Tools and Techniques | | 12/16/2015 | BioBeat | National Institute of General Medical Sciences. | | | CRISPR Illustration Frame 4 | Active | Illustration | | | | National Institute of General Medical Sciences. | 746 | 192,396 | 746 | created for NIGMS by Crabtree & Co. Jennifer Doudna OK'ed it
| | | | 284 | 76,464 | 308 | | 373 | 15,954 | 373 | Genes, Tools and Techniques | | 12/16/2015 | BioBeat | National Institute of General Medical Sciences. | | | CRISPR Illustration Frame 5 | Active | Illustration | | | | National Institute of General Medical Sciences, National Institutes of Health | 745 | 323,003 | 1,634 | created for NIGMS by Crabtree & Co. Jennifer Doudna OK'ed it
| | | | 186 | 10,105 | 407 | | 372 | 39,940 | 815 | Genes, Tools and Techniques | | 12/16/2015 | BioBeat | | | | Arabidopsis Thaliana: Flowers Spring to Life | Active | Photograph | | This image capture shows how a single gene, STM, plays a starring role in plant development. This gene acts like a molecular fountain of youth, keeping cells ever-young until it’s time to grow up and commit to making flowers and other plant parts. Because of its ease of use and low cost, <i>Arabidopsis</i> is a favorite model for scientists to learn the basic principles driving tissue growth and regrowth for humans as well as the beautiful plants outside your window. Image captured from video Watch Flowers Spring to Life, featured in the <a href=" https://directorsblog.nih.gov/2019/04/25/watch-flowers-spring-to-life/">NIH Director's Blog: Watch Flowers Spring to Life.</a> | | Nathanaël Prunet, Ph.D., University of California, Los Angeles; California Institute of Technology, Pasadena; and Howard Hughes Medical Institute. Elliot Meyerowitz, Ph.D., California Institute of Technology, Pasadena; Howard Hughes Medical Institute Member: Society for Developmental Biology; Genetics Society of America. Luciano Lucas, Ph.D., DRVISION Technologies, Bellevue, WA | 1,969 | 1,087,722 | 3,016 | | | Arabidopsis thaliana; Flowers; Spring; Spring to Life | | 492 | 21,866 | 753 | | 813 | 334,384 | 1,104 | Cells, Genes | | 4/26/2019 | | Nathanaёl Prunet NIH Support: National Institute of General Medical Sciences | | | HIV animation | Inactive | Video | | How does HIV infection occur? This molecular animation depicts the process of how HIV infects a T cell and transforms the cell into a viral factory. Completed in collaboration with dozens of HIV researchers across the United States, this film is part of the Science of HIV project (scienceofHIV.org), with support from the CHEETAH Center at the University of Utah (cheetah.biochem.utah.edu/) and the NIGMS. Please feel free to download and share this animation, and visit the Science of HIV website (scienceofHIV.org) for more information. To view a version of this animation with narration, see: vimeo.com/260291607/5bcaf19961
| | | 0 | | 0 | | Animated and narrated by Janet Iwasa (Department of Biochemistry, University of Utah) | AIDS | | | | | | | | | Cells, Molecular Structures, Tools and Techniques | | | | http://scienceofhiv.org/ Animated and narrated by Janet Iwasa (Department of Biochemistry, University of Utah) Music written and performed by Joshua Roman Music recorded by Jesse Lewis (Immersive Music Project) | | | Biofilm formed by a pathogen | Active | Photograph | | A biofilm is a highly organized community of microorganisms that develops naturally on certain surfaces. These communities are common in natural environments and generally do not pose any danger to humans. Many microbes in biofilms have a positive impact on the planet and our societies. Biofilms can be helpful in treatment of wastewater, for example. This dime-sized biofilm, however, was formed by the opportunistic pathogen <i>Pseudomonas aeruginosa</i>. Under some conditions, this bacterium can infect wounds that are caused by severe burns. The bacterial cells release a variety of materials to form an extracellular matrix, which is stained red in this photograph. The matrix holds the biofilm together and protects the bacteria from antibiotics and the immune system. | | Scott Chimileski, Ph.D., and Roberto Kolter, Ph.D., Harvard Medical School. | 2,000 | 3,011,812 | 2,000 | | | | | 400 | 206,876 | 400 | | 800 | 626,183 | 800 | Cells | | | BioBeat | Scott Chimileski, Ph.D., and Roberto Kolter, Ph.D., Harvard Medical School. | | | Human fibroblast undergoing cell division | Active | Photograph | | During cell division, cells physically divide after separating their genetic material to create two daughter cells that are genetically identical to the parent cell. This process is important so that new cells can grow and develop. In this image, a human fibroblast cell—a type of connective tissue cell that plays a key role in wound healing and tissue repair—is dividing into two daughter cells. A cell protein called actin appears gray, the myosin II (part of the family of motor proteins responsible for muscle contractions) appears green, and DNA appears magenta. | | Nilay Taneja, Vanderbilt University, and Dylan T. Burnette, Ph.D., Vanderbilt University School of Medicine. | 1,968 | 3,139,555 | 2,000 | | | mitosis | | 394 | 286,228 | 400 | | 787 | 857,096 | 800 | Cells | | | | Nilay Taneja, Vanderbilt University, and Dylan T. Burnette, Ph.D., Vanderbilt University School of Medicine. | | | HeLa cell undergoing division into two daughter cells | Active | Photograph | | Here, a human HeLa cell (a type of immortal cell line used in laboratory experiments) is undergoing cell division. They come from cervical cancer cells that were obtained in 1951 from Henrietta Lacks, a patient at the Johns Hopkins Hospital. The final stage of division, called cytokinesis, occurs after the genomes—shown in yellow—have split into two new daughter cells. The myosin II is a motor protein shown in blue, and the actin filaments, which are types of protein that support cell structure, are shown in red. Read more about <a href=" https://directorsblog.nih.gov/2013/08/07/hela-cells-a-new-chapter-in-an-enduring-story/">NIH and the Lacks family</a>. | | Dylan T. Burnette, Ph.D., Vanderbilt University School of Medicine. | 2,000 | 2,553,951 | 2,000 | | | mitosis chromosomes | | 400 | 321,928 | 400 | | 800 | 824,974 | 800 | Cells | | | | Dylan T. Burnette, Ph.D., Vanderbilt University School of Medicine. | | | Yeast art depicting the New York City skyline | Active | Photograph | | This skyline of New York City was created by “printing” nanodroplets containing yeast (<i>Saccharomyces cerevisiae</i>) onto a large plate. Each dot is a separate yeast colony. As the colonies grew, a picture emerged, creating art. To make the different colors shown here, yeast strains were genetically engineered to produce pigments naturally made by bacteria, fungi, and sea creatures such as coral and sea anemones. Using genes from other organisms to make biological compounds paves the way toward harnessing yeast in the production of other useful molecules, from food to fuels and drugs. | | Michael Shen, Ph.D., Jasmine Temple, Leslie Mitchell, Ph.D., and Jef Boeke, Ph.D., New York University School of Medicine; and Nick Phillips, James Chuang, Ph.D., and Jiarui Wang, Johns Hopkins University. | 1,475 | 2,698,400 | 2,000 | | | | | 295 | 234,219 | 400 | | 590 | 690,949 | 800 | Cells | | | | Michael Shen, Ph.D., Jasmine Temple, Leslie Mitchell, Ph.D., and Jef Boeke, Ph.D., New York University School of Medicine; and Nick Phillips, James Chuang, Ph.D., and Jiarui Wang, Johns Hopkins University. | | | Fruit fly ovary | Active | Photograph | | In this image of a stained fruit fly ovary, the ovary is packed with immature eggs (with DNA stained blue). The cytoskeleton (in pink) is a collection of fibers that gives a cell shape and support. The signal-transmitting molecules like STAT (in yellow) are common to reproductive processes in humans. Researchers used this image to show molecular staining and high-resolution imaging techniques to students. | | Crystal D. Rogers, Ph.D., University of California, Davis, School of Veterinary Medicine, and Mariano A. Loza-Coll, Ph.D., California State University, Northridge. | 1,605 | 3,032,123 | 2,000 | | | drosophila | | 401 | 22,529 | 499 | | 802 | 113,884 | 999 | Cells | | | BioBeat | Crystal D. Rogers, Ph.D., University of California, Davis, School of Veterinary Medicine; and Mariano A. Loza-Coll, Ph.D., California State University, Northridge. | | | Mosaicism in C. elegans (Black Background) | Active | Photograph | | In the worm <i>C. elegans</i>, double-stranded RNA made in neurons can silence matching genes in a variety of cell types through the transport of RNA between cells. The head region of three worms that were genetically modified to express a fluorescent protein were imaged and the images were color-coded based on depth. The worm on the left lacks neuronal double-stranded RNA and thus every cell is fluorescent. In the middle worm, the expression of the fluorescent protein is silenced by neuronal double-stranded RNA and thus most cells are not fluorescent. The worm on the right lacks an enzyme that amplifies RNA for silencing. Surprisingly, the identities of the cells that depend on this enzyme for gene silencing are unpredictable. As a result, worms of identical genotype are nevertheless random mosaics for how the function of gene silencing is carried out. For more, see <a href=" https://academic.oup.com/nar/article/47/19/10059/5563947">journal article</a> and <a href=" https://umdrightnow.umd.edu/news/umd-scientists-discover-hidden-differences-may-help-cells-evade-drug-therapy">press release.</a> Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6534">6534</a>. | | Snusha Ravikumar, Ph.D., University of Maryland, College Park, and Antony M. Jose, Ph.D., University of Maryland, College Park | 2,133 | 1,062,946 | 2,133 | Here is the caption from the news release: This image of three worms illustrates functional mosaicism in action. The worms have been genetically modified to express a fluorescent protein that appears as colorful glowing dots. The worm on the left shows fluorescence in every cell. In the middle worm, intestinal cells do not fluoresce because a protein that blocks the fluorescent gene has caused RNA interference (RNAi). In the worm on the right, scientists have removed the enzyme previously believed to be responsible for RNAi in intestinal cells, but fluorescence remains blocked in some of those cells, suggesting that RNAi is being carried out by another enzyme. | | | | 512 | 178,676 | 512 | | 1,067 | 457,545 | 1,067 | Cells, Genes | | | | Snusha Ravikumar, Ph.D., University of Maryland, College Park, and Antony M. Jose, Ph.D., University of Maryland, College Park | | | Mosaicism in C. elegans (White Background) | Active | Photograph | | In the worm <i>C. elegans</i>, double-stranded RNA made in neurons can silence matching genes in a variety of cell types through the transport of RNA between cells. The head region of three worms that were genetically modified to express a fluorescent protein were imaged and the images were color-coded based on depth. The worm on the left lacks neuronal double-stranded RNA and thus every cell is fluorescent. In the middle worm, the expression of the fluorescent protein is silenced by neuronal double-stranded RNA and thus most cells are not fluorescent. The worm on the right lacks an enzyme that amplifies RNA for silencing. Surprisingly, the identities of the cells that depend on this enzyme for gene silencing are unpredictable. As a result, worms of identical genotype are nevertheless random mosaics for how the function of gene silencing is carried out. For more, see <a href=" https://academic.oup.com/nar/article/47/19/10059/5563947">journal article</a> and <a href=" https://umdrightnow.umd.edu/news/umd-scientists-discover-hidden-differences-may-help-cells-evade-drug-therapy">press release.</a> Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6532">6532</a>. | | Snusha Ravikumar, Ph.D., University of Maryland, College Park, and Antony M. Jose, Ph.D., University of Maryland, College Park | 2,133 | 917,059 | 2,133 | Here is the caption from the news release: This image of three worms illustrates functional mosaicism in action. The worms have been genetically modified to express a fluorescent protein that appears as colorful glowing dots. The worm on the left shows fluorescence in every cell. In the middle worm, intestinal cells do not fluoresce because a protein that blocks the fluorescent gene has caused RNA interference (RNAi). In the worm on the right, scientists have removed the enzyme previously believed to be responsible for RNAi in intestinal cells, but fluorescence remains blocked in some of those cells, suggesting that RNAi is being carried out by another enzyme. | | | | 512 | 156,095 | 512 | | 1,067 | 365,553 | 1,067 | Cells, Genes | | | | Snusha Ravikumar, Ph.D., University of Maryland, College Park, and Antony M. Jose, Ph.D., University of Maryland, College Park | | | Kupffer cell residing in the liver | Active | Photograph | | | | Thomas Deerinck, National Center for Microscopy and Imaging Research, University of California, San Diego. | 1,492 | 2,266,453 | 2,000 | | | macrophage immune cell | | 358 | 257,062 | 480 | | 746 | 896,951 | 1,000 | Cells | | | | Thomas Deerinck, National Center for Microscopy and Imaging Research, University of California, San Diego. | | | Sepsis Infographic | Active | Illustration | | | | National Institute of General Medical Sciences | | 4,588,072 | | | | Sepsis | | 2,535 | 344,473 | 1,700 | | | 4,588,072 | | Injury and Illness | | | | National Institute of General Medical Sciences | | | Pathways: The Fascinating Cells of Research Organisms | Active | Video | | | | National Institute of General Medical Sciences | | 16,379,462 | | | | | | | | | | | | | Cells | https://youtu.be/ibSbNUhCNIo | | | National Institute of General Medical Sciences | | | Pathways: What is Basic Science? | Active | Video | | | | National Institute of General Medical Sciences | | 18,264,231 | | | | | | | | | | | | | Cells | https://youtu.be/9Fg2uXLxtII | | | National Institute of General Medical Sciences | | | Pathways: What is It? | Why Scientists Study Cells | Active | Video | | | | National Institute of General Medical Sciences | | 20,353,696 | | | | | | | | | | | | | Cells | https://youtu.be/GlFeLIJyPE8 | | | National Institute of General Medical Sciences | | | Pathways: What's the Connection? | Different Jobs in a Science Lab | Active | Video | | | | National Institute of General Medical Sciences | | 109,665,625 | | | | | | | | | | | | | Being a Scientist | https://youtu.be/6Zwx-73hwug | | | National Institute of General Medical Sciences | | | Cell Nucleus and Lipid Droplets | Active | Photograph | | A cell nucleus (blue) surrounded by lipid droplets (yellow). Exogenously expressed, S-tagged UBXD8 (green) recruits endogenous p97/VCP (red) to the surface of lipid droplets in oleate-treated HeLa cells. Nucleus stained with DAPI. | | James Olzmann, University of California, Berkeley | 2,000 | 1,366,599 | 1,865 | | | organelle lipids | | 400 | 214,397 | 373 | | 800 | 454,373 | 746 | Cells, Molecular Structures | | | BioBeat | James Olzmann, University of California, Berkeley | | | Partial Model of a Cilium’s Doublet Microtubule | Active | Illustration | | Cilia (cilium in singular) are complex molecular machines found on many of our cells. One component of cilia is the doublet microtubule, a major part of cilia’s skeletons that give them support and shape. This animated image is a partial model of a doublet microtubule’s structure based on cryo-electron microscopy images. Video can be found here <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6549"> 6549. </a> | | Brown Lab, Harvard Medical School / © Falconieri Visuals | 1,125 | 405,083 | 2,000 | | | cryo-EM cytoskeleton organelle | | 225 | 56,558 | 400 | | 450 | 117,955 | 800 | Molecular Structures | | | BioBeat | Brown Lab, Harvard Medical School and Veronica Falconieri Hays. | | | The Structure of Cilia’s Doublet Microtubules | Active | Video | | Cilia (cilium in singular) are complex molecular machines found on many of our cells. One component of cilia is the doublet microtubule, a major part of cilia’s skeletons that give them support and shape. This animated video illustrates the structure of doublet microtubules, which contain 451 protein chains that were mapped using cryo-electron microscopy. Image can be found here <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6548"> 6548. </a> | | Brown Lab, Harvard Medical School / © Falconieri Visuals | | 98,096,903 | | | | cryo-EM cytoskeleton organelle | | | | | | | | | Molecular Structures | | | BioBeat | Brown Lab, Harvard Medical School and Veronica Falconieri Hays | | | Time-lapse video of floral pattern in a mixture of two bacterial species, Acinetobacter baylyi and Escherichia coli, grown on a semi-solid agar for 24 hours | Active | Video | | | | Liyang Xiong and Lev Tsimring, BioCircuits Institute, UCSD | | 33,622,646 | | | | | | | | | | | | | Cells | | | | L. Xiong et al, eLife 2020;9: e48885 | | | ¿Qué es la sepsis? (Sepsis Infographic) | Active | Illustration | | La sepsis o septicemia es la respuesta fulminante y extrema del cuerpo a una infección. En los Estados Unidos, más de 1.7 millones de personas contraen sepsis cada año. Sin un tratamiento rápido, la sepsis puede provocar daño de los tejidos, insuficiencia orgánica y muerte. El NIGMS apoya a muchos investigadores en su trabajo para mejorar el diagnóstico y el tratamiento de la sepsis. <Br><Br>Vea <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6536">6536</a> para la versión en inglés de esta infografía. | | Instituto Nacional de Ciencias Médicas Generales | | 2,304,514 | | | | | | | | | | | | | Injury and Illness | | | | Instituto Nacional de Ciencias Médicas Generales | | | Floral pattern in a mixture of two bacterial species, Acinetobacter baylyi and Escherichia coli, grown on a semi-solid agar for 48 hours (photo 1) | Active | Photograph | | | | Liyang Xiong and Lev Tsimring, BioCircuits Institute, UCSD | 2,000 | 1,279,681 | 2,000 | | | | | 400 | 110,209 | 400 | | 800 | 336,991 | 800 | Cells | | | | L. Xiong et al, eLife 2020;9: e48885 | | | Floral pattern in a mixture of two bacterial species, Acinetobacter baylyi and Escherichia coli, grown on a semi-solid agar for 48 hours (photo 2) | Active | Photograph | | | | Liyang Xiong and Lev Tsimring, BioCircuits Institute, UCSD | 2,000 | 1,170,634 | 2,000 | | | | | 400 | 136,062 | 400 | | 800 | 340,694 | 800 | Cells | | | | L. Xiong et al, eLife 2020;9: e48885 | | | Floral pattern in a mixture of two bacterial species, Acinetobacter baylyi and Escherichia coli, grown on a semi-solid agar for 72 hour | Active | Photograph | | | | Liyang Xiong and Lev Tsimring, BioCircuits Institute, UCSD | 2,000 | 1,843,808 | 1,942 | | | | | 400 | 219,175 | 388 | | 800 | 525,650 | 777 | Cells | | | | L. Xiong et al, eLife 2020;9: e48885 | | | Floral pattern in a mixture of two bacterial species, Acinetobacter baylyi and Escherichia coli, grown on a semi-solid agar for 24 hours | Active | Photograph | | | | Liyang Xiong and Lev Tsimring, BioCircuits Institute, UCSD | 2,000 | 2,926,149 | 2,000 | | | | | 400 | 167,606 | 400 | | 800 | 528,928 | 800 | Cells | | | | L. Xiong et al, eLife 2020;9: e48885 | | | Correlative imaging by annotation with single molecules (CIASM) process | Active | Illustration | | These images illustrate a technique combining cryo-electron tomography and super-resolution fluorescence microscopy called correlative imaging by annotation with single molecules (CIASM). CIASM enables researchers to identify small structures and individual molecules in cells that they couldn’t using older techniques. | | Peter D. Dahlberg, W. E. Moerner Laboratory, Stanford University and Wah Chiu Laboratory, SLAC. (Peter D. Dahlberg et al., Proceedings of the National Academy of Sciences, 8 June 2020. 10.1073/pnas.2001849117). | 559 | 527,347 | 2,100 | | | cryo-ET | | 134 | 63,609 | 504 | | 280 | 188,359 | 1,050 | Tools and Techniques | | | | Peter Dahlberg, Stanford University. | | | Cryo-electron tomography of a Caulobacter bacterium | Active | Video | | 3D image of <i>Caulobacter</i> bacterium with various components highlighted: cell membranes (red and blue), protein shell (green), protein factories known as ribosomes (yellow), and storage granules (orange). | | Peter D. Dahlberg, W. E. Moerner Laboratory, Stanford University and Wah Chiu Laboratory, SLAC. (Peter D. Dahlberg et al., Proceedings of the National Academy of Sciences, 8 June 2020. 10.1073/pnas.2001849117). | | 10,843,170 | | | | cryo-ET bacteria | | | | | | | | | Cells, Molecular Structures, Tools and Techniques | | | | Peter Dahlberg, Stanford University. | | | Stress Response in Cells | Active | Video | | Two highly stressed osteosarcoma cells are shown with a set of green droplet-like structures followed by a second set of magenta droplets. These droplets are composed of fluorescently labeled stress-response proteins, either G3BP or UBQLN2 (Ubiquilin-2). Each protein is undergoing a fascinating process, called phase separation, in which a non-membrane bound compartment of the cytoplasm emerges with a distinct environment from the surrounding cytoplasm. Subsequently, the proteins fuse with like proteins to form larger droplets, in much the same way that raindrops merge on a car’s windshield. | | Julia F. Riley, Heidi Hehnly, Sandra Hewett, and Carlos A. Castañeda, Syracuse University. | | 872,224 | | | | | | | | | | | | | Cells | | | | Julia F. Riley and Carlos A. Castañeda, Syracuse University | | | Actin filaments bundled around the dynamin helical polymer | Active | Illustration | | Multiple actin filaments (magenta) are organized around a dynamin helical polymer (rainbow colored) in this model derived from cryo-electron tomography. By bundling actin, dynamin increases the strength of a cell’s skeleton and plays a role in cell-cell fusion, a process involved in conception, development, and regeneration. | | Jenny E. Hinshaw and John R. Jimah, Laboratory of Cell and Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases. | 2,000 | 1,873,641 | 2,000 | | | cryo-ET cytoskeleton protein | | 480 | 134,492 | 480 | | 1,000 | 518,032 | 1,000 | Cells, Molecular Structures | | | | Elizabeth Chen, University of Texas Southwestern Medical Center. | | | Nuclear Lamina | Active | Photograph | | The 3D single-molecule super-resolution reconstruction of the entire nuclear lamina in a HeLa cell was acquired using the TILT3D platform. TILT3D combines a tilted light sheet with point-spread function (PSF) engineering to provide a flexible imaging platform for 3D single-molecule super-resolution imaging in mammalian cells. <br> See <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6573">6573</a> for 3 seperate views of this structure.<br> | | Anna-Karin Gustavsson (Department of Chemistry, Stanford University and Department of Biosciences and Nutrition, Karolinska Institutet), Petar N. Petrov (Department of Chemistry, Stanford University), Maurice Y. Lee (Department of Chemistry and Biophysics Program, Stanford University), Yoav Shechtman (Biomedical Engineering Department, Technion, Israel, Institute of Technology), and W. E. Moerner (Department of Chemistry and Biophysics Program, Stanford University). | 1,469 | 1,833,310 | 2,000 | | | nucleus | | 367 | 22,965 | 499 | | 734 | 119,112 | 999 | Cells, Molecular Structures, Tools and Techniques | | | | Anna-Karin Gustavsson, Ph.D. | | | Nuclear Lamina – Three Views | Active | Photograph | | | | Anna-Karin Gustavsson (Department of Chemistry, Stanford University and Department of Biosciences and Nutrition, Karolinska Institutet), Petar N. Petrov (Department of Chemistry, Stanford University), Maurice Y. Lee (Department of Chemistry and Biophysics Program, Stanford University), Yoav Shechtman (Department of Chemistry, Stanford University. Present address: Biomedical Engineering Department, Technion - Israel Institute of Technology), and W. E. Moerner (Department of Chemistry and Biophysics Program, Stanford University). | 448 | 701,560 | 2,000 | | | nucleus | | 112 | 6,777 | 500 | | 224 | 35,973 | 1,000 | Cells, Molecular Structures, Tools and Techniques | | | | Anna-Karin Gustavsson, Ph.D. | | | Transient receptor potential channel TRPV5 | Active | Illustration | | A 3D reconstruction of a transient receptor potential channel called TRPV5 that was created based on cryo-electron microscopy images. TRPV5 is primarily found in kidney cells and is essential for reabsorbing calcium into the blood. | | Vera Moiseenkova-Bell, University of Pennsylvania. | 1,046 | 807,345 | 1,200 | If TRPV5 malfunctions, the amount of calcium in urine greatly increases, possibly leading to kidney stones. Dr. Moiseenkova-Bell’s research in this area has provided molecular details of how TRPV5 is modulated and identified a molecule that can inhibit the channel. Currently, her laboratory is using cryo-EM to determine TRPV5 channel structures in conditions that better mimic those found in the body, including the presence of regulatory proteins. She hopes that a better understanding of how this channel works will inform the search for drugs that effectively treat kidney stones. | | | | 261 | 17,858 | 300 | | 523 | 71,077 | 600 | Molecular Structures | | | | Vera Moiseenkova-Bell, University of Pennsylvania. | | | Bacterial ribosome assembly | Active | Illustration | | 3D reconstructions of two stages in the assembly of the bacterial ribosome created from time-resolved cryo-electron microscopy images. Ribosomes translate genetic instructions into proteins. | | Joachim Frank, Columbia University. | 900 | 364,550 | 1,200 | Here are two reconstructions showing two stages in the assembly of the bacterial ribosome from its two subunits (the small and the large subunit). The left image shows the small subunit bound to the tRNA (orange/green) that carries the first building block of the protein to be made. It is also bound to the genetic message and two factors called IF1 (red) and IF2 (purple/carmine), which are important helpers in the assembly. In less than one fiftieth second after adding the large subunit (not shown here), the factor IF1 has left (image on the right), giving the go-ahead for the next step of assembly in which IF2 leaves as well. In the end the fully assembled ribosome is ready to translate the genetic message into protein. | | | | 225 | 8,234 | 300 | | 450 | 29,322 | 600 | Molecular Structures | | | | Joachim Frank, Columbia University. | | | Full-length serotonin receptor (ion channel) | Active | Illustration | | A 3D reconstruction, created using cryo-electron microscopy, of an ion channel known as the full-length serotonin receptor in complex with the antinausea drug granisetron (orange). Ion channels are proteins in cell membranes that help regulate many processes. | | Sudha Chakrapani, Case Western Reserve University School of Medicine. | 1,200 | 668,847 | 686 | Ion channels help regulate many processes such as motor function and pain transmission, and medications often target them. Sudha Chakrapani’s lab identified a structure of an ion channel, known as the full-length serotonin receptor, that binds to a group of drugs that can manage nausea caused by cancer therapies. Understanding how these medications interact with the full-length serotonin receptor could help researchers further improve their designs. | | | | 300 | 11,738 | 171 | | 600 | 52,286 | 343 | Molecular Structures | | | | Sudha Chakrapani, Case Western Reserve University School of Medicine. | | | Bacterial nanowire model | Active | Illustration | | A model of a <i>Geobacter sulfurreducens</i> nanowire created from cryo-electron microscopy images. The bacterium conducts electricity through these nanowires, which are made up of protein and iron-containing molecules. | | Edward Egelman, University of Virginia. | 812 | 132,256 | 1,024 | | | | | 203 | 6,728 | 256 | | 406 | 34,648 | 512 | Molecular Structures | | | | Edward Egelman, University of Virginia. | | | Fluorescent C. elegans showing muscle and ribosomal protein | Active | Photograph | | | | Hannah Somers, Mount Desert Island Biological Laboratory. | 2,048 | 103,994 | 2,048 | | | | | 512 | 7,110 | 512 | | 1,024 | 27,814 | 1,024 | Molecular Structures | | | | Jarod Rollins, Mount Desert Island Biological Laboratory. | | | Group of fluorescent C. elegans showing muscle and ribosomal protein | Active | Photograph | | | | Hannah Somers, Mount Desert Island Biological Laboratory. | 2,048 | 180,885 | 2,048 | | | | | 512 | 11,655 | 512 | | 1,024 | 49,575 | 1,024 | Molecular Structures | | | | Jarod Rollins, Mount Desert Island Biological Laboratory. | | | Closeup of fluorescent C. elegans showing muscle and ribosomal protein | Active | Photograph | | | | Hannah Somers, Mount Desert Island Biological Laboratory. | 2,048 | 326,659 | 2,048 | | | | | 512 | 18,828 | 512 | | 1,024 | 85,553 | 1,024 | Molecular Structures | | | | Jarod Rollins, Mount Desert Island Biological Laboratory. | | | Cell-like compartments from frog eggs | Active | Photograph | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | 2,048 | 1,250,044 | 2,048 | | | structure | | 512 | 29,062 | 512 | | 1,024 | 147,943 | 1,024 | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments from frog eggs 2 | Active | Photograph | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | 2,048 | 1,169,088 | 2,048 | | | structure | | 512 | 25,168 | 512 | | 1,024 | 130,399 | 1,024 | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments from frog eggs 3 | Active | Photograph | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | 2,048 | 1,167,197 | 2,048 | | | structure | | 512 | 27,715 | 512 | | 1,024 | 137,178 | 1,024 | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments emerging from scrambled frog eggs | Active | Video | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | | 8,350,762 | | The cell-like compartments can divide repeatedly to produce more compartments like cells in an embryo. Frog sperm nuclei were added to these egg extracts to provide a source of nuclei, but they are not required for compartment formation. Shown in blue are the nuclei, visualized by the fluorescent protein mCherry-NLS. Shown in red is the endoplasmic reticulum, stained by the ER-Tracker dye. Shown in green are the microtubules, visualized by HiLyte Fluor 647-labeled tubulin protein. This epifluorescence time lapse video was acquired with a 5x objective on a Leica DMi8 inverted microscope over the course of 119 minutes. Each frame captures a 2.64 mm by 2.64 mm square region. News coverage: Stanford Medicine press release, Quanta Magazine, Stanford Scope Blog | | structure | | | | | | | | | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments emerging from scrambled frog eggs 2 | Active | Video | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | | 8,395,887 | | | | structure | | | | | | | | | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments emerging from scrambled frog eggs 3 | Active | Video | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | | 8,164,998 | | | | structure | | | | | | | | | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments emerging from scrambled frog eggs 4 | Active | Video | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | | 3,928,596 | | | | structure | | | | | | | | | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments from frog eggs 4 | Active | Photograph | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | 1,203 | 428,400 | 1,890 | | | structure | | 300 | 14,266 | 472 | | 601 | 68,492 | 945 | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments from frog eggs 5 | Active | Photograph | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | 1,203 | 425,224 | 1,890 | | | structure | | 300 | 13,799 | 472 | | 601 | 66,889 | 945 | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Cell-like compartments from frog eggs 6 | Active | Photograph | | | | Xianrui Cheng, Stanford University School of Medicine. Xianrui Cheng, James E. Ferrell Jr. SCIENCE 366: 631, 01 Nov 2019 (DOI: 10.1126/science.aav7793) | 1,203 | 414,760 | 1,890 | | | structure | | 300 | 13,125 | 472 | | 601 | 63,468 | 945 | Cells, Tools and Techniques | | | | Xianrui Cheng, Stanford University School of Medicine. | | | Pathways – Bacteria vs. Viruses: What's the Difference? | Active | Video | | | | National Institute of General Medical Sciences | | 15,755,478 | | | | | | | | | | | | | Cells | hTWUV6azGXE | 12/3/2020 | | National Institute of General Medical Sciences | | | Simulation of leg muscles moving | Active | Video | | When we walk, muscles and nerves interact in intricate ways. This simulation, which is based on data from a six-foot-tall man, shows these interactions. | | Chand John and Eran Guendelman, Stanford University | | 2,615,113 | | | | | | | | | | | 2,615,113 | | Cells | | 12/10/2020 | | Chand John and Eran Guendelman, Stanford University | | | Atomic-level structure of the HIV capsid | Active | Video | | This animation shows atoms of the HIV capsid, the shell that encloses the virus's genetic material. Scientists determined the exact structure of the capsid using a variety of imaging techniques and analyses. They then entered this data into a supercomputer to produce this image. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=3477">3477</a>. | | Juan R. Perilla and the Theoretical and Computational Biophysics Group, University of Illinois at Urbana-Champaign | | 20,713,823 | | | | | | | | | | | 20,713,823 | | Cells, Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | | | Juan R. Perilla and the Theoretical and Computational Biophysics Group, University of Illinois at Urbana-Champaign | | | See how immune cell acid destroys bacterial proteins | Active | Video | | This animation shows the effect of exposure to hypochlorous acid, which is found in certain types of immune cells, on bacterial proteins. The proteins unfold and stick to one another, leading to cell death. | | American Chemistry Council | | 749,660 | | | | | | | | | | | 749,660 | | Cells, Chemistry, Biochemistry, and Pharmacology | | | | American Chemistry Council | | | Protein formation | Inactive | Illustration | | Proteins are 3D structures made up of smaller units. DNA is transcribed to RNA, which in turn is translated into amino acids. Amino acids form a protein strand, which has sections of corkscrew-like coils, called alpha helices, and other sections that fold flat, called beta sheets. The protein then goes through complex folding to produce the 3D structure. | | NIGMS, with the folded protein illustration adapted from Jane Richardson, Duke University Medical Center | 1,164 | 917,872 | 2,400 | | | alpha helix, primary structure, secondary structure, tertiary structure | | 291 | 22,849 | 600 | | 582 | 87,924 | 1,200 | Chemistry, Biochemistry, and Pharmacology, Genes, Molecular Structures | | 1/25/2021 | | NIGMS, with the folded protein illustration adapted from Jane Richardson, Duke University Medical Center | | | Enzyme reaction | Active | Illustration | | Enzymes speed up chemical reactions by reducing the amount of energy needed for the reactions. The substrate (lactose) binds to the active site of the enzyme (lactase) and is converted into products (sugars). | | NIGMS | 1,685 | 579,679 | 1,684 | | | enzyme-substrate complex | | 421 | 16,848 | 420 | | 842 | 61,156 | 841 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | 1/25/2021 | | NIGMS | | | Soft X-ray tomography of a pancreatic beta cell | Active | Illustration | | A color-coded, 3D model of a rat pancreatic β cell. This type of cell produces insulin, a hormone that helps regulate blood sugar. Visible are mitochondria (pink), insulin vesicles (yellow), the nucleus (dark blue), and the plasma membrane (teal). This model was created based on soft X-ray tomography (SXT) images. | | Kate White, University of Southern California; and Valentina Loconte, University of California San Francisco and National Center for X-ray Tomography. Data collected at the National Center for X-ray Tomography. | 2,027 | 602,108 | 1,280 | | | pancreas, diabetes | | 506 | 32,496 | 320 | | 1,013 | 142,627 | 640 | Cells, Tools and Techniques | | 2/2/2021 | | Carolyn Larabell, University of California, San Francisco. | | | Cryo-ET cross-section of the Golgi apparatus | Active | Photograph | | On the left, a cross-section slice of a rat pancreas cell captured using cryo-electron tomography (cryo-ET). On the right, a 3D, color-coded version of the image highlighting cell structures. Visible features include the folded sacs of the Golgi apparatus (copper), transport vesicles (medium-sized dark-blue circles), microtubules (neon green), ribosomes (small pale-yellow circles), and lysosomes (large yellowish-green circles). Black line (bottom right of the left image) represents 200 nm. This image is a still from video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6609">6609</a>. | | Xianjun Zhang, University of Southern California, and the Jensen Lab, California Institute of Technology. | 1,364 | 1,331,921 | 2,599 | | | Organelles, Golgi body | | 341 | 50,423 | 649 | | 682 | 255,069 | 1,299 | Cells, Tools and Techniques | | 2/2/2021 | | Xianjun Zhang, University of Southern California. | | | Cryo-ET cell cross-section visualizing insulin vesicles | Active | Photograph | | On the left, a cross-section slice of a rat pancreas cell captured using cryo-electron tomography (cryo-ET). On the right, a color-coded, 3D version of the image highlighting cell structures. Visible features include insulin vesicles (purple rings), insulin crystals (gray circles), microtubules (green rods), ribosomes (small yellow circles). The black line at the bottom right of the left image represents 200 nm. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6608">6608</a>. | | Xianjun Zhang, University of Southern California, and the Jensen Lab, California Institute of Technology. | 1,650 | 2,144,131 | 4,006 | | | Organelles | | 412 | 94,529 | 1,000 | | 825 | 436,324 | 2,003 | Cells, Tools and Techniques | | 2/2/2021 | | Xianjun Zhang, University of Southern California. | | | Cryo-ET cross-section of a rat pancreas cell | Active | Photograph | | On the left, a cross-section slice of a rat pancreas cell captured using cryo-electron tomography (cryo-ET). On the right, a 3D, color-coded version of the image highlighting cell structures. Visible features include microtubules (neon-green rods), ribosomes (small yellow circles), and vesicles (dark-blue circles). These features are surrounded by the partially visible endoplasmic reticulum (light blue). The black line at the bottom right of the left image represents 200 nm. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6607">6607</a>. | | Xianjun Zhang, University of Southern California, and the Jensen Lab, California Institute of Technology. | 1,674 | 2,099,551 | 4,006 | | | Organelles | | 418 | 95,575 | 1,000 | | 837 | 434,839 | 2,003 | Cells, Tools and Techniques | | 2/2/2021 | | Xianjun Zhang, University of Southern California. | | | 3D reconstruction of the Golgi apparatus in a pancreas cell | Active | Video | | Researchers used cryo-electron tomography (cryo-ET) to capture images of a rat pancreas cell that were then compiled and color-coded to produce a 3D reconstruction. Visible features include the folded sacs of the Golgi apparatus (copper), transport vesicles (medium-sized dark-blue circles), microtubules (neon-green rods), a mitochondria membrane (pink), ribosomes (small pale-yellow circles), endoplasmic reticulum (aqua), and lysosomes (large yellowish-green circles). See <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6606">6606</a> for a still image from the video. | | Xianjun Zhang, University of Southern California, and the Jensen Lab, California Institute of Technology. | | 49,637,384 | | | | Organelles, Golgi body | | | | | | | | | Cells, Tools and Techniques | | 2/2/2021 | | Xianjun Zhang, University of Southern California. | | | Average teen circadian cycle | Active | Illustration | | | | NIGMS | 4,342 | 1,217,366 | 4,567 | This image has a companion image as well as a Spanish version. | | internal clock, body temperature, energy | | 1,085 | 103,236 | 1,142 | | 2,171 | 350,280 | 2,283 | Chemistry, Biochemistry, and Pharmacology, Genes | | 2/12/2021 | | NIGMS | | | Ciclo circadiano de un adolescente típico | Active | Illustration | | Los ritmos circadianos son cambios físicos, mentales y conductuales que siguen un ciclo de 24 horas. Los ritmos circadianos típicos conducen a un nivel alto de energía durante la mitad del día (de 10 a.m. a 1 p.m.) y un bajón por la tarde. De noche, los ritmos circadianos hacen que la hormona melatonina aumente, lo que hace que la persona se sienta somnolienta. <Br><Br> Vea <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6611">6611</a> para la versión en inglés de esta infografía. | | NIGMS | 4,342 | 2,418,937 | 4,567 | Esta imagen tiene una imagen complementaria y una versión en inglés. (This image has a companion image as well as an English version.) | | reloj interno, temperatura corporal, energía | | 1,085 | 123,094 | 1,142 | | 2,171 | 423,006 | 2,283 | Chemistry, Biochemistry, and Pharmacology, Genes | | 2/12/2021 | | NIGMS | | | Circadian rhythms and the SCN | Active | Illustration | | | | NIGMS | 625 | 383,905 | 1,160 | This image has a companion image as well as a Spanish version. | | hypothalamus | | 156 | 7,020 | 289 | | 312 | 27,719 | 579 | Chemistry, Biochemistry, and Pharmacology, Genes | | 2/12/2021 | | NIGMS | | | Los ritmos circadianos y el núcleo supraquiasmático | Active | Illustration | | Los ritmos circadianos son cambios físicos, mentales y de comportamiento que siguen un ciclo de 24 horas. Los ritmos circadianos se ven influenciados por la luz y están regulados por el núcleo supraquiasmático del cerebro, a veces denominado el reloj principal. <Br><Br> Vea <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6613">6613</a> para la versión en inglés de esta infografía. | | NIGMS | 626 | 419,015 | 1,160 | Esta imagen tiene una imagen complementaria y una versión en inglés. (This image has a companion image as well as an English version.) | | hipotálamo | | 156 | 6,916 | 289 | | 313 | 27,393 | 580 | Chemistry, Biochemistry, and Pharmacology, Genes | | 2/12/2021 | | NIGMS | | | RNA folding in action | Active | Video | | An RNA molecule dynamically refolds itself as it is being synthesized. When the RNA is short, it ties itself into a “knot” (dark purple). For this domain to slip its knot, about 5 seconds into the video, another newly forming region (fuchsia) wiggles down to gain a “toehold.” About 9 seconds in, the temporarily knotted domain untangles and unwinds. Finally, at about 23 seconds, the strand starts to be reconfigured into the shape it needs to do its job in the cell. | | Angela M. Yu, Weill Cornell Medicine and Northwestern University; Paul M. Gasper, University at Albany; Luyi Cheng, Northwestern University; Lien B. Lai, The Ohio State University; Simi Kaur, University at Albany; Venkat Gopalan, The Ohio State University; Alan A. Chen, University at Albany; and Julius B. Lucks, Northwestern University | | 57,543,045 | | Related to the Molecular Cell paper “Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates”: https://doi.org/10.1016/j.molcel.2020.12.017 Appeared on the NIH Director’s Blog: https://directorsblog.nih.gov/2021/02/25/using-r2d2-to-understand-rna-folding/ Permission Email: From: Julius Beau Lucks < jblucks@northwestern.edu> Sent on: Monday, March 1, 2021 3:28:44 PM To: Abbey Bigler < abigler@iqsolutions.com> CC: Chen, Alan < achen6@albany.edu>; Amanda B Morris < amandamo@northwestern.edu> Subject: Re: Request on Behalf of NIGMS Attachments: Yu_Gasper_R2D2_Molecular_Cell_2021.pdf (5.37 MB) Dear Abbey, Thank you for your email. We would be delighted for you to share the video! The video was published as part of the attached manuscript but I believe we own the relevant copyright so it is fine to us. Video credit goes to the authors listed on the attached PDF. For the mp4 file I’m cc’ing Professor Alan Chen who can help with that. For the caption: Title: RNA folding in action. Description: This video depicts an RNA molecule dynamically refolding itself as it is being synthesized. Domains are colored for visualization. When the RNA is short it ties itself into a ‘knot’ (dark purple). For this knotted domain to ’slip’ its knot, about XXX seconds into the video, another newly forming region (fuchsia) wiggles down to gain a “toehold.” About XXX seconds in, the temporarily knotted domain untangles and unwinds, and, finally, at about XXX seconds, the strand starts to get reconfigured into the shape it needs to do its job in the cell. (I left XXXs for the timestamps depending on the video - we can edit once you get the video). Thank you again! Julius Julius B. Lucks Associate Professor And Associate Chair of Chemical and Biological Engineering Center for Synthetic Biology, Center for Water Research Chemistry of Life Processes Institute Northwestern University http://luckslab.org @LucksLab | | Ribonucleic acid, 3D folding, R2D2, Reconstructing RNA Dynamics from Data | | | | | | | | | Molecular Structures | | | | Julius Lucks, Northwestern University | | | Zebrafish embryo showing vasculature | Active | Photograph | | A zebrafish embryo. The blue areas are cell bodies, the green lines are blood vessels, and the red glow is blood. This image was created by stitching together five individual images captured with a hyperspectral multipoint confocal fluorescence microscope that was developed at the Eliceiri Lab. | | Andreas Velten, Eliceiri Lab, University of Wisconsin-Madison. | 2,400 | 5,744,719 | 5,200 | Permission email: From: KEVIN W ELICEIRI < eliceiri@wisc.edu> Sent on: Thursday, March 4, 2021 4:04:21 PM To: Abbey Bigler < abigler@iqsolutions.com>; Sammak, Paul (NIH/NIGMS) [E] < paul.sammak@nih.gov> Subject: Re: Request on Behalf of NIGMS Dear Abbey, Both look great. You are welcome to use for this and I can confirm both are free of copyright restrictions. all the best k Kevin W. Eliceiri, Ph.D. RRF Walter H. Helmerich Professor Medical Physics and Biomedical Engineering Investigator, CQCI, LOCI, UW-Madison Investigator, Morgridge Institute for Research | | | | 600 | 44,921 | 1,300 | | 1,200 | 193,645 | 2,600 | Cells, Tools and Techniques | | 3/15/2021 | | Kevin Eliceiri, University of Wisconsin-Madison. | | | Human retinal organoid | Active | Photograph | | A replica of a human retina grown from stem cells. It shows rod photoreceptors (nerve cells responsible for dark vision) in green and red/green cones (nerve cells responsible for red and green color vision) in red. The cell nuclei are stained blue. This image was captured using a confocal microscope. | | Elizabeth E. Capowski, Gamm Lab, University of Wisconsin-Madison. | 2,000 | 826,887 | 2,000 | Permission email: From: KEVIN W ELICEIRI < eliceiri@wisc.edu> Sent on: Thursday, March 4, 2021 4:04:21 PM To: Abbey Bigler < abigler@iqsolutions.com>; Sammak, Paul (NIH/NIGMS) [E] < paul.sammak@nih.gov> Subject: Re: Request on Behalf of NIGMS Dear Abbey, Both look great. You are welcome to use for this and I can confirm both are free of copyright restrictions. all the best k Kevin W. Eliceiri, Ph.D. RRF Walter H. Helmerich Professor Medical Physics and Biomedical Engineering Investigator, CQCI, LOCI, UW-Madison Investigator, Morgridge Institute for Research | | Eye, neurons | | 500 | 67,782 | 500 | | 1,000 | 283,131 | 1,000 | Cells, Tools and Techniques | | | | Kevin Eliceiri, University of Wisconsin-Madison. | | | C. elegans with blue and yellow lights in the background | Active | Photograph | | These microscopic roundworms, called <i>Caenorhabditis elegans</i>, lack eyes and the opsin proteins used by visual systems to detect colors. However, researchers found that the worms can still sense the color of light in a way that enables them to avoid pigmented toxins made by bacteria. This image was captured using a stereo microscope. | | Eugene L. Q. Lee, Massachusetts Institute of Technology. | 1,430 | 233,586 | 1,349 | Related to work reported in the Science paper “C. elegans discriminates colors to guide foraging.” DOI: 10.1126/science.abd3010 MIT press release: https://news.mit.edu/2021/eyeless-roundworms-sense-color-0304 Permission email: From: Dipon Ghosh < dipon@mit.edu> Sent: Monday, March 15, 2021 1:10 PM To: Abbey Bigler < abigler@iqsolutions.com> Cc: Bob Horvitz < horvitz@mit.edu> Subject: Re: Request on Behalf of NIGMS Dear Abbey, We'd be happy to share these pictures with you to feature in the NIGMS Image and Video Gallery. I've attached three pictures that we'd shared with the media to accompany press releases about our recent paper to this email. Here's the additional information you requested: We permit inclusion of these pictures in the NIGMS Image and Video Gallery and can confirm that the material is free of copyright restrictions. Credit for these images goes to Eugene L. Q. Lee. These pictures can be accompanied by the following title/caption: Despite lacking both eyes and the opsin proteins used by visual systems to detect colors, the microscopic roundworm Caenorhabditis elegans can sense the color of light in its environment while foraging on colorful bacteria. And here's a brief description of our work: Color detection is used by animals to navigate colorful natural environments and is thought to require proteins known as opsins that are central to how visual systems sense light. Our study reports our surprising discovery that despite lacking eyes or opsins, a microscopic roundworm called Caenorhabditis elegans can sense the color of light in its environment to guide it away from pigmented toxins made by harmful colorful bacteria. In general, our work tells us that we have much to learn and explore about how animals can sense light. Perhaps by better understanding color sensitivity in the worm, given that the genes involved appear to be evolutionarily conserved, we might find similar patterns and activities in other organisms and therefore learn new, unexpected ways in which animals, including humans, sense, respond to, and interact with the light that is so ubiquitous in our environment. Please let me know if you have any questions or need any other information. Best, Dipon | | | | 357 | 10,731 | 337 | | 714 | 42,827 | 674 | Cells, Tools and Techniques | | | | H. Robert Horvitz and Dipon Ghosh, Massachusetts Institute of Technology. | | | Petri dish containing C. elegans | Active | Photograph | | This Petri dish contains microscopic roundworms called <i>Caenorhabditis elegans</i>. Researchers used these particular worms to study how <i>C. elegans</i> senses the color of light in its environment. | | Eugene L. Q. Lee, Massachusetts Institute of Technology. | 3,203 | 13,193,642 | 4,806 | Related to work reported in the Science paper “C. elegans discriminates colors to guide foraging.” DOI: 10.1126/science.abd3010 MIT press release: https://news.mit.edu/2021/eyeless-roundworms-sense-color-0304 Permission email: From: Dipon Ghosh < dipon@mit.edu> Sent: Monday, March 15, 2021 1:10 PM To: Abbey Bigler < abigler@iqsolutions.com> Cc: Bob Horvitz < horvitz@mit.edu> Subject: Re: Request on Behalf of NIGMS Dear Abbey, We'd be happy to share these pictures with you to feature in the NIGMS Image and Video Gallery. I've attached three pictures that we'd shared with the media to accompany press releases about our recent paper to this email. Here's the additional information you requested: We permit inclusion of these pictures in the NIGMS Image and Video Gallery and can confirm that the material is free of copyright restrictions. Credit for these images goes to Eugene L. Q. Lee. These pictures can be accompanied by the following title/caption: Despite lacking both eyes and the opsin proteins used by visual systems to detect colors, the microscopic roundworm Caenorhabditis elegans can sense the color of light in its environment while foraging on colorful bacteria. And here's a brief description of our work: Color detection is used by animals to navigate colorful natural environments and is thought to require proteins known as opsins that are central to how visual systems sense light. Our study reports our surprising discovery that despite lacking eyes or opsins, a microscopic roundworm called Caenorhabditis elegans can sense the color of light in its environment to guide it away from pigmented toxins made by harmful colorful bacteria. In general, our work tells us that we have much to learn and explore about how animals can sense light. Perhaps by better understanding color sensitivity in the worm, given that the genes involved appear to be evolutionarily conserved, we might find similar patterns and activities in other organisms and therefore learn new, unexpected ways in which animals, including humans, sense, respond to, and interact with the light that is so ubiquitous in our environment. Please let me know if you have any questions or need any other information. Best, Dipon | | | | 801 | 37,294 | 1,201 | | 1,601 | 165,218 | 2,403 | Tools and Techniques | | | | H. Robert Horvitz and Dipon Ghosh, Massachusetts Institute of Technology. | | | Petri dish | Active | Photograph | | The white circle in this image is a Petri dish, named for its inventor, Julius Richard Petri. These dishes are one of the most common pieces of equipment in biology labs, where researchers use them to grow cells. | | Eugene L. Q. Lee, Massachusetts Institute of Technology. | 2,742 | 13,056,601 | 4,113 | Permission email: From: Dipon Ghosh < dipon@mit.edu> Sent: Monday, March 15, 2021 1:10 PM To: Abbey Bigler < abigler@iqsolutions.com> Cc: Bob Horvitz < horvitz@mit.edu> Subject: Re: Request on Behalf of NIGMS Dear Abbey, We'd be happy to share these pictures with you to feature in the NIGMS Image and Video Gallery. I've attached three pictures that we'd shared with the media to accompany press releases about our recent paper to this email. Here's the additional information you requested: We permit inclusion of these pictures in the NIGMS Image and Video Gallery and can confirm that the material is free of copyright restrictions. Credit for these images goes to Eugene L. Q. Lee. These pictures can be accompanied by the following title/caption: Despite lacking both eyes and the opsin proteins used by visual systems to detect colors, the microscopic roundworm Caenorhabditis elegans can sense the color of light in its environment while foraging on colorful bacteria. And here's a brief description of our work: Color detection is used by animals to navigate colorful natural environments and is thought to require proteins known as opsins that are central to how visual systems sense light. Our study reports our surprising discovery that despite lacking eyes or opsins, a microscopic roundworm called Caenorhabditis elegans can sense the color of light in its environment to guide it away from pigmented toxins made by harmful colorful bacteria. In general, our work tells us that we have much to learn and explore about how animals can sense light. Perhaps by better understanding color sensitivity in the worm, given that the genes involved appear to be evolutionarily conserved, we might find similar patterns and activities in other organisms and therefore learn new, unexpected ways in which animals, including humans, sense, respond to, and interact with the light that is so ubiquitous in our environment. Please let me know if you have any questions or need any other information. Best, Dipon | | | | 685 | 43,724 | 1,028 | | 1,370 | 200,933 | 2,056 | Tools and Techniques | | | | H. Robert Horvitz and Dipon Ghosh, Massachusetts Institute of Technology. | | | Fruit fly nurse cells during egg development | Active | Photograph | | In many animals, the egg cell develops alongside sister cells. These sister cells are called nurse cells in the fruit fly (<em>Drosophila melanogaster</em>), and their job is to “nurse” an immature egg cell, or oocyte. Toward the end of oocyte development, the nurse cells transfer all their contents into the oocyte in a process called nurse cell dumping. This process involves significant shape changes on the part of the nurse cells (blue), which are powered by wavelike activity of the protein myosin (red). This image was captured using a confocal laser scanning microscope. Related to video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6754">6754</a>. | | Jasmin Imran Alsous and Jonathan Jackson, Martin Lab, Massachusetts Institute of Technology. | 1,200 | 132,211 | 1,200 | Related to the PNAS paper “Dynamics of hydraulic and contractile wave-mediated fluid transport during Drosophila oogenesis.” https://doi.org/10.1073/pnas.2019749118 MIT press release: https://news.mit.edu/2021/study-reveals-how-egg-cells-get-so-big-0304 Permission email: From: Adam C Martin < acmartin@mit.edu> Sent on: Wednesday, March 17, 2021 12:46:56 AM To: Abbey Bigler < abigler@iqsolutions.com> Subject: FW: NIGMS image and video Attachments: NIGMS Gallery.docx (14.87 KB) Hi Abbey, Thanks for the reminder. Attached is permission, title, and caption for one of the images and a movie from our work funded by NIGMS. The image/movie files are linked below. Let me know if these don’t work for you and I can download and share in a Dropbox folder. Also, let me know if you need more info. Best, Adam Images for the NIGMS image and video gallery For the image and video below: Credit Information: Jasmin Imran Alsous and Jonathan Jackson from Adam C. Martin’s lab (Biology Department, MIT) Permission: We grant permission for inclusion in the NIGMS Image and Video Gallery and confirm that the material is free of copyright restrictions. Image 1 Title: Myosin activity drives dynamic cell deformations during oogenesis Caption: Across many animals, the egg cell develops alongside other sister cells. In the fruit fly, Drosophila melanogaster, these sister cells are called nurse cells, and their job is to ‘nurse’ the developing oocyte. Towards the end of oogenesis, the nurse cells transfer all their contents into the oocyte in a process called ‘nurse cell dumping’ to prepare the oocyte for fertilization; this process involves significant shape deformations on part of the nurse cells (cyan), which are powered by wave-like myosin activity (red). This image shows the cluster of nurse cells amidst transport: Note the unusual cell body shapes and cortical myosin activity! Video 1 Title: Myosin activity drives dynamic cell deformations during oogenesis Caption: Across many animals, the egg cell develops alongside other sister cells. In the fruit fly, Drosophila melanogaster, these sister cells are called nurse cells, and their job is to ‘nurse’ the developing oocyte. Towards the end of oogenesis, the nurse cells transfer all their contents into the oocyte in a process called ‘nurse cell dumping’ to prepare the oocyte for fertilization; this process involves significant shape deformations on part of the nurse cells (cyan), which are powered by wave-like myosin activity (red). This video captures the nurse cells amidst transport: Note the unusual cell body shapes and wave-like myosin activity! | | Oogenesis | | 300 | 7,502 | 300 | | 600 | 38,456 | 600 | Cells, Tools and Techniques | | | | Adam C. Martin, Massachusetts Institute of Technology. | | | Fruit fly nurse cells transporting their contents during egg development | Active | Video | | In many animals, the egg cell develops alongside sister cells. These sister cells are called nurse cells in the fruit fly (<em>Drosophila melanogaster</em>), and their job is to “nurse” an immature egg cell, or oocyte. Toward the end of oocyte development, the nurse cells transfer all their contents into the oocyte in a process called nurse cell dumping. This video captures this transfer, showing significant shape changes on the part of the nurse cells (blue), which are powered by wavelike activity of the protein myosin (red). Researchers created the video using a confocal laser scanning microscope. Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6753">6753</a>. | | Jasmin Imran Alsous and Jonathan Jackson, Martin Lab, Massachusetts Institute of Technology. | | 24,346,940 | | Related to the PNAS paper “Dynamics of hydraulic and contractile wave-mediated fluid transport during Drosophila oogenesis.” https://doi.org/10.1073/pnas.2019749118 MIT press release: https://news.mit.edu/2021/study-reveals-how-egg-cells-get-so-big-0304 Permission email: From: Adam C Martin < acmartin@mit.edu> Sent on: Wednesday, March 17, 2021 12:46:56 AM To: Abbey Bigler < abigler@iqsolutions.com> Subject: FW: NIGMS image and video Attachments: NIGMS Gallery.docx (14.87 KB) Hi Abbey, Thanks for the reminder. Attached is permission, title, and caption for one of the images and a movie from our work funded by NIGMS. The image/movie files are linked below. Let me know if these don’t work for you and I can download and share in a Dropbox folder. Also, let me know if you need more info. Best, Adam Images for the NIGMS image and video gallery For the image and video below: Credit Information: Jasmin Imran Alsous and Jonathan Jackson from Adam C. Martin’s lab (Biology Department, MIT) Permission: We grant permission for inclusion in the NIGMS Image and Video Gallery and confirm that the material is free of copyright restrictions. Image 1 Title: Myosin activity drives dynamic cell deformations during oogenesis Caption: Across many animals, the egg cell develops alongside other sister cells. In the fruit fly, Drosophila melanogaster, these sister cells are called nurse cells, and their job is to ‘nurse’ the developing oocyte. Towards the end of oogenesis, the nurse cells transfer all their contents into the oocyte in a process called ‘nurse cell dumping’ to prepare the oocyte for fertilization; this process involves significant shape deformations on part of the nurse cells (cyan), which are powered by wave-like myosin activity (red). This image shows the cluster of nurse cells amidst transport: Note the unusual cell body shapes and cortical myosin activity! Video 1 Title: Myosin activity drives dynamic cell deformations during oogenesis Caption: Across many animals, the egg cell develops alongside other sister cells. In the fruit fly, Drosophila melanogaster, these sister cells are called nurse cells, and their job is to ‘nurse’ the developing oocyte. Towards the end of oogenesis, the nurse cells transfer all their contents into the oocyte in a process called ‘nurse cell dumping’ to prepare the oocyte for fertilization; this process involves significant shape deformations on part of the nurse cells (cyan), which are powered by wave-like myosin activity (red). This video captures the nurse cells amidst transport: Note the unusual cell body shapes and wave-like myosin activity! | | Oogenesis | | 300 | 7,502 | 300 | | 600 | 38,456 | 600 | Cells, Tools and Techniques | | | | Adam C. Martin, Massachusetts Institute of Technology. | | | Honeybee brain | Active | Photograph | | Insect brains, like the honeybee brain shown here, are very different in shape from human brains. Despite that, bee and human brains have a lot in common, including many of the genes and neurochemicals they rely on in order to function. The bright-green spots in this image indicate the presence of tyrosine hydroxylase, an enzyme that allows the brain to produce dopamine. Dopamine is involved in many important functions, such as the ability to experience pleasure. This image was captured using confocal microscopy. | | Matthew McNeill, Robinson Lab, University of Illinois at Urbana-Champaign. | 5,192 | 2,378,691 | 7,200 | Permission Email: From: Abbey Bigler < abigler@iqsolutions.com> on behalf of Abbey Bigler Sent on: Thursday, April 1, 2021 2:59:39 PM To: Vasi, Nicholas Paul < nvasi@illinois.edu> Subject: RE: Request on Behalf of NIGMS Hi Nick, These are great! Please do send the links to the full-resolution images, and I’ll begin the process of adding them to the NIGMS gallery. Thank you, Abbey From: Vasi, Nicholas Paul < nvasi@illinois.edu> Sent: Thursday, April 1, 2021 10:26 AM To: Abbey Bigler < abigler@iqsolutions.com> Subject: Re: Request on Behalf of NIGMS CAUTION: This email originated from an external sender Hi Abbey, Thanks for your understanding, I appreciate it. I've attached some lower-res images here, please let me know if these are acceptable and I'll provide links to the full-resolution. -Nick From: Abbey Bigler < abigler@iqsolutions.com> Sent: Thursday, April 1, 2021 8:56 AM To: Vasi, Nicholas Paul < nvasi@illinois.edu> Subject: RE: Request on Behalf of NIGMS Hi Nick, Thank you for explaining! I understand your concern. Unfortunately, all the work in our gallery has to fall under the CC license that you mentioned, which allows the works to be edited. I’d greatly appreciate an opportunity to take a look at the unedited images and see if they’d work for the gallery instead. Best, Abbey From: Vasi, Nicholas Paul < nvasi@illinois.edu> Sent: Thursday, April 1, 2021 9:51 AM To: Abbey Bigler < abigler@iqsolutions.com> Subject: Re: Request on Behalf of NIGMS CAUTION: This email originated from an external sender Hi Abbey, I'd be happy to work with you, and can provide whatever you need. I did want to discuss one point from your email below: Other people may use items from the gallery for non-commercial purposes as long as they credit the source (i.e., you/your colleagues). The images you have selected come from our Art of Science (AOS) program, where we use research images from the IGB that have been enhanced aesthetically by our in-house artist. This has been one of our most popular programs, and because of the nature of the content we've been protective of how it can be used - we don't want it to be downloaded and used on people's personal websites, made into apparel, etc. As you may have seen we have a disclaimer on all the AOS pages that reads "Images not for public use without permission from the Carl R. Woese Institute for Genomic Biology." We know that anything put on the web can't be controlled, but we do want to perform our due diligence and attempt to limit unauthorized use. I see you have a CC license that allows the works to be edited which could pose an issue. Are there other options for display? Alternatively, we could provide the original research images that have not been artistically enhanced, and I'd be happy to provide a sample of what those look like if you are interested. We're excited about this opportunity so please let me know how we can contribute with regards to some of our more unique considerations! Best, Nick From: Abbey Bigler < abigler@iqsolutions.com> Sent: Thursday, April 1, 2021 8:17 AM To: Vasi, Nicholas Paul < nvasi@illinois.edu> Subject: RE: Request on Behalf of NIGMS Hi Nick, As I mentioned in the email thread below, I’m working with the National Institute of General Medical Sciences to collect images for their gallery. Dr. Robinson has graciously agreed to allow us to add the two images below to the NIGMS gallery: https://www.igb.illinois.edu/gallery/artofscience/02/a?page=12 https://www.igb.illinois.edu/gallery/artofscience/04/a?page=11 Would it be possible for you to provide high-resolution files of these images in jpeg, png, or tiff format? If you have any questions or if these images cannot be added to the NIGMS gallery for any reason, please let me know. Thank you! Abbey Abbey Bigler Senior Associate Science Writer [Contract] Communications and Public Liaison Branch National Institute of General Medical Sciences From: Jennifer Quirk < quirk@igb.illinois.edu> Sent: Wednesday, March 31, 2021 9:30 AM To: Abbey Bigler < abigler@iqsolutions.com> Cc: Vasi, Nicholas Paul < nvasi@illinois.edu> Subject: Re: Request on Behalf of NIGMS CAUTION: This email originated from an external sender Abbey, Thanks for your interest in the IGB images. I am copying Nick Vasi, the IGB Director of Communications and Outreach. He and his group control the distribution of Images like these and he will be glad to assist you. Please let me know if I can be of any further assistance. Jennifer Jennifer M. Quirk Associate Director Carl R. Woese Institute for Genomic Biology University of Illinois 1206 West Gregory Drive Urbana, IL 61801 217-244-8378 On 3/31/2021 8:14 AM, Abbey Bigler wrote: Dear Dr. Robinson, Thank you very much for allowing us to add these images to the NIGMS gallery. I will keep an eye out for Jennifer Quirk’s email. All the best, Abbey Abbey Bigler Senior Associate Science Writer [Contract] Communications and Public Liaison Branch National Institute of General Medical Sciences From: Gene Robinson < generobi@illinois.edu> Sent: Tuesday, March 30, 2021 11:36 PM To: Abbey Bigler < abigler@iqsolutions.com> Cc: Jennifer Quirk < quirk@igb.illinois.edu> Subject: Re: Request on Behalf of NIGMS CAUTION: This email originated from an external sender Dear Ms. Bigler, I am pleased that you're interested in using these images. IGB Associate Director Jennifer Quirk can facilitate getting the images in the formats you need. The captions are fine as they are. Thanks for your interest in our research. Sincerely, Gene Robinson On 3/30/21 1:20 PM, Abbey Bigler wrote: Dear Dr. Robinson, I work with the National Institute of General Medical Sciences, and I’m helping gather scientific images for the NIGMS Image and Video Gallery. We recently noticed the stunning image of bees from your lab on the Carl R. Woese Institute for Genomic Biology website. May we feature the two images linked to below in the gallery? MailScanner has detected a possible fraud attempt from "nam12.safelinks.protection.outlook.com" claiming to be https://www.igb.illinois.edu/gallery/artofscience/04/a?page=11 MailScanner has detected a possible fraud attempt from "nam12.safelinks.protection.outlook.com" claiming to be https://www.igb.illinois.edu/gallery/artofscience/02/a?page=12 We would also be happy to consider featuring any other images that you have from NIGMS-funded work (published or unpublished) and would like to share. The gallery is one of the most visited sections of the NIGMS website. We use items from the gallery in our digital and print publications, such as the Biomedical Beat blog, Pathways magazine, @NIGMS Twitter and NIGMS Facebook social media, exhibits, and myriad science education and outreach efforts. Other people may use items from the gallery for non-commercial purposes as long as they credit the source (i.e., you/your colleagues). Would you allow us to include one or more of your NIGMS-supported images in our gallery? If so, please provide the following: Written permission for inclusion in the NIGMS Image and Video Gallery. Please confirm the material is free of copyright restrictions. Credit information (full names and affiliations of the researcher[s] who took the image OR the name of the laboratory where the image was taken). High-resolution file(s) in standard formats (jpeg, png, or tiff). Any edits needed to make the below image titles accurate: For the image of multiple bees: “Honeybees marked with paint” For the brain image: “A honeybee brain” Any edits needed to make the below captions accurate: For the image with multiple bees: Researchers doing behavioral experiments with honeybees sometimes use paint or enamel to give individual bees distinguishing marks. The elaborate social structure and impressive learning and navigation abilities of bees make them a good model for behavioral and neurobiological research. Since the sequencing of the honeybee genome, published in 2006, bees have been used increasingly for research into the molecular basis for social interaction and other complex behaviors. For the image of the bee brain: Insect brains, like the honeybee brain shown here, are very different in shape from human brains. Despite that, bee and human brains have a lot in common, including many of the genes and neurochemicals they rely on in order to function. The bright green spots in this image indicate the presence of tyrosine hydroxylase, a gene that allows the brain to produce dopamine. Dopamine is involved in many important functions, such as the ability to experience pleasure. This image was captured using confocal microscopy. We hope to hear back from you by April 7. Thank you for considering sharing your fascinating images with us. Please feel free to email me with any questions. All the best, Abbey Abbey Bigler Senior Associate Science Writer [Contract] Communications and Public Liaison Branch National Institute of General Medical Sciences The contents of this message, together with any attachments, are only for the use of the individual or entity to which they were intended to be addressed and may contain information that is (i) owned or licensed by the sender and subject to protection pursuant to relevant copyright or other intellectual property laws, (ii) legally privileged, (iii) confidential and/or (iv) exempt from disclosure. If you have reason to believe you are not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this message, or any attachment, is strictly prohibited and an unauthorized, unlicensed use of such material. If you have received this message in error, please notify the original sender by return e-mail and delete this message, along with any attachments, from your computer. -- GENE E. ROBINSON Interim Dean, College of Liberal Arts & Sciences Director, Carl R. Woese Institute for Genomic Biology Swanlund Chair Center for Advanced Study Professor in Entomology and Neuroscience Director, Bee Research Facility University of Illinois Urbana-Champaign College of Liberal Arts & Sciences 2090 Lincoln Hall 702 S. Wright St. | M/C 448 Urbana, IL 61801 217.333.1350| generobi@illinois.edu MailScanner has detected a possible fraud attempt from "nam12.safelinks.protection.outlook.com" claiming to be www.las.illinois.edu Administrative Assistants: College of Liberal Arts & Sciences Angela Graham 217-333-1350| kingdon@illinois.edu Robinson Laboratory Tish Cundiff Room 2414 IGB 217-265-7614| lcundiff@illinois.edu facebook twitter instagram linkedin youtube Under the Illinois Freedom of Information Act any written communication to or from university employees regarding university business is a public record and may be subject to public disclosure | | | | 1,298 | 156,947 | 1,800 | | 2,596 | 557,888 | 3,600 | Genes, Tools and Techniques | | | | Gene Robinson, University of Illinois at Urbana-Champaign. | | | Honeybees marked with paint | Active | Photograph | | Researchers doing behavioral experiments with honeybees sometimes use paint or enamel to give individual bees distinguishing marks. The elaborate social structure and impressive learning and navigation abilities of bees make them good models for behavioral and neurobiological research. Since the sequencing of the honeybee genome, published in 2006, bees have been used increasingly for research into the molecular basis for social interaction and other complex behaviors. | | Claudia Lutz and Charley Nye, Robinson Lab, University of Illinois at Urbana-Champaign. | 8,252 | 21,956,366 | 6,305 | From: Abbey Bigler < abigler@iqsolutions.com> on behalf of Abbey Bigler Sent on: Thursday, April 1, 2021 2:59:39 PM To: Vasi, Nicholas Paul < nvasi@illinois.edu> Subject: RE: Request on Behalf of NIGMS Hi Nick, These are great! Please do send the links to the full-resolution images, and I’ll begin the process of adding them to the NIGMS gallery. Thank you, Abbey From: Vasi, Nicholas Paul < nvasi@illinois.edu> Sent: Thursday, April 1, 2021 10:26 AM To: Abbey Bigler < abigler@iqsolutions.com> Subject: Re: Request on Behalf of NIGMS CAUTION: This email originated from an external sender Hi Abbey, Thanks for your understanding, I appreciate it. I've attached some lower-res images here, please let me know if these are acceptable and I'll provide links to the full-resolution. -Nick From: Abbey Bigler < abigler@iqsolutions.com> Sent: Thursday, April 1, 2021 8:56 AM To: Vasi, Nicholas Paul < nvasi@illinois.edu> Subject: RE: Request on Behalf of NIGMS Hi Nick, Thank you for explaining! I understand your concern. Unfortunately, all the work in our gallery has to fall under the CC license that you mentioned, which allows the works to be edited. I’d greatly appreciate an opportunity to take a look at the unedited images and see if they’d work for the gallery instead. Best, Abbey From: Vasi, Nicholas Paul < nvasi@illinois.edu> Sent: Thursday, April 1, 2021 9:51 AM To: Abbey Bigler < abigler@iqsolutions.com> Subject: Re: Request on Behalf of NIGMS CAUTION: This email originated from an external sender Hi Abbey, I'd be happy to work with you, and can provide whatever you need. I did want to discuss one point from your email below: Other people may use items from the gallery for non-commercial purposes as long as they credit the source (i.e., you/your colleagues). The images you have selected come from our Art of Science (AOS) program, where we use research images from the IGB that have been enhanced aesthetically by our in-house artist. This has been one of our most popular programs, and because of the nature of the content we've been protective of how it can be used - we don't want it to be downloaded and used on people's personal websites, made into apparel, etc. As you may have seen we have a disclaimer on all the AOS pages that reads "Images not for public use without permission from the Carl R. Woese Institute for Genomic Biology." We know that anything put on the web can't be controlled, but we do want to perform our due diligence and attempt to limit unauthorized use. I see you have a CC license that allows the works to be edited which could pose an issue. Are there other options for display? Alternatively, we could provide the original research images that have not been artistically enhanced, and I'd be happy to provide a sample of what those look like if you are interested. We're excited about this opportunity so please let me know how we can contribute with regards to some of our more unique considerations! Best, Nick From: Abbey Bigler < abigler@iqsolutions.com> Sent: Thursday, April 1, 2021 8:17 AM To: Vasi, Nicholas Paul < nvasi@illinois.edu> Subject: RE: Request on Behalf of NIGMS Hi Nick, As I mentioned in the email thread below, I’m working with the National Institute of General Medical Sciences to collect images for their gallery. Dr. Robinson has graciously agreed to allow us to add the two images below to the NIGMS gallery: https://www.igb.illinois.edu/gallery/artofscience/02/a?page=12 https://www.igb.illinois.edu/gallery/artofscience/04/a?page=11 Would it be possible for you to provide high-resolution files of these images in jpeg, png, or tiff format? If you have any questions or if these images cannot be added to the NIGMS gallery for any reason, please let me know. Thank you! Abbey Abbey Bigler Senior Associate Science Writer [Contract] Communications and Public Liaison Branch National Institute of General Medical Sciences From: Jennifer Quirk < quirk@igb.illinois.edu> Sent: Wednesday, March 31, 2021 9:30 AM To: Abbey Bigler < abigler@iqsolutions.com> Cc: Vasi, Nicholas Paul < nvasi@illinois.edu> Subject: Re: Request on Behalf of NIGMS CAUTION: This email originated from an external sender Abbey, Thanks for your interest in the IGB images. I am copying Nick Vasi, the IGB Director of Communications and Outreach. He and his group control the distribution of Images like these and he will be glad to assist you. Please let me know if I can be of any further assistance. Jennifer Jennifer M. Quirk Associate Director Carl R. Woese Institute for Genomic Biology University of Illinois 1206 West Gregory Drive Urbana, IL 61801 217-244-8378 On 3/31/2021 8:14 AM, Abbey Bigler wrote: Dear Dr. Robinson, Thank you very much for allowing us to add these images to the NIGMS gallery. I will keep an eye out for Jennifer Quirk’s email. All the best, Abbey Abbey Bigler Senior Associate Science Writer [Contract] Communications and Public Liaison Branch National Institute of General Medical Sciences From: Gene Robinson < generobi@illinois.edu> Sent: Tuesday, March 30, 2021 11:36 PM To: Abbey Bigler < abigler@iqsolutions.com> Cc: Jennifer Quirk < quirk@igb.illinois.edu> Subject: Re: Request on Behalf of NIGMS CAUTION: This email originated from an external sender Dear Ms. Bigler, I am pleased that you're interested in using these images. IGB Associate Director Jennifer Quirk can facilitate getting the images in the formats you need. The captions are fine as they are. Thanks for your interest in our research. Sincerely, Gene Robinson On 3/30/21 1:20 PM, Abbey Bigler wrote: Dear Dr. Robinson, I work with the National Institute of General Medical Sciences, and I’m helping gather scientific images for the NIGMS Image and Video Gallery. We recently noticed the stunning image of bees from your lab on the Carl R. Woese Institute for Genomic Biology website. May we feature the two images linked to below in the gallery? MailScanner has detected a possible fraud attempt from "nam12.safelinks.protection.outlook.com" claiming to be https://www.igb.illinois.edu/gallery/artofscience/04/a?page=11 MailScanner has detected a possible fraud attempt from "nam12.safelinks.protection.outlook.com" claiming to be https://www.igb.illinois.edu/gallery/artofscience/02/a?page=12 We would also be happy to consider featuring any other images that you have from NIGMS-funded work (published or unpublished) and would like to share. The gallery is one of the most visited sections of the NIGMS website. We use items from the gallery in our digital and print publications, such as the Biomedical Beat blog, Pathways magazine, @NIGMS Twitter and NIGMS Facebook social media, exhibits, and myriad science education and outreach efforts. Other people may use items from the gallery for non-commercial purposes as long as they credit the source (i.e., you/your colleagues). Would you allow us to include one or more of your NIGMS-supported images in our gallery? If so, please provide the following: Written permission for inclusion in the NIGMS Image and Video Gallery. Please confirm the material is free of copyright restrictions. Credit information (full names and affiliations of the researcher[s] who took the image OR the name of the laboratory where the image was taken). High-resolution file(s) in standard formats (jpeg, png, or tiff). Any edits needed to make the below image titles accurate: For the image of multiple bees: “Honeybees marked with paint” For the brain image: “A honeybee brain” Any edits needed to make the below captions accurate: For the image with multiple bees: Researchers doing behavioral experiments with honeybees sometimes use paint or enamel to give individual bees distinguishing marks. The elaborate social structure and impressive learning and navigation abilities of bees make them a good model for behavioral and neurobiological research. Since the sequencing of the honeybee genome, published in 2006, bees have been used increasingly for research into the molecular basis for social interaction and other complex behaviors. For the image of the bee brain: Insect brains, like the honeybee brain shown here, are very different in shape from human brains. Despite that, bee and human brains have a lot in common, including many of the genes and neurochemicals they rely on in order to function. The bright green spots in this image indicate the presence of tyrosine hydroxylase, a gene that allows the brain to produce dopamine. Dopamine is involved in many important functions, such as the ability to experience pleasure. This image was captured using confocal microscopy. We hope to hear back from you by April 7. Thank you for considering sharing your fascinating images with us. Please feel free to email me with any questions. All the best, Abbey Abbey Bigler Senior Associate Science Writer [Contract] Communications and Public Liaison Branch National Institute of General Medical Sciences The contents of this message, together with any attachments, are only for the use of the individual or entity to which they were intended to be addressed and may contain information that is (i) owned or licensed by the sender and subject to protection pursuant to relevant copyright or other intellectual property laws, (ii) legally privileged, (iii) confidential and/or (iv) exempt from disclosure. If you have reason to believe you are not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this message, or any attachment, is strictly prohibited and an unauthorized, unlicensed use of such material. If you have received this message in error, please notify the original sender by return e-mail and delete this message, along with any attachments, from your computer. -- GENE E. ROBINSON Interim Dean, College of Liberal Arts & Sciences Director, Carl R. Woese Institute for Genomic Biology Swanlund Chair Center for Advanced Study Professor in Entomology and Neuroscience Director, Bee Research Facility University of Illinois Urbana-Champaign College of Liberal Arts & Sciences 2090 Lincoln Hall 702 S. Wright St. | M/C 448 Urbana, IL 61801 217.333.1350| generobi@illinois.edu MailScanner has detected a possible fraud attempt from "nam12.safelinks.protection.outlook.com" claiming to be www.las.illinois.edu Administrative Assistants: College of Liberal Arts & Sciences Angela Graham 217-333-1350| kingdon@illinois.edu Robinson Laboratory Tish Cundiff Room 2414 IGB 217-265-7614| lcundiff@illinois.edu facebook twitter instagram linkedin youtube Under the Illinois Freedom of Information Act any written communication to or from university employees regarding university business is a public record and may be subject to public disclosure | | Research organisms, insects | | 2,062 | 163,620 | 1,576 | | 4,125 | 669,030 | 3,152 | Tools and Techniques | | | | Gene Robinson, University of Illinois at Urbana-Champaign. | | | CCP enzyme | Active | Illustration | | The enzyme CCP is found in the mitochondria of baker’s yeast. Scientists study the chemical reactions that CCP triggers, which involve a water molecule, iron, and oxygen. This structure was determined using an X-ray free electron laser. | | Image from the RCSB PDB (rcsb.org) of PDB ID 5EJX (Chreifi, G., Baxter, E.L., Doukov, T., Cohen, A.E., McPhillips, S.E., Song, J., Meharenna, Y.T., Soltis, S.M., Poulos, T.L.) (2016) <em>Proc. Natl. Acad. Sci. U.S.A.</em> 113: 1226-1231). | 500 | 58,549 | 500 | | | Ribbon diagram, protein | | | | | | | | | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | | | Protein Data Bank. | | | Crystals of CCD-1 in complex with cefotaxime | Active | Photograph | | CCD-1 is an enzyme produced by the bacterium <em>Clostridioides difficile</em> that helps it resist antibiotics. Here, researchers crystallized bound pairs of CCD-1 molecules and molecules of the antibiotic cefotaxime. This enabled their structure to be studied using X-ray crystallography. <Br><Br> Related to images <a href="/Pages/DetailPage.aspx?imageID2=6765">6765</a>, <a href="/Pages/DetailPage.aspx?imageID2=6766">6766</a>, and <a href="/Pages/DetailPage.aspx?imageID2=6767">6767</a>. | | Nichole K. Stewart, University of Notre Dame; Clyde A. Smith, Stanford University; Marta Toth, University of Notre Dame; Anastasiya Stasyuk, Stanford University; and Sergei B. Vakulenko, University of Notre Dame. | 409 | 391,197 | 409 | Related to the Journal of Structural Biology paper “The crystal structures of CDD-1, the intrinsic class D β-lactamase from the pathogenic Gram-positive bacterium Clostridioides difficile, and its complex with cefotaxime”: https://www.sciencedirect.com/science/article/abs/pii/S1047847719302023?via%3Dihub Email granting permission: Good evening Abbey. Clyde Smith got back to me about the images. They are not those published in the paper describing this work (that paper is attached for your reference). We do not see any copyright issues or restrictions. The credit info is found in the paper. The diffraction image was recorded at SSRL. Attached is the word file with some small suggested edits to the captions. Please to not hesitate to be back in touch if you need additional information or clarification. With best regards, Keith | | Xray, resistance | | | | | | | | | Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | | | Keith Hodgson, Stanford University. | | | X-ray diffraction pattern from a crystallized cefotaxime-CCD-1 complex | Active | Photograph | | CCD-1 is an enzyme produced by the bacterium <em>Clostridioides difficile</em> that helps it resist antibiotics. Researchers crystallized complexes where a CCD-1 molecule and a molecule of the antibiotic cefotaxime were bound together. Then, they shot X-rays at the complexes to determine their structure—a process known as X-ray crystallography. This image shows the X-ray diffraction pattern of a complex. <Br><Br> Related to images <a href="/Pages/DetailPage.aspx?imageID2=6764">6764</a>, <a href="/Pages/DetailPage.aspx?imageID2=6766">6766</a>, and <a href="/Pages/DetailPage.aspx?imageID2=6767">6767</a>. | | Nichole K. Stewart, University of Notre Dame; Clyde A. Smith, Stanford University; Marta Toth, University of Notre Dame; Anastasiya Stasyuk, Stanford University; and Sergei B. Vakulenko, University of Notre Dame. | 301 | 88,183 | 350 | Related to the Journal of Structural Biology paper “The crystal structures of CDD-1, the intrinsic class D β-lactamase from the pathogenic Gram-positive bacterium Clostridioides difficile, and its complex with cefotaxime”: https://www.sciencedirect.com/science/article/abs/pii/S1047847719302023?via%3Dihub Permission email: Good evening Abbey. Clyde Smith got back to me about the images. They are not those published in the paper describing this work (that paper is attached for your reference). We do not see any copyright issues or restrictions. The credit info is found in the paper. The diffraction image was recorded at SSRL. Attached is the word file with some small suggested edits to the captions. Please to not hesitate to be back in touch if you need additional information or clarification. With best regards, Keith | | Xray, resistance | | 150 | 5,499 | 174 | | 150 | 5,499 | 174 | Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | | | Keith Hodgson, Stanford University. | | | Ribbon diagram of a cefotaxime-CCD-1 complex | Active | Illustration | | CCD-1 is an enzyme produced by the bacterium <em>Clostridioides difficile</em> that helps it resist antibiotics. Using X-ray crystallography, researchers determined the structure of a CCD-1 molecule and a molecule of the antibiotic cefotaxime bound together. The structure revealed that CCD-1 provides extensive hydrogen bonding and stabilization of the antibiotic in the active site, leading to efficient degradation of the antibiotic. <Br><Br> Related to images <a href="/Pages/DetailPage.aspx?imageID2=6764">6764</a>, <a href="/Pages/DetailPage.aspx?imageID2=6765">6765</a>, and <a href="/Pages/DetailPage.aspx?imageID2=6767">6767</a>. | | Nichole K. Stewart, University of Notre Dame; Clyde A. Smith, Stanford University; Marta Toth, University of Notre Dame; Anastasiya Stasyuk, Stanford University; and Sergei B. Vakulenko, University of Notre Dame. | 455 | 239,784 | 607 | Related to the Journal of Structural Biology paper “The crystal structures of CDD-1, the intrinsic class D β-lactamase from the pathogenic Gram-positive bacterium Clostridioides difficile, and its complex with cefotaxime”: https://www.sciencedirect.com/science/article/abs/pii/S1047847719302023?via%3Dihub Permission email: Good evening Abbey. Clyde Smith got back to me about the images. They are not those published in the paper describing this work (that paper is attached for your reference). We do not see any copyright issues or restrictions. The credit info is found in the paper. The diffraction image was recorded at SSRL. Attached is the word file with some small suggested edits to the captions. Please to not hesitate to be back in touch if you need additional information or clarification. With best regards, Keith | | Xray, resistance | | 227 | 17,311 | 304 | | 227 | 17,311 | 304 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | | | Keith Hodgson, Stanford University. | | | Space-filling model of a cefotaxime-CCD-1 complex | Active | Illustration | | CCD-1 is an enzyme produced by the bacterium <em>Clostridioides difficile</em> that helps it resist antibiotics. Using X-ray crystallography, researchers determined the structure of a complex between CCD-1 and the antibiotic cefotaxime (purple, yellow, and blue molecule). The structure revealed that CCD-1 provides extensive hydrogen bonding (shown as dotted lines) and stabilization of the antibiotic in the active site, leading to efficient degradation of the antibiotic. <Br><Br> Related to images <a href="/Pages/DetailPage.aspx?imageID2=6764">6764</a>, <a href="/Pages/DetailPage.aspx?imageID2=6765">6765</a>, and <a href="/Pages/DetailPage.aspx?imageID2=6766">6766</a>. | | Nichole K. Stewart, University of Notre Dame; Clyde A. Smith, Stanford University; Marta Toth, University of Notre Dame; Anastasiya Stasyuk, Stanford University; and Sergei B. Vakulenko, University of Notre Dame. | 245 | 202,493 | 619 | | | Xray, resistance | | 122 | 11,591 | 308 | | 122 | 11,591 | 308 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures, Tools and Techniques | | | | Keith Hodgson, Stanford University. | | | Rhodopsin bound to visual arrestin | Active | Illustration | | Rhodopsin is a pigment in the rod cells of the retina (back of the eye). It is extremely light-sensitive, supporting vision in low-light conditions. Here, it is attached to arrestin, a protein that sends signals in the body. This structure was determined using an X-ray free electron laser. | | Image from the RCSB PDB (rcsb.org) of PDB ID 5W0P (Zhou, X.E., He, Y., de Waal, P.W., Gao, X., Kang, Y., Van Eps, N., Yin, Y., Pal, K., Goswami, D., White, T.A., Barty, A., Latorraca, N.R., Chapman, H.N., Hubbell, W.L., Dror, R.O., Stevens, R.C., Cherezov, V., Gurevich, V.V., Griffin, P.R., Ernst, O.P., Melcher, K., Xu, H.E.) (2017) <em>Cell</em> 170: 457-469.e13). | 500 | 62,557 | 500 | | | ribbon diagram | | 250 | 9,438 | 250 | | 250 | 9,438 | 250 | Molecular Structures, Tools and Techniques | | | | Protein Data Bank. | | | Culex quinquefasciatus mosquito larva | Active | Photograph | | A mosquito larva with genes edited by CRISPR. The red-orange glow is a fluorescent protein used to track the edits. This species of mosquito, <em>Culex quinquefasciatus</em>, can transmit West Nile virus, Japanese encephalitis virus, and avian malaria, among other diseases. The researchers who took this image developed a gene-editing toolkit for <em>Culex quinquefasciatus</em> that could ultimately help stop the mosquitoes from spreading pathogens. The work is described in the <em>Nature Communications</em> paper "<a href=https:// www.nature.com/articles/s41467-021-23239-0>Optimized CRISPR tools and site-directed transgenesis towards gene drive development in <em>Culex quinquefasciatus</em> mosquitoes</a>" by Feng et al. Related to image <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6770>6770</a> and video <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6771>6771</a>. | | Gantz Lab, University of California, San Diego. | 675 | 1,637,156 | 1,200 | Related to the Nature Communications paper “Optimized CRISPR tools and site-directed transgenesis towards gene drive development in Culex quinquefasciatus mosquitoes”: https://www.nature.com/articles/s41467-021-23239-0 Permission email: Written permission for inclusion in the NIGMS Image and Video Gallery. Please confirm the material is free of copyright restrictions. Yes, I approve. I personally generated the images/videos and there is no copyright on them. High-resolution file(s) in standard formats (jpeg, png, or tiff for images; mp4 for videos). Here is a Dropbox link where you can have access to higher resolution images. Additionally you will have access to another video and another image: https://www.dropbox.com/sh/hn0f26kxx9qmh9p/AAAj6DKSX1pMEHqr0Au7qTsAa?dl=0 The type of camera/microscope used to capture each image or video. The zoomed in images (green-ish background) were taken with a Canon Rebel T7i camera on a Leica SMZ25 Stereo-microscope. The images taken from the side (where you can see the surface of the water) were taken with a Canon Rebel T7i camera. Any edits needed to make the attached titles, descriptions, and credit information accurate. I added minor edits using track changes in the document you sent. Please let me know if you want more feedback after adding/changing any image. | | Insects, bugs, larvae | | 168 | 4,395 | 300 | | 337 | 18,478 | 600 | Genes, Injury and Illness, Tools and Techniques | | | | Valentino Gantz, University of California, San Diego. | | | Group of Culex quinquefasciatus mosquito larvae | Active | Photograph | | Mosquito larvae with genes edited by CRISPR. This species of mosquito, <em>Culex quinquefasciatus</em>, can transmit West Nile virus, Japanese encephalitis virus, and avian malaria, among other diseases. The researchers who took this image developed a gene-editing toolkit for <em>Culex quinquefasciatus</em> that could ultimately help stop the mosquitoes from spreading pathogens. The work is described in the <em>Nature Communications</em> paper "<a href=https:// www.nature.com/articles/s41467-021-23239-0>Optimized CRISPR tools and site-directed transgenesis towards gene drive development in <em>Culex quinquefasciatus</em> mosquitoes</a>" by Feng et al. Related to image <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6769>6769</a> and video <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6771>6771</a>. | | Gantz Lab, University of California, San Diego. | 675 | 2,463,936 | 1,200 | Related to the Nature Communications paper “Optimized CRISPR tools and site-directed transgenesis towards gene drive development in Culex quinquefasciatus mosquitoes”: https://www.nature.com/articles/s41467-021-23239-0 Permission email: Written permission for inclusion in the NIGMS Image and Video Gallery. Please confirm the material is free of copyright restrictions. Yes, I approve. I personally generated the images/videos and there is no copyright on them. High-resolution file(s) in standard formats (jpeg, png, or tiff for images; mp4 for videos). Here is a Dropbox link where you can have access to higher resolution images. Additionally you will have access to another video and another image: https://www.dropbox.com/sh/hn0f26kxx9qmh9p/AAAj6DKSX1pMEHqr0Au7qTsAa?dl=0 The type of camera/microscope used to capture each image or video. The zoomed in images (green-ish background) were taken with a Canon Rebel T7i camera on a Leica SMZ25 Stereo-microscope. The images taken from the side (where you can see the surface of the water) were taken with a Canon Rebel T7i camera. Any edits needed to make the attached titles, descriptions, and credit information accurate. I added minor edits using track changes in the document you sent. Please let me know if you want more feedback after adding/changing any image. | | Insects, bugs | | 168 | 6,489 | 300 | | 337 | 32,099 | 600 | Genes, Injury and Illness, Tools and Techniques | | | | Valentino Gantz, University of California, San Diego. | | | Culex quinquefasciatus mosquito larvae | Active | Video | | Mosquito larvae with genes edited by CRISPR swimming in water. This species of mosquito, <em>Culex quinquefasciatus</em>, can transmit West Nile virus, Japanese encephalitis virus, and avian malaria, among other diseases. The researchers who took this video optimized the gene-editing tool CRISPR for <em>Culex quinquefasciatus</em> that could ultimately help stop the mosquitoes from spreading pathogens. The work is described in the <em>Nature Communications</em> paper "<a href=https:// www.nature.com/articles/s41467-021-23239-0>Optimized CRISPR tools and site-directed transgenesis towards gene drive development in <em>Culex quinquefasciatus</em> mosquitoes</a>" by Feng et al. Related to images <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6769>6769</a> and <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6770>6770</a>. | | Gantz Lab, University of California, San Diego. | | 17,797,954 | | Related to the Nature Communications paper “Optimized CRISPR tools and site-directed transgenesis towards gene drive development in Culex quinquefasciatus mosquitoes”: https://www.nature.com/articles/s41467-021-23239-0 Permission email: Written permission for inclusion in the NIGMS Image and Video Gallery. Please confirm the material is free of copyright restrictions. Yes, I approve. I personally generated the images/videos and there is no copyright on them. High-resolution file(s) in standard formats (jpeg, png, or tiff for images; mp4 for videos). Here is a Dropbox link where you can have access to higher resolution images. Additionally you will have access to another video and another image: https://www.dropbox.com/sh/hn0f26kxx9qmh9p/AAAj6DKSX1pMEHqr0Au7qTsAa?dl=0 The type of camera/microscope used to capture each image or video. The zoomed in images (green-ish background) were taken with a Canon Rebel T7i camera on a Leica SMZ25 Stereo-microscope. The images taken from the side (where you can see the surface of the water) were taken with a Canon Rebel T7i camera. Any edits needed to make the attached titles, descriptions, and credit information accurate. I added minor edits using track changes in the document you sent. Please let me know if you want more feedback after adding/changing any image. | | Insects, bugs, larva | | | | | | | | | Genes, Injury and Illness, Tools and Techniques | | | | Valentino Gantz, University of California, San Diego. | | | Yeast cells responding to a glucose shortage | Active | Photograph | | These yeast cells were exposed to a glucose (sugar) shortage. This caused the cells to compartmentalize HMGCR (green)—an enzyme involved in making cholesterol—to a patch on the nuclear envelope next to the vacuole/lysosome (purple). This process enhanced HMGCR activity and helped the yeast adapt to the glucose shortage. Researchers hope that understanding how yeast regulate cholesterol could ultimately lead to new ways to treat high cholesterol in people. This image was captured using a fluorescence microscope. | | Sean Rogers, Henne Lab, Department of Cell Biology, University of Texas Southwestern Medical Center. | 400 | 205,606 | 400 | Related to the eLife paper “Glucose restriction drives spatial reorganization of mevalonate metabolism”: https://elifesciences.org/articles/62591 Permission letter (June 14, 2021): To Whom It May Concern: This is to confirm that the NIH has written permission to use this NIGMS-supported image. The image is free of copyright restrictions. Sincerely, Description: Henne_Signature W. Mike Henne, Ph.D. Assistant Professor W.W. Caruth Jr., Endowed Scholar | | | | 200 | 6,050 | 200 | | 200 | 6,050 | 200 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | | | Mike Henne, University of Texas Southwestern Medical Center. | | | Endoplasmic reticulum abnormalities | Active | Photograph | | Human cells with the gene that codes for the protein FIT2 deleted. Green indicates an endoplasmic reticulum (ER) resident protein. The lack of FIT2 affected the structure of the ER and caused the resident protein to cluster in ER membrane aggregates, seen as large, bright-green spots. Red shows where the degradation of cell parts—called autophagy—is taking place, and the nucleus is visible in blue. This image was captured using a confocal microscope. Related to image <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6774>6774</a>. | | Michel Becuwe, Harvard University. | 839 | 2,111,981 | 839 | Originally published in the Journal of Cell Biology paper “FIT2 is an acyl–coenzyme A diphosphatase crucial for endoplasmic reticulum homeostasis”: https://doi.org/10.1083/jcb.202006111 Researcher approved use in May/June 2021. | | Abnormality, microscopy, homeostasis | | 209 | 4,381 | 209 | | 419 | 17,877 | 419 | Cells, Genes, Tools and Techniques | | | | Michel Becuwe, Harvard University. | | | Endoplasmic reticulum abnormalities 2 | Active | Photograph | | Human cells with the gene that codes for the protein FIT2 deleted. After an experimental intervention, they are expressing a nonfunctional version of FIT2, shown in green. The lack of functional FIT2 affected the structure of the endoplasmic reticulum (ER), and the nonfunctional protein clustered in ER membrane aggregates, seen as large bright-green spots. Lipid droplets are shown in red, and the nucleus is visible in gray. This image was captured using a confocal microscope. Related to image <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6773>6773</a>. | | Michel Becuwe, Harvard University. | 960 | 2,768,404 | 960 | Originally published in the Journal of Cell Biology paper “FIT2 is an acyl–coenzyme A diphosphatase crucial for endoplasmic reticulum homeostasis”: https://doi.org/10.1083/jcb.202006111 | | Abnormality, microscopy, homeostasis, lipids | | 240 | 4,144 | 240 | | 480 | 18,341 | 480 | Cells, Genes, Tools and Techniques | | 8/5/2021 | | Michel Becuwe, Harvard University. | | | Tracking embryonic zebrafish cells | Active | Photograph | | To better understand cell movements in developing embryos, researchers isolated cells from early zebrafish embryos and grew them as clusters. Provided with the right signals, the clusters replicated some cell movements seen in intact embryos. Each line in this image depicts the movement of a single cell. The image was created using time-lapse confocal microscopy. Related to video <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6776>6776</a>. | | Margot LK Williams and Liliana Solnica-Krezel, Washington University School of Medicine in St. Louis. | 512 | 786,853 | 512 | Originally published in the eLife paper “Nodal and planar cell polarity signaling cooperate to regulate zebrafish convergence and extension gastrulation movements”: https://elifesciences.org/articles/54445 | | Research organisms, microscope | | 256 | 16,278 | 256 | | 256 | 16,278 | 256 | Cells, Tools and Techniques | | 8/5/2021 | | Liliana Solnica-Krezel, Washington University School of Medicine in St. Louis. | | | Tracking cells in a gastrulating zebrafish embryo | Active | Video | | During development, a zebrafish embryo is transformed from a ball of cells into a recognizable body plan by sweeping convergence and extension cell movements. This process is called gastrulation. Each line in this video represents the movement of a single zebrafish embryo cell over the course of 3 hours. The video was created using time-lapse confocal microscopy. Related to image <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6775>6775</a>. | | Margot LK Williams and Liliana Solnica-Krezel, Washington University School of Medicine in St. Louis. | | 3,647,213 | | Originally published in the eLife paper “Nodal and planar cell polarity signaling cooperate to regulate zebrafish convergence and extension gastrulation movements”: https://elifesciences.org/articles/54445 | | Research organisms, microscope | | | | | | | | | Cells, Tools and Techniques | | 8/5/2021 | | Liliana Solnica-Krezel, Washington University School of Medicine in St. Louis. | | | Human endoplasmic reticulum membrane protein complex | Active | Video | | A 3D model of the human endoplasmic reticulum membrane protein complex (EMC) that identifies its nine essential subunits. The EMC plays an important role in making membrane proteins, which are essential for all cellular processes. This is the first atomic-level depiction of the EMC. Its structure was obtained using single-particle cryo-electron microscopy. | | Giovani Pinton Tomaleri, Voorhees Laboratory, California Institute of Technology. | | 4,939,689 | | | | ER, cryo-EM | | | | | | | | | Cells, Molecular Structures, Tools and Techniques | | | | Rebecca Voorhees, California Institute of Technology. | | | Brain waves of a patient anesthetized with propofol | Active | Illustration | | A representation of a patient’s brain waves after receiving the anesthetic propofol. All anesthetics create brain wave changes that vary depending on the patient’s age and the type and dose of anesthetic used. These changes are visible in raw electroencephalogram (EEG) readings, but they’re easier to interpret using a spectrogram where the signals are broken down by time (x-axis), frequency (y-axis), and power (color scale). This spectrogram shows the changes in brain waves before, during, and after propofol-induced anesthesia. The patient is unconscious from minute 5, upon propofol administration, through minute 69 (change in power and frequency). But, between minutes 35 and 48, the patient fell into a profound state of unconsciousness (disappearance of dark red oscillations between 8 to 12 Hz), which required the anesthesiologist to adjust the rate of propofol administration. The propofol was stopped at minute 62 and the patient woke up around minute 69. | | Ohyoon Kwon, Massachusetts General Hospital/Harvard Medical School; and Emery N. Brown, M.D., Ph.D., Massachusetts General Hospital/Harvard Medical School, Picower Institute for Learning and Memory, and Massachusetts Institute of Technology. | 540 | 73,014 | 960 | Technical description from Dr. Brown: Each anesthetic drug creates strong systematic oscillations in the patient’s brain waves following administration. The oscillations are easily visible in the electroencephalogram (EEG) and change systematically with anesthetic class, anesthetic dose, and patient age. Although the oscillations are clearly visible in raw EEGs, they are much easier to see and interpret using the spectrogram. The spectrogram is a decomposition of the EEG signal by time (x-axis), frequency (y-axis), and amplitude or power (color scale). The power is expressed on a logarithmic scale in decibels. High amplitude or high power is red, whereas low amplitude or low power is blue. The spectrogram is shown here for the anesthetic propofol, which is the most widely used anesthetic around the world. The two large red bands show that propofol produces oscillations between 8 to 12 Hz (cycles/sec), termed alpha oscillations; and other oscillations between 0.1 and 4 Hz, termed slow-delta oscillations. The 5 time-domain traces show the raw EEG signals at the indicated times. Anesthesia is started at approximately minute 5 by administering a bolus of propofol. At this point, the alpha and slow delta oscillations rapidly appear, and the patient immediately becomes unconscious. From then until minute 69, unconsciousness is maintained by administering a continuous intravenous infusion of propofol. During the time from minute 5 to minute 35, the patient’s alpha and slow delta bands are readily visible, and the patient is unconscious. The alpha band appears to break up between minute 35 and minute 48. Here, the patient is in burst suppression, a profound state of unconsciousness. The anesthesiologist brings the patient out of burst suppression by turning down the rate of the propofol infusion. The alpha oscillations reappear strongly at minute 48 as the burst-suppression period ends. Shortly after the infusion is turned off, at about minute 62, the alpha oscillations disappear, and the patient wakes up around minute 69. | | Anesthesia | | 135 | 5,431 | 240 | | 270 | 21,058 | 480 | Chemistry, Biochemistry, and Pharmacology | | 8/24/2021 | | Emery N. Brown, M.D., Ph.D., Massachusetts General Hospital/Harvard Medical School, Picower Institute for Learning and Memory, and Massachusetts Institute of Technology. | | | Calling Cards in a mouse brain | Active | Photograph | | The green spots in this mouse brain are cells labeled with Calling Cards, a technology that records molecular events in brain cells as they mature. Understanding these processes during healthy development can guide further research into what goes wrong in cases of neuropsychiatric disorders. Also fluorescently labeled in this image are neurons (red) and nuclei (blue). Calling Cards and its application are described in the <em>Cell</em> paper “<a href=https:// www.sciencedirect.com/science/article/pii/S009286742030814X>Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells</a>” by Moudgil et al.; and the <em>Proceedings of the National Academy of Sciences</em> paper “<a href=https:// www.pnas.org/content/117/18/10003>A viral toolkit for recording transcription factor–DNA interactions in live mouse tissues</a>” by Cammack et al. The technology was also featured in the <em>NIH Director’s Blog</em> post <a href=https://directorsblog.nih.gov/2021/08/24/the-amazing-brain-tracking-molecular-events-with-calling-cards-in-the-living-brain/>The Amazing Brain: Tracking Molecular Events with Calling Cards</a>. <Br><Br> Related to video <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6781>6781</a>. | | Allen Yen, Lab of Joseph Dougherty, Washington University School of Medicine in St. Louis. | 10,992 | 44,747,995 | 16,224 | Permission for use of the image was granted by Robi Mitra, Joe Dougherty, and Allen Yen on August 26, 2021. From: Dougherty, Joseph < jdougherty@wustl.edu> Sent: Thursday, August 26, 2021 9:49 PM To: Mitra, Robi < rmitra@wustl.edu>; Abbey Bigler < abigler@iqsolutions.com> Cc: Yen, Allen < a.yen@wustl.edu> Subject: Re: Request on Behalf of NIGMS That would be fine by me.! From: Mitra, Robi < rmitra@wustl.edu> Sent: Thursday, August 26, 2021 7:34 PM To: Abbey Bigler < abigler@iqsolutions.com> Cc: Yen, Allen < a.yen@wustl.edu>; Dougherty, Joseph < jdougherty@wustl.edu> Subject: Re: Request on Behalf of NIGMS Hi Abbey, >Could we feature the video in the NIGMS gallery? We would also be happy to consider featuring any other images/videos that you have from NIGMS-funded work (published or unpublished) and would like to share. I'm cc'ing Allen Yen and Joe Dougherty who collected the data. Allen is a graduate student in Joe's lab. I am enthusiastic about your proposal, but they would have to sign off on this, since, well, they collected it. best, Rob | | nerve cells, neuroscience | | 2,748 | 1,431,124 | 4,056 | | 5,496 | 6,580,251 | 8,112 | Cells, Tools and Techniques | | | | Allen Yen, Lab of Joseph Dougherty, Washington University School of Medicine in St. Louis. | | | Video of Calling Cards in a mouse brain | Active | Video | | The green spots in this mouse brain are cells labeled with Calling Cards, a technology that records molecular events in brain cells as they mature. Understanding these processes during healthy development can guide further research into what goes wrong in cases of neuropsychiatric disorders. Also fluorescently labeled in this video are neurons (red) and nuclei (blue). Calling Cards and its application are described in the <em>Cell</em> paper “<a href=https:// www.sciencedirect.com/science/article/pii/S009286742030814X>Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells</a>” by Moudgil et al.; and the <em>Proceedings of the National Academy of Sciences</em> paper “<a href=https:// www.pnas.org/content/117/18/10003>A viral toolkit for recording transcription factor–DNA interactions in live mouse tissues</a>” by Cammack et al. This video was created for the <em>NIH Director’s Blog</em> post <a href=https://directorsblog.nih.gov/2021/08/24/the-amazing-brain-tracking-molecular-events-with-calling-cards-in-the-living-brain>The Amazing Brain: Tracking Molecular Events with Calling Cards</a>. <Br><Br> Related to image <a href=https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6780>6780</a>. | | Allen Yen, Lab of Joseph Dougherty, Washington University School of Medicine in St. Louis; and <em>NIH Director’s Blog</em>. | | 21,976,345 | | Hi Abbey et. al – I see that Drs. Yen, Dougherty, and Mitra have given their permission. The image belongs to them, and it was Dr. Collins’ pleasure to have their permission to feature it and the excellent science on his blog. Please feel free to use the image, as modified by Donny into a video. We would just ask that NIGMS also give credit to the NIH Director’s Blog and add a link/reference to the blog post, where your readers could get more information about the science. | | nerve cells, neuroscience | | | | | | | | | Cells, Tools and Techniques | | | | <em>NIH Director’s Blog</em>. | | | Mitosis and meiosis compared-labeled | Active | Illustration | | Meiosis is used to make sperm and egg cells. During meiosis, a cell's chromosomes are copied once, but the cell divides twice. During mitosis, the chromosomes are copied once, and the cell divides once. For simplicity, cells are illustrated with only three pairs of chromosomes.<Br><Br> See image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=1333">1333</a> for an unlabeled version of this illustration. | | Judith Stoffer | 1,750 | 319,635 | 1,200 | | | Alt text: On the left, a cell goes through the stages of mitosis to split into two cells that each have two sets of chromosomes. On the right, a cell goes through the phases of meiosis to divide into four cells that each have a single set of chromosomes. | | 437 | 10,383 | 300 | | 875 | 45,668 | 600 | Cells | | | | Judith Stoffer | | | Two mouse fibroblast cells | Active | Photograph | | Two mouse fibroblasts, one of the most common types of cells in mammalian connective tissue. They play a key role in wound healing and tissue repair. This image was captured using structured illumination microscopy. | | Dylan T. Burnette, Vanderbilt University School of Medicine. | 4,920 | 7,737,444 | 8,000 | Alt text: Two round cells with threadlike projections extending from them. Preparation: DNA was labeled with DAPI, and mitochondria were labeled by expressing a mitochondrial protein, cox8a. 3D image stacks were acquired with a structured illumination microscope, and a 3D color projection was created by combining both channels into a single stack and using the Temporal Color-code plug-in in Fiji (Fiji Is Just ImageJ). Permission email: HI Abbey, Thank you for checking back. I would be happy for you to use this image and video for the NIGMS gallery. I own the copyright to this material. The text you requested is below followed by a Dropbox link to the files. Cheers, Dylan Image: Two mouse fibroblast cells Preparation: DNA was labeled with DAPI and mitochondria were labeled by expressing a mitochondrial protein, cox8a. 3D image stacks were acquired with a structured illumination microscope and a 3D color projection was created by combining both channels into a single stack and using the Temporal Color-code plugin in Fiji (Fiji Is Just ImageJ). Technique: Structured Illumination Microscopy (SIM) Video: DNA during cell death and cell division Specimen: DNA during cell death and cell division Preparation: This time-lapse shows two cells over a 2 hour period. The one on the bottom goes through programmed cell death and the one on the top goes through cell division. As such, the movie starts with two cells and, even though one dies, ends with two cells. Technique: Confocal https://www.dropbox.com/sh/deuy174kgfyqndu/AADeRA6j_i156q5755pX4KZfa?dl=0 | | Mice, SIM, research organism | | 1,230 | 171,102 | 2,000 | | 2,460 | 641,599 | 4,000 | Cells, Tools and Techniques | | 12/27/2021 | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | | Cell division and cell death | Active | Video | | Two cells over a 2-hour period. The one on the bottom left goes through programmed cell death, also known as apoptosis. The one on the top right goes through cell division, also called mitosis. This video was captured using a confocal microscope. | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | 778,444 | | Alt text: A round cell on the bottom left breaks apart into small pieces while another cell on the top right splits into two cells. Permission email: HI Abbey, Thank you for checking back. I would be happy for you to use this image and video for the NIGMS gallery. I own the copyright to this material. The text you requested is below followed by a Dropbox link to the files. Cheers, Dylan Image: Two mouse fibroblast cells Preparation: DNA was labeled with DAPI and mitochondria were labeled by expressing a mitochondrial protein, cox8a. 3D image stacks were acquired with a structured illumination microscope and a 3D color projection was created by combining both channels into a single stack and using the Temporal Color-code plugin in Fiji (Fiji Is Just ImageJ). Technique: Structured Illumination Microscopy (SIM) Video: DNA during cell death and cell division Specimen: DNA during cell death and cell division Preparation: This time-lapse shows two cells over a 2 hour period. The one on the bottom goes through programmed cell death and the one on the top goes through cell division. As such, the movie starts with two cells and, even though one dies, ends with two cells. Technique: Confocal https://www.dropbox.com/sh/deuy174kgfyqndu/AADeRA6j_i156q5755pX4KZfa?dl=0 | | microscopy | | | | | | | | | Cells, Tools and Techniques | | 12/27/2021 | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | | Yeast cells entering mitosis | Active | Photograph | | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | 611 | 1,208,101 | 659 | Alt text: Oblong yeast cells with bands of green and magenta dots around their middles. Wild-type fission yeast cells expressing the anillin-like protein Mid1 tagged with mNeonGreen and the F-BAR protein Cdc15 tagged with mCherry. Permission Email: Hi Abbey, My name is Alaina and I am a researcher in Dr. Kathy Gould’s laboratory at Vanderbilt. I have provided 6 images and 2 movies along with the captions, titles and credits in a separate word document. I am linking to a dropbox file as it is a lot of files but I would be happy to send you the files in whatever way you need. Please let me know if you require any additional information or if you have any issues with the files. I can also confirm that all these images are free of copyright restrictions. link: https://www.dropbox.com/sh/50svqbrl7h9dcjp/AADal6XohuYY9jjahXgvG99ja?dl=0 Thank you! Alaina Willet, Ph.D. | Research Instructor | Dr. Kathy Gould's Lab Vanderbilt University | Cell & Developmental Biology 1161 21st Ave S, MCN B2309 | Nashville, TN 37232 | | Research organisms | | 305 | 19,534 | 330 | | 305 | 19,534 | 330 | Cells, Tools and Techniques | | 1/13/2022 | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | | Yeast cells with nuclei and contractile rings | Active | Photograph | | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | 960 | 2,764,954 | 960 | Alt text: Oblong yeast cells with green circles inside them. Some cells contain two green circles separated by a magenta line. Fission yeast cells expressing the anillin-like Mid1 lacking an amphipathic helix and tagged with mNeonGreen and the myosin regulatory light chain protein Rlc1 tagged with mCherry. Permission email: Hi Abbey, My name is Alaina and I am a researcher in Dr. Kathy Gould’s laboratory at Vanderbilt. I have provided 6 images and 2 movies along with the captions, titles and credits in a separate word document. I am linking to a dropbox file as it is a lot of files but I would be happy to send you the files in whatever way you need. Please let me know if you require any additional information or if you have any issues with the files. I can also confirm that all these images are free of copyright restrictions. link: https://www.dropbox.com/sh/50svqbrl7h9dcjp/AADal6XohuYY9jjahXgvG99ja?dl=0 Thank you! Alaina Willet, Ph.D. | Research Instructor | Dr. Kathy Gould's Lab Vanderbilt University | Cell & Developmental Biology 1161 21st Ave S, MCN B2309 | Nashville, TN 37232 | | Nucleus, mitosis, research organisms | | 480 | 36,121 | 480 | | 480 | 36,121 | 480 | Cells, Tools and Techniques | | 1/13/2022 | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | | Yeast cells with endocytic actin patches | Active | Photograph | | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | 960 | 2,765,018 | 960 | Alt text: Oblong yeast cells with green dots at their ends. A few cells have green dots in their middles as well, suggesting they are preparing to divide. Wild-type cells expressing the type I myosin Myo1 tagged with mNeonGreen, spindle pole body protein Sid4 tagged with RFP, and the F-BAR protein Cdc15 tagged with mCherry. Permission email: Hi Abbey, My name is Alaina and I am a researcher in Dr. Kathy Gould’s laboratory at Vanderbilt. I have provided 6 images and 2 movies along with the captions, titles and credits in a separate word document. I am linking to a dropbox file as it is a lot of files but I would be happy to send you the files in whatever way you need. Please let me know if you require any additional information or if you have any issues with the files. I can also confirm that all these images are free of copyright restrictions. link: https://www.dropbox.com/sh/50svqbrl7h9dcjp/AADal6XohuYY9jjahXgvG99ja?dl=0 Thank you! Alaina Willet, Ph.D. | Research Instructor | Dr. Kathy Gould's Lab Vanderbilt University | Cell & Developmental Biology 1161 21st Ave S, MCN B2309 | Nashville, TN 37232 | | Mitosis, research organisms | | 480 | 31,222 | 480 | | 480 | 31,222 | 480 | Cells, Tools and Techniques | | 1/13/2022 | Grant: R35GM131799 | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | | Yeast cells with Fimbrin Fim1 | Active | Photograph | | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | 960 | 117,646 | 960 | Alt text: Oblong cells with magenta dots concentrated at their ends and, in some cases, their middles. Fission yeast cells expressing the type I myosin Myo1 tagged with mNeonGreen and Fimbrin Fim1 tagged with mCherry. In this genetic background, Myo1 localizes along the plasma membrane. Permission email: Hi Abbey, My name is Alaina and I am a researcher in Dr. Kathy Gould’s laboratory at Vanderbilt. I have provided 6 images and 2 movies along with the captions, titles and credits in a separate word document. I am linking to a dropbox file as it is a lot of files but I would be happy to send you the files in whatever way you need. Please let me know if you require any additional information or if you have any issues with the files. I can also confirm that all these images are free of copyright restrictions. link: https://www.dropbox.com/sh/50svqbrl7h9dcjp/AADal6XohuYY9jjahXgvG99ja?dl=0 Thank you! Alaina Willet, Ph.D. | Research Instructor | Dr. Kathy Gould's Lab Vanderbilt University | Cell & Developmental Biology 1161 21st Ave S, MCN B2309 | Nashville, TN 37232 | | Mitosis, research organisms, purple, cross-linking | | 480 | 28,095 | 480 | | 480 | 28,095 | 480 | Cells, Tools and Techniques | | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | | Dividing yeast cells with nuclear envelopes and spindle pole bodies | Active | Video | | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | 3,001,176 | | | Alt text: Oblong yeast cells, each containing a green circle with a magenta dot touching it. Over time, second magenta dots form, and the green circles divide, becoming parts of new cells. Time-lapse imaging of wild-type fission yeast cells expressing the nuclear envelope marker Cut11 tagged with mNeonGreen and the spindle pole body protein Ppc89 tagged with mCherry. Images were taken every 10 minutes, and each second of the video contains five images. Permission email: Hi Abbey, My name is Alaina and I am a researcher in Dr. Kathy Gould’s laboratory at Vanderbilt. I have provided 6 images and 2 movies along with the captions, titles and credits in a separate word document. I am linking to a dropbox file as it is a lot of files but I would be happy to send you the files in whatever way you need. Please let me know if you require any additional information or if you have any issues with the files. I can also confirm that all these images are free of copyright restrictions. link: https://www.dropbox.com/sh/50svqbrl7h9dcjp/AADal6XohuYY9jjahXgvG99ja?dl=0 Thank you! Alaina Willet, Ph.D. | Research Instructor | Dr. Kathy Gould's Lab Vanderbilt University | Cell & Developmental Biology 1161 21st Ave S, MCN B2309 | Nashville, TN 37232 | Nucleus, nuclei, mitosis, research organisms | | | | | | | | | Cells, Tools and Techniques | | 1/13/2022 | Grant: R35GM131799 | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | | Dividing yeast cells with spindle pole bodies and contractile rings | Active | Video | | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | 779,737 | | Alt text: Oblong yeast cells, each with two glowing dots inside. One dot moves toward each end of the cell. Bands form in the middle of the cells and constrict until the cells divide. Time-lapse imaging of wild-type fission yeast cells expressing the myosin regulatory light chain Rlc1 tagged with mNeonGreen and the spindle pole body protein Sid4 tagged with mNeonGreen. These proteins are used to mark key stages of cytokinesis including contractile ring formation, maturation, and constriction. Images were taken every 2 minutes, and each second of the video contains seven images. mNeonGreen intensity is highlighted with the Fire lookup table using FIJI/imageJ. Permission email: Hi Abbey, My name is Alaina and I am a researcher in Dr. Kathy Gould’s laboratory at Vanderbilt. I have provided 6 images and 2 movies along with the captions, titles and credits in a separate word document. I am linking to a dropbox file as it is a lot of files but I would be happy to send you the files in whatever way you need. Please let me know if you require any additional information or if you have any issues with the files. I can also confirm that all these images are free of copyright restrictions. link: https://www.dropbox.com/sh/50svqbrl7h9dcjp/AADal6XohuYY9jjahXgvG99ja?dl=0 Thank you! Alaina Willet, Ph.D. | Research Instructor | Dr. Kathy Gould's Lab Vanderbilt University | Cell & Developmental Biology 1161 21st Ave S, MCN B2309 | Nashville, TN 37232 | | Mitosis, research organisms | | | | | | | | | Cells, Tools and Techniques | | 1/13/2022 | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | | Yeast cells with accumulated cell wall material | Active | Photograph | | | | Maya Igarashi, Kathy Gould’s lab, Vanderbilt University. | 661 | 250,132 | 942 | Alt text: Oblong yeast cells. Some of them have one blue end, and others have blue stripes across their middles. Cells stained with calcoflour (cyan) and TRITC-lectin (magenta). In this strain background (css1-3), cells abnormally accumulate cell wall material at the cell tips and septum. Permission email: Hi Abbey, My name is Alaina and I am a researcher in Dr. Kathy Gould’s laboratory at Vanderbilt. I have provided 6 images and 2 movies along with the captions, titles and credits in a separate word document. I am linking to a dropbox file as it is a lot of files but I would be happy to send you the files in whatever way you need. Please let me know if you require any additional information or if you have any issues with the files. I can also confirm that all these images are free of copyright restrictions. link: https://www.dropbox.com/sh/50svqbrl7h9dcjp/AADal6XohuYY9jjahXgvG99ja?dl=0 Thank you! Alaina Willet, Ph.D. | Research Instructor | Dr. Kathy Gould's Lab Vanderbilt University | Cell & Developmental Biology 1161 21st Ave S, MCN B2309 | Nashville, TN 37232 | | Research organisms, purple, pink, mitosis
| | 330 | 12,011 | 470 | | 330 | 12,011 | 470 | Cells, Tools and Techniques | | | Grant: R35GM131799 | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | | Yeast cells with nuclear envelopes and tubulin | Active | Photograph | Alt text: Oblong yeast cells, each containing a magenta sphere and several light-blue lines. | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | 614 | 1,127,522 | 612 | Grant: R35GM131799 Wild-type fission yeast cells expressing the tubulin subunit Atb2 tagged with GFP (cyan) and the nuclear envelope protein Cut11 tagged with mCherry (magenta). Permission email: Hi Abbey, My name is Alaina and I am a researcher in Dr. Kathy Gould’s laboratory at Vanderbilt. I have provided 6 images and 2 movies along with the captions, titles and credits in a separate word document. I am linking to a dropbox file as it is a lot of files but I would be happy to send you the files in whatever way you need. Please let me know if you require any additional information or if you have any issues with the files. I can also confirm that all these images are free of copyright restrictions. link: https://www.dropbox.com/sh/50svqbrl7h9dcjp/AADal6XohuYY9jjahXgvG99ja?dl=0 Thank you! Alaina Willet, Ph.D. | Research Instructor | Dr. Kathy Gould's Lab Vanderbilt University | Cell & Developmental Biology 1161 21st Ave S, MCN B2309 | Nashville, TN 37232 | | Nuclei, research organisms, pink, mitosis | | 307 | 18,611 | 306 | | 307 | 18,611 | 306 | Cells, Tools and Techniques | | | | Alaina Willet, Kathy Gould’s lab, Vanderbilt University. | | | Phagosome in macrophage cell | Active | Video | | A sensor particle being engulfed by a macrophage—an immune cell—and encapsuled in a compartment called a phagosome. The phagosome then fuses with lysosomes—another type of compartment. The left video shows snowman-shaped sensor particles with fluorescent green nanoparticle “heads” and “bodies” colored red by Förster Resonance Energy Transfer (FRET)-donor fluorophores. The middle video visualizes light blue FRET signals that are only generated when the “snowman” sensor—the FRET-donor—fuses with the lysosomes, which are loaded with FRET-acceptors. The right video combines the other two. The videos were captured using epi-fluorescence microscopy. <Br><Br> More details can be found in the paper <a href=" https://www.biorxiv.org/content/10.1101/2021.04.04.438376v1">“Transport motility of phagosomes on actin and microtubules regulates timing and kinetics of their maturation” </a> by Yu et al. | | Yanqi Yu, Yan Yu Group, Indiana University, Bloomington. | | 1,492,941 | | Alt text: On the left, several snowman-shaped particles are shown, and one in the middle moves. In the middle, many round light-blue shapes move amid a light-blue web. On the right, a snowman-shaped particle is engulfed by a light-blue sphere that fuses with smaller spheres, becoming brighter blue. Simultaneous imaging of phagosome rotation and phagosome-lysosome fusion in macrophage cells was achieved by using Förster Resonance Energy Transfer (FRET)-based particle sensors. As shown in the video on the left, each particle sensor is a “snowman”-shaped; the “snowman” body is a 1 m particle coated with FRET-donor fluorophore (red color), and the “snowman” head is a small fluorescent nanoparticle (green color) that is covalently attached. After the “snowman” shaped particle sensor was phagocytosed by a RAW 264.7 macrophage, it was encapsulated into a phagosome. As shown in the video in the middle, fusion between the sensor-containing phagosome and lysosomes loaded with FRET-acceptors generate real-time FRET signals (cyan, middle), which report the kinetics of phagosome-lysosome fusion. A merged video (on the right) shows both the particle sensor and FRET signals. More details can be found in Yu et al. bioRxiv 2021.04.04.438376; doi: https://doi.org/10.1101/2021.04.04.438376. Dear Abbey, Thank you for reaching out. We will be delighted to provide some videos for the gallery. Here is the link to a folder containing three videos and the corresponding word document with the necessary information. Yan Yu, Ph.D. Associate Professor Chemistry Department Indiana University 800 E. Kirkwood Ave Bloomington, IN 47401 Phone: (812) 855-0593 https://yu.lab.indiana.edu/ | | Immune system | | | | | | | | | Cells, Tools and Techniques | | | | Yan Yu, Indiana University, Bloomington. | | | Magnetic Janus particle activating a T cell | Active | Video | | A Janus particle being used to activate a T cell, a type of immune cell. A Janus particle is a specialized microparticle with different physical properties on its surface, and this one is coated with nickel on one hemisphere and anti-CD3 antibodies (light blue) on the other. The nickel enables the Janus particle to be moved using a magnet, and the antibodies bind to the T cell and activate it. The T cell in this video was loaded with calcium-sensitive dye to visualize calcium influx, which indicates activation. The intensity of calcium influx was color coded so that warmer color indicates higher intensity. Being able to control Janus particles with simple magnets is a step toward controlling individual cells’ activities without complex magnetic devices.<Br><Br> More details can be found in the <em> Angewandte Chemie </em> paper <a href=" https://onlinelibrary.wiley.com/doi/full/10.1002/anie.201601211">“Remote control of T cell activation using magnetic Janus particles”</a> by Lee et al. This video was captured using epi-fluorescence microscopy. <Br><Br>Related to video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6801">6801</a>. | | Kwahun Lee, Yan Yu Group, Indiana University, Bloomington. | | 26,051,412 | | Alt text: A sphere with one half colored light blue moves beside a T cell with its light-blue side facing away from the cell. The sphere then rotates so that its light-blue side touches the cell and activates it. The T-cell changes colors from light blue to bright red, then fluctuates between yellow and orange for the rest of the movie. A Janus particle was coated with a thin film of nickel on one hemisphere and functionalized with anti-CD3 (fluorescent) on the other hemisphere. The Janus particle can rotate and move translationally under a rotating magnetic field. When the Janus particle was rotated, its orientation can be used as a switch to turn on the activation of T cells when its anti-CD3 coated hemisphere was rotated to bind to the T cell. The T cell was loaded with the calcium-sensitive dye Fluo-4 to visualize calcium influx, which indicates T cell activation. The intensity of calcium influx was colored coded with warmer color indicating higher intensity. More details can be found in Lee et al. Angew. Chem. Int. Ed. 2016, 55, 7384-7. Dear Abbey, Thank you for reaching out. We will be delighted to provide some videos for the gallery. Here is the link to a folder containing three videos and the corresponding word document with the necessary information. Yan Yu, Ph.D. Associate Professor Chemistry Department Indiana University 800 E. Kirkwood Ave Bloomington, IN 47401 Phone: (812) 855-0593 https://yu.lab.indiana.edu/ | | Immune system | | | | | | | | | Cells, Tools and Techniques | | | | Yan Yu, Indiana University, Bloomington. | | | “Two-faced” Janus particle activating a macrophage | Active | Video | | A macrophage—a type of immune cell that engulfs invaders—“eats” and is activated by a “two-faced” Janus particle. The particle is called “two-faced” because each of its two hemispheres is coated with a different type of molecule, shown here in red and cyan. During macrophage activation, a transcription factor tagged with a green fluorescence protein (NF-κB) gradually moves from the cell’s cytoplasm into its nucleus and causes DNA transcription. The distribution of molecules on “two-faced” Janus particles can be altered to control the activation of immune cells. Details on this “geometric manipulation” strategy can be found in the <em> Proceedings of the National Academy of Sciences</em> paper <a href=" https://www.pnas.org/content/116/50/25106.long">"Geometrical reorganization of Dectin-1 and TLR2 on single phagosomes alters their synergistic immune signaling" </a> by Li et al. and the <em> Scientific Reports</em> paper<a href=" https://www.nature.com/articles/s41598-021-92910-9"> "Spatial organization of FcγR and TLR2/1 on phagosome membranes differentially regulates their synergistic and inhibitory receptor crosstalk"</a> by Li et al. This video was captured using epi-fluorescence microscopy. <Br><Br>Related to video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6800">6800</a>. | | Wenqian Li, Yan Yu Group, Indiana University, Bloomington. | | 20,705,687 | | Alt text: A cell engulfs a two-colored sphere. Then, small particles are seen collecting in the cell’s nucleus. A RAW264.7 macrophage cell internalized and was activated by a “two-faced” Janus particle that was coated with ligand for Fc receptors on one hemisphere and ligand for Toll-like receptor 2 on the other hemisphere. During cell activation, the transcription factor RelA with a green fluorescence protein (GFP) tag gradually translocates from cell cytoplasm into the nucleus and leads to subsequent DNA transcription. The ligand distribution pattern on the “two-faced” Janus particles can be altered to control the activation of immune cells. Details on this “geometric manipulation” strategy can be found in Li et al. Proc. Natl. Acad. Sci. USA. 2019, 116, 25106-114; and Li et al. Sci Rep 2021, 11 (1), 13430. Dear Abbey, Thank you for reaching out. We will be delighted to provide some videos for the gallery. Here is the link to a folder containing three videos and the corresponding word document with the necessary information. Yan Yu, Ph.D. Associate Professor Chemistry Department Indiana University 800 E. Kirkwood Ave Bloomington, IN 47401 Phone: (812) 855-0593 https://yu.lab.indiana.edu/ | | White blood cell, immune system, NF-kappaB, NF-KB, TLR-2 | | | | | | | | | Cells, Tools and Techniques | | | | Yan Yu, Indiana University, Bloomington. | | | Antibiotic-surviving bacteria | Active | Photograph | Alt text: On the left, a petri dish with many round colonies of bacteria around its perimeter. On the right, a petri dish with bioluminescent bacterial colonies with bright red centers and green to blue perimeters. | Colonies of bacteria growing despite high concentrations of antibiotics. These colonies are visible both by eye, as seen on the left, and by bioluminescence imaging, as seen on the right. The bioluminescent color indicates the metabolic activity of these bacteria, with their red centers indicating high metabolism. <Br><Br> More information about the research that produced this image can be found in the <em> Antimicrobial Agents and Chemotherapy</em> paper <a href=" https://journals.asm.org/doi/full/10.1128/AAC.00623-20">“Novel aminoglycoside-tolerant phoenix colony variants of <em>Pseudomonas aeruginosa</em>”</a> by Sindeldecker et al. | | Devin Sindeldecker and Paul Stoodley, The Ohio State University. | 2,250 | 7,786,006 | 4,000 | Colonies of bacteria emerge and are able to grow despite the presence of high concentrations of antibiotics. These colonies are visible both by bioluminescence imaging using an In Vitro Imaging System (IVIS) as well as by eye as demonstrated here. The IVIS was used primarily to allow us to see any changes in the metabolism of the colonies. Since the strain that we used (P. aeruginosa Xen41) is bioluminescent due to a metabolically driven Lux cassette, it allowed us to see whether or not the bacteria were still metabolically active during antibiotic exposure. The color gradient also was able to give us a general idea about the level of metabolic activity present (high vs low). The cells did not need to be labeled due to the Lux cassette present in their genome. The colonies that emerge represent four different phenotypes. We found classically resistant colonies, persister cell colonies (enter a state of dormancy to allow antibiotic survival), and two other variants for which the mechanism of survival is still unclear but under investigation. The two other variants are viable but non-culturable colonies (able to grow in the original environment but unable to be cultured otherwise) and pheonix colonies which grow in this high concentration of antibiotics but once cultured return to a wild-type level of antibiotic susceptibility. Dear Abbey, I would be happy to share. We do have some really nice movies of Staph. aureus aggregating in synovial fluid as well as electron micrographs of staph. on orthopaedic surfaces. It is unpublished but we are in the process of submitting. Paul. Paul Stoodley, PhD. Director, Campus Microscopy and Imaging Facility (CMIF) Professor, Departments of Microbial Infection and Immunity and Orthopedics Infectious Diseases Institute, The Ohio State University, 716 Biomedical Research Tower, 460 West 12th Avenue, Columbus OH 43210.
| | Antibiotic resistance, antibiotic resistant, bacterium | | 562 | 40,935 | 999 | | 1,125 | 194,848 | 2,000 | Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | | | Paul Stoodley, The Ohio State University. | | | Staphylococcus aureus aggregates on microstructured titanium surface | Active | Photograph | | Groups of <em>Staphylococcus aureus</em> bacteria (blue) attached to a microstructured titanium surface (green) that mimics an orthopedic implant used in joint replacement. The attachment of pre-formed groups of bacteria may lead to infections because the groups can tolerate antibiotics and evade the immune system. This image was captured using a scanning electron microscope. <Br><Br>More information on the research that produced this image can be found in the <em>Antibiotics</em> paper<a href=" https://www.mdpi.com/2079-6382/10/8/889"> "Free-floating aggregate and single-cell-initiated biofilms of <em>Staphylococcus aureus</em>" </a>by Gupta et al. <Br><Br> Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6804">6804</a> and video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6805">6805</a>. | | Tripti Thapa Gupta, Khushi Patel, and Paul Stoodley, The Ohio State University; Alex Horswill, University of Colorado School of Medicine. | 943 | 6,329,964 | 1,024 | Alt text: Large clumps of spherical bacteria on a rough surface. Instrument used: Quanta 200 Scanning Electron Microscope Dear Abbey, I would be happy to share. We do have some really nice movies of Staph. aureus aggregating in synovial fluid as well as electron micrographs of staph. on orthopaedic surfaces. It is unpublished but we are in the process of submitting. Paul. Paul Stoodley, PhD. Director, Campus Microscopy and Imaging Facility (CMIF) Professor, Departments of Microbial Infection and Immunity and Orthopedics Infectious Diseases Institute, The Ohio State University, 716 Biomedical Research Tower, 460 West 12th Avenue, Columbus OH 43210.
| | Electron microscopy, SEM, bacterium, blue, green | | 235 | 14,322 | 256 | | 471 | 66,125 | 512 | Cells, Injury and Illness, Tools and Techniques | | | | Paul Stoodley, The Ohio State University. | | | Staphylococcus aureus in the porous coating of a femoral hip stem | Active | Photograph | Spherical bacteria on a rough surface. | <em>Staphylococcus aureus</em> bacteria (blue) on the porous coating of a femoral hip stem used in hip replacement surgery. The relatively rough surface of an implant is a favorable environment for bacteria to attach and grow. This can lead to the development of biofilms, which can cause infections. The researchers who took this image are working to understand where biofilms are likely to develop. This knowledge could support the prevention and treatment of infections. A scanning electron microscope was used to capture this image. <Br><Br>More information on the research that produced this image can be found in the <em>Antibiotics</em> paper<a href=" https://www.mdpi.com/2079-6382/10/8/889"> "Free-floating aggregate and single-cell-initiated biofilms of <em>Staphylococcus aureus</em>" </a>by Gupta et al. <Br><Br>Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6803">6803</a> and video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6805">6805</a>. | | Niraj Gupta, Khushi Patel, Kelly Moore, and Paul Stoodley, The Ohio State University; Alex Horswill, University of Colorado School of Medicine. | 1,094 | 10,281,020 | 1,536 | Alt text: Spherical bacteria on a rough surface. Instrument used: Apreo FEG SEM, Thermo Scientific. Dear Abbey, I would be happy to share. We do have some really nice movies of Staph. aureus aggregating in synovial fluid as well as electron micrographs of staph. on orthopaedic surfaces. It is unpublished but we are in the process of submitting. Paul. Paul Stoodley, PhD. Director, Campus Microscopy and Imaging Facility (CMIF) Professor, Departments of Microbial Infection and Immunity and Orthopedics Infectious Diseases Institute, The Ohio State University, 716 Biomedical Research Tower, 460 West 12th Avenue, Columbus OH 43210.
| | Electron microscopy, SEM, bacterium, pink, blue | | 273 | 17,761 | 384 | | 547 | 74,093 | 768 | Cells, Injury and Illness, Tools and Techniques | | | | Paul Stoodley, The Ohio State University. | | | Staphylococcus aureus aggregating upon contact with synovial fluid | Active | Video | | <em>Staphylococcus aureus</em> bacteria (green) grouping together upon contact with synovial fluid—a viscous substance found in joints. The formation of groups can help protect the bacteria from immune system defenses and from antibiotics, increasing the likelihood of an infection. This video is a 1-hour time lapse and was captured using a confocal laser scanning microscope. <Br><Br> More information about the research that produced this video can be found in the <em>Journal of Bacteriology</em> paper <a href=" https://journals.asm.org/doi/10.1128/jb.00451-22">"<em>In Vitro</em> Staphylococcal Aggregate Morphology and Protection from Antibiotics Are Dependent on Distinct Mechanisms Arising from Postsurgical Joint Components and Fluid Motion"</a> by Staats et al. <Br><Br> Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6803">6803</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6804">6804</a>. | | Amelia Staats and Paul Stoodley, The Ohio State University; Alex Horswill, University of Colorado School of Medicine. | | 25,443,046 | | Alt text: Spherical bacteria joining together to form larger and larger groups. Instrument used: Fluoview Fv10i Laser Scanning Microscope, Olympus. Technique: Fluorescence Time-lapse Imaging used for image collection; 1 hour of imaging with the 60x objective. Dear Abbey, I would be happy to share. We do have some really nice movies of Staph. aureus aggregating in synovial fluid as well as electron micrographs of staph. on orthopaedic surfaces. It is unpublished but we are in the process of submitting. Paul. Paul Stoodley, PhD. Director, Campus Microscopy and Imaging Facility (CMIF) Professor, Departments of Microbial Infection and Immunity and Orthopedics Infectious Diseases Institute, The Ohio State University, 716 Biomedical Research Tower, 460 West 12th Avenue, Columbus OH 43210.
| | bacterium | | | | | | | | | Cells, Injury and Illness, Tools and Techniques | | | | Paul Stoodley, The Ohio State University. | | | Wild-type and mutant fruit fly ovaries | Active | Photograph | | The two large, central, round shapes are ovaries from a typical fruit fly (<em>Drosophila melanogaster</em>). The small butterfly-like structures surrounding them are fruit fly ovaries where researchers suppressed the expression of a gene that controls microtubule polymerization and is necessary for normal development. This image was captured using a confocal laser scanning microscope. <Br><Br> Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6807">6807</a>. | | Wen Lu and Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | 2,481 | 11,932,920 | 2,481 | Alt text: Two large, round shapes that are touching in the middle and are surrounded by smaller butterfly-like structures. Drosophila melanogaster (fruit fly) wild-type ovaries (big ovaries in the center) and mini spindles (msps) mutant ovaries (small ovaries on the periphery). Mini spindles encodes a Drosophila homolog of XMAP215 and controls microtubule polymerization. Knockdown of msps by a germline-specific RNAi leads to defects of ovary development. Actin filaments were labeled with rhodamine-conjugated phalloidin (red), and DNA was labeled with DAPI (blue). The images were acquired on a Nikon A1plus scanning confocal microscope with a GaAsP detector and a 20X 0.75 N.A. lens using Galvano scanning controlled by Nikon Elements software and assembled by Adobe Illustrator. Dear Abbey, We have some images for you. Would you like to have a look at them? How do you want me to share them with you (TIFF files are too big for email). Best, Vladimir Gelfand
| | Ovary, research organisms | | 620 | 24,362 | 620 | | 1,240 | 121,463 | 1,240 | Cells, Genes, Tools and Techniques | | | | Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | | | Fruit fly ovaries | Active | Photograph | | | | Wen Lu and Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | 4,506 | 6,637,955 | 4,506 | Alt text: A butterfly-shaped structure with light-blue lines throughout and groups of magenta dots toward the edges. Researcher-Provided Description: Drosophila melanogaster (fruit fly) wild-type ovaries in which actin filaments were labeled with rhodamine-conjugated phalloidin (cyan) and DNA was labeled with DAPI (magenta). The image was acquired on a Nikon A1plus scanning confocal microscope with a GaAsP detector and a 20X 0.75 N.A. lens using Galvano scanning controlled by Nikon Elements software. Dear Abbey, We have some images for you. Would you like to have a look at them? How do you want me to share them with you (TIFF files are too big for email). Best, Vladimir Gelfand
| | Ovary, research organisms | | 1,126 | 102,231 | 1,126 | | 2,253 | 514,567 | 2,253 | Cells, Genes, Tools and Techniques | | | | Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | | | Fruit fly larvae brains showing tubulin | Active | Photograph | | Two fruit fly (<em>Drosophila melanogaster</em>) larvae brains with neurons expressing fluorescently tagged tubulin protein. Tubulin makes up strong, hollow fibers called microtubules that play important roles in neuron growth and migration during brain development. This image was captured using confocal microscopy, and the color indicates the position of the neurons within the brain. | | Wen Lu and Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | 1,675 | 16,723,354 | 3,328 | Alt text: Two heart-shaped fruit fly brains with many fluorescent threads running throughout them. Researcher-Provided Description: Drosophila melanogaster (fruit fly) third instar larval brains expressing fluorescently tagged tubulin in neurons. Spectrum colors were artificially applied to Z-stack images according to the position within the brain (red, dorsal side; purple, ventral side). The image was acquired on a Nikon Eclipse U2000 inverted stand with a Yokogawa CSU10 spinning disk confocal head and a 40X 1.30-N.A. lens, using Evolve EMCCD, controlled by Nikon Elements software. Dear Abbey, We have some images for you. Would you like to have a look at them? How do you want me to share them with you (TIFF files are too big for email). Best, Vladimir Gelfand
| | Nerve cells, research organisms, confocal laser scanning microscope | | 418 | 32,479 | 832 | | 837 | 179,003 | 1,664 | Cells, Tools and Techniques | | | | Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | | | Fruit fly egg ooplasmic streaming | Active | Photograph | | Two fruit fly (<em>Drosophila melanogaster</em>) egg cells, one on each side of the central black line. The colorful swirls show the circular movement of cytoplasm—called ooplasmic streaming—that occurs in late egg cell development in wild-type (right) and mutant (left) oocytes. This image was captured using confocal microscopy. <Br><Br> More information on the research that produced this image can be found in the <em>Journal of Cell Biology</em> paper <a href=" https://rupress.org/jcb/article/217/10/3497/120275/Ooplasmic-flow-cooperates-with-transport-and">“Ooplasmic flow cooperates with transport and anchorage in <em>Drosophila</em> oocyte posterior determination”</a> by Lu et al. | | Wen Lu, Margot Lakonishok, and Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | 1,704 | 13,189,372 | 2,580 | Alt text: Two half-ovals separated by a black line. The one on the left contains wavelike bands of color, while the one on the right has spiraling bands. Researcher-Provided Description: During late oogenesis, Drosophila oocyte cytoplasm undergoes circular movement called ooplasmic streaming. Posterior determinants containing the fluorescently labeled marker Staufen move with the cytoplasmic flow in different patterns in wild-type (right) and myosin-V mutant (left) oocytes. Spectrum-colored tracks represent the movement of Staufen-containing particles within a 10-minute period of time. The images were acquired on a Nikon Eclipse U2000 inverted stand with a Yokogawa CSU10 spinning disk confocal head and a 40X 1.30-N.A. lens, using Evolve EMCCD, controlled by Nikon Elements software. Dear Abbey, We have some images for you. Would you like to have a look at them? How do you want me to share them with you (TIFF files are too big for email). Best, Vladimir Gelfand
| | Oocytes, oogenesis, research organisms | | 426 | 32,649 | 645 | | 852 | 158,425 | 1,290 | Cells, Tools and Techniques | | | | Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | | | Fruit fly ovarioles | Active | Photograph | | Three fruit fly (<em>Drosophila melanogaster</em>) ovarioles (yellow, blue, and magenta) with egg cells visible inside them. Ovarioles are tubes in the reproductive systems of female insects. Egg cells form at one end of an ovariole and complete their development as they reach the other end, as shown in the yellow wild-type ovariole. This process requires an important protein that is missing in the blue and magenta ovarioles. This image was created using confocal microscopy. <Br><Br> More information on the research that produced this image can be found in the <em> Current Biology</em> paper <a href=" https://www.cell.com/current-biology/fulltext/S0960-9822(21)00669-2?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982221006692%3Fshowall%3Dtrue">“Gatekeeper function for Short stop at the ring canals of the <em>Drosophila</em> ovary”</a> by Lu et al. | | Wen Lu and Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | 2,416 | 18,540,796 | 2,558 | Alt text: Three stacks of ovals: one yellow, one blue, and one purple. Inside the ovals are smaller round shapes. In the background are two large ovals filled with white strings and black spots. Researcher-Provided Description: Drosophila melanogaster (fruit fly) oocyte growth requires an actin-microtubule cross-linker, short stop (shot). The color images are wild-type (yellow) and two shot-RNAi lines (cyan and magenta) in which actin filaments (labeled with rhodamine-conjugated phalloidin) were used to outline the cell shape of oocytes. The black-and-white image shows microtubules and actin filaments in a shot-RNAi background. The color images were acquired on a Nikon A1plus scanning confocal microscope with a GaAsP detector and a 20X 0.75 N.A. lens using Galvano scanning, and the black-and-white image was acquired on a Nikon W1 spinning disk confocal microscope (Yokogawa CSU with pinhole size 50 µm) with a Photometrics Prime 95B sCMOS Camera and a 40X 1.25 N.A. silicone oil lens, controlled by Nikon Elements software. Dear Abbey, We have some images for you. Would you like to have a look at them? How do you want me to share them with you (TIFF files are too big for email). Best, Vladimir Gelfand
| | Oocytes, oogenesis, research organisms | | 604 | 66,168 | 639 | | 1,208 | 296,692 | 1,279 | Cells, Genes, Tools and Techniques | | | | Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | | | Fruit fly egg chamber | Active | Photograph | Alt text: An oblong shape with green and red fibers throughout. Researcher-Provided Description: A Drosophila melanogaster (fruit fly) wild-type egg chamber in which microtubules were labeled with a GFP-tagged microtubule-associated protein (Patronin, green) and actin filaments were labeled with rhodamine-conjugated phalloidin (red). The image was acquired on a Nikon W1 spinning disk confocal microscope (Yokogawa CSU with pinhole size 50 µm) with a Photometrics Prime 95B sCMOS Camera and a 40X 1.25 N.A. silicone oil lens, controlled by Nikon Elements software. Dear Abbey, We have some images for you. Would you like to have a look at them? How do you want me to share them with you (TIFF files are too big for email). Best, Vladimir Gelfand
| | | Wen Lu, Margot Lakonishok, and Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | 1,287 | 4,969,325 | 1,287 | | | Oocytes, research organisms | | 322 | 11,323 | 322 | | 644 | 59,110 | 644 | Cells, Tools and Techniques | | | | Vladimir I. Gelfand, Feinberg School of Medicine, Northwestern University. | | | Himastatin | Active | Illustration | | | | Mohammad Movassaghi, Massachusetts Institute of Technology. | 652 | 82,532 | 998 | Alt Text: A ball-and-stick model of an oblong molecule. <Br><Br> Description from Researcher: A molecular representation of the molecule. <Br><Br> Dear Jiong, I am delighted to provide graphics/movies and I will be happy to edit them as needed to optimize their utility for the Communications and Public Liaisons team. Best wishes, Mo
| | antibiotics, bacteria | | 326 | 13,137 | 499 | | 326 | 13,137 | 499 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | | | Mohammad Movassaghi, Massachusetts Institute of Technology. | | | Himastatin and bacteria | Active | Photograph | A ball-and-stick model of an oblong molecule overlaid on an image of long, narrow, brightly colored bacteria. | A model of the molecule himastatin overlaid on an image of <em>Bacillus subtilis bacteria</em>. Scientists first isolated himastatin from the bacterium <em>Streptomyces himastatinicus</em>, and the molecule shows antibiotic activity. The researchers who created this image developed a new, more concise way to synthesize himastatin so it can be studied more easily. They also tested the effects of himastatin and derivatives of the molecule on <em>B. subtilis</em>. <Br><Br> More information about the research that produced this image can be found in the <em>Science</em> paper <a href=" https://www.science.org/doi/10.1126/science.abm6509">“Total synthesis of himastatin”</a> by D’Angelo et al. <Br><Br> Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6848">6848</a> and video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6851">6851</a>. | | Mohammad Movassaghi, Massachusetts Institute of Technology. | 521 | 300,018 | 694 | From: Mohammad Movassaghi < movassag@mit.edu> Sent on: Monday, February 28, 2022 4:22:18 PM To: Yang, Jiong (NIH/NIGMS) [E] < jiong.yang@nih.gov> Subject: Re: 1 R35 GM141963-01 Dear Jiong, I am delighted to provide graphics/movies and I will be happy to edit them as needed to optimize their utility for the Communications and Public Liaisons team. Best wishes, Mo -- --- Mohammad Movassaghi, Ph.D. Professor of Chemistry Massachusetts Institute of Technology Department of Chemistry 77 Massachusetts Avenue, 18-290 Cambridge, MA 02139 TEL: 617.253.3986 movassag@mit.edu http://web.mit.edu/movassag/www/index.htm | A picture of the molecule overplayed with an image related to MoA studies with B. subtilis. | antibiotics | | 260 | 15,119 | 346 | | 260 | 15,119 | 346 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | | | Mohammad Movassaghi, Massachusetts Institute of Technology. | | | Himastatin, 360-degree view | Active | Video | A ball-and-stick model of an oblong molecule rotating 360 degrees. | | | Mohammad Movassaghi, Massachusetts Institute of Technology. | | 47,339,255 | | From: Mohammad Movassaghi Sent on: Monday, February 28, 2022 4:22:18 PM To: Yang, Jiong (NIH/NIGMS) [E] Subject: Re: 1 R35 GM141963-01 Dear Jiong, I am delighted to provide graphics/movies and I will be happy to edit them as needed to optimize their utility for the Communications and Public Liaisons team. Best wishes, Mo -- --- Mohammad Movassaghi, Ph.D. Professor of Chemistry Massachusetts Institute of Technology Department of Chemistry 77 Massachusetts Avenue, 18-290 Cambridge, MA 02139 TEL: 617.253.3986 movassag@mit.edu http://web.mit.edu/movassag/www/index.htm | High resolution movie showing rotation about the vertical axis. | antibiotics, bacteria | | | | | | | | | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | | | Mohammad Movassaghi, Massachusetts Institute of Technology. | | | Neutrophil-like cells migrating in a microfluidic chip | Active | Video | Many cells moving through narrow channels. | Neutrophil-like cells (blue) in a microfluidic chip preferentially migrating toward LTB4 over fMLP. A neutrophil is a type of white blood cell that is part of the immune system and helps the body fight infection. Both LTB4 and fMLP are molecules involved in immune response. Microfluidic chips are small devices containing microscopic channels, and they are used in a range of applications, from basic research on cells to pathogen detection. The scale bar in this video is 500μm. | | Brittany Boribong and Caroline Jones, Virginia Technical Institute. | | 3,995,680 | | From: Jones, Caroline < Caroline.Jones@UTDallas.edu> Sent: Monday, March 28, 2022 11:20 AM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov> Subject: [EXTERNAL] Re: NIGMS Blog Request <Br><Br> Dear Abbey, That would be great to add my cell migration video to the NIGMS Image and Video Gallery. It isn’t under any copyright restrictions. I hope you have a nice week. Best regards, Caroline <Br><Br> Caroline N. Jones, Ph.D. Assistant Professor of Bioengineering Adjunct Assistant Professor of Surgery (UT Southwestern) University of Texas at Dallas Bioengineering and Sciences Building, Office 12.806 Richardson, TX 75080 Caroline.Jones@UTDallas.edu; 972.883.7279 | Neutrophils migrating in my microfluidic competitive chemotaxis-chip (μC3). This specific experiment is dHL-60 (neutrophil-like) cells stimulated with super-low dose LPS migrating toward fMLP and LTB4 within the μC3. dHL-60 cells (blue) stimulated with super low-dose LPS [1 ng/mL LPS] preferentially migrating toward LTB4 over fMLP (green) within the μC3. Scale Bar = 500μm. | Chemotaxis, microfluidics, cell migration, immunology, sepsis | | | | | | | | | Cells, Tools and Techniques | | | Used in the Biomedical Beat blog post, “Career Conversations: Q&A with Immunoengineer Caroline Jones.” | Caroline Jones, University of Texas at Dallas. | | | Chromatin in human fibroblast | Active | Photograph | An oval outlined in red that contains irregular clusters in a range of colors. | | | Melike Lakadamyali and Maria Aurelia Ricci, Perelman School of Medicine at the University of Pennsylvania. | 595 | 294,229 | 469 | From: Lakadamyali, Melike < melikel@pennmedicine.upenn.edu> Sent: Tuesday, February 1, 2022 12:50 PM To: Abbey Bigler < abigler@iqsolutions.com> Subject: RE: NIGMS Blog Request <Br><Br> Hi Abbey, Please find attached the images with a caption and the type of microscope that was used. Let me know if this is good or if you need something more. I give permission for the use of these images in the NIGMS image and video gallery and I confirm the materials are free of copyright restrictions. Best, Melike | Super-resolution image of chromatin in a human fibroblast cell. Chromatin nano-domain are pseudo color-coded. The image was captured using Stochastic Optical Reconstruction Microscopy (STORM). In the fibroblast/tenocyte images, it is the nucleus that is being shown. | | | 296 | 23,416 | 234 | | 296 | 23,416 | 234 | Cells, Tools and Techniques | | | | Melike Lakadamyali, Perelman School of Medicine at the University of Pennsylvania. | | | Chromatin in human fibroblast | Active | Photograph | An oval outlined in yellow that contains irregular clusters in a range of colors. | | | Melike Lakadamyali and Maria Aurelia Ricci, Perelman School of Medicine at the University of Pennsylvania. | 505 | 300,383 | 606 | From: Lakadamyali, Melike < melikel@pennmedicine.upenn.edu> Sent: Tuesday, February 1, 2022 12:50 PM To: Abbey Bigler < abigler@iqsolutions.com> Subject: RE: NIGMS Blog Request <Br><Br> Hi Abbey, Please find attached the images with a caption and the type of microscope that was used. Let me know if this is good or if you need something more. I give permission for the use of these images in the NIGMS image and video gallery and I confirm the materials are free of copyright restrictions. Best, Melike | Super-resolution image of chromatin in a human fibroblast cell. Chromatin nano-domain are pseudo color-coded. The image was captured using Stochastic Optical Reconstruction Microscopy (STORM). In the fibroblast/tenocyte images, it is the nucleus that is being shown. | | | 252 | 29,528 | 302 | | 252 | 29,528 | 302 | Cells, Tools and Techniques | | | | Melike Lakadamyali, Perelman School of Medicine at the University of Pennsylvania. | | | Lysosomes and microtubules | Active | Photograph | Blue threads interspersed with yellow spots. | | | Nitin Mohan, Melike Lakadamyali’s lab, Perelman School of Medicine at the University of Pennsylvania. | 1,616 | 2,365,298 | 1,150 | From: Lakadamyali, Melike < melikel@pennmedicine.upenn.edu> Sent: Tuesday, February 1, 2022 12:50 PM To: Abbey Bigler < abigler@iqsolutions.com> Subject: RE: NIGMS Blog Request <Br><Br> Hi Abbey, Please find attached the images with a caption and the type of microscope that was used. Let me know if this is good or if you need something more. I give permission for the use of these images in the NIGMS image and video gallery and I confirm the materials are free of copyright restrictions. Best, Melike | Dual-color super-resolution image of lysosomes (yellow) and detyrosinated microtubules (cyan). The image was captured using Stochastic Optical Reconstruction Microscopy (STORM) on a custom-built microscope. | Cytoskeleton | | 404 | 32,252 | 287 | | 808 | 130,157 | 575 | Cells, Tools and Techniques | | | | Melike Lakadamyali, Perelman School of Medicine at the University of Pennsylvania. | | | Microtubules in hippocampal neurons | Active | Photograph | A web of magenta threads. | | | Melina Gyparaki, Melike Lakadamyali’s lab, Perelman School of Medicine at the University of Pennsylvania. | 711 | 272,768 | 418 | From: Lakadamyali, Melike < melikel@pennmedicine.upenn.edu> Sent: Tuesday, February 1, 2022 12:50 PM To: Abbey Bigler < abigler@iqsolutions.com> Subject: RE: NIGMS Blog Request <Br><Br> Hi Abbey, Please find attached the images with a caption and the type of microscope that was used. Let me know if this is good or if you need something more. I give permission for the use of these images in the NIGMS image and video gallery and I confirm the materials are free of copyright restrictions. Best, Melike | Super-resolution image of microtubules (α-tubulin in magenta) in hippocampal neurons. The image was captured using Stochastic Optical Reconstruction Microscopy (STORM) on an Oxford Nanoimager (ONI) microscope. | Cytoskeleton, nerve cell | | 355 | 27,511 | 209 | | 355 | 27,511 | 209 | Cells, Tools and Techniques | | | | Melike Lakadamyali, Perelman School of Medicine at the University of Pennsylvania. | | | Microtubules in African green monkey cells | Active | Photograph | A web of threads in shades of purple, blue, green, and yellow. | | | Melike Lakadamyali and Stefan Balint, Perelman School of Medicine at the University of Pennsylvania. | 1,267 | 3,847,673 | 1,852 | From: Lakadamyali, Melike < melikel@pennmedicine.upenn.edu> Sent: Tuesday, February 1, 2022 12:50 PM To: Abbey Bigler < abigler@iqsolutions.com> Subject: RE: NIGMS Blog Request <Br><Br> Hi Abbey, Please find attached the images with a caption and the type of microscope that was used. Let me know if this is good or if you need something more. I give permission for the use of these images in the NIGMS image and video gallery and I confirm the materials are free of copyright restrictions. Best, Melike | 3D super-resolution image of microtubules in a BSC-1 cell. Image is color-coded according to the z-position of microtubules. Purple is closest to glass (and observer), and yellow is farthest from the glass (and observer). The image was captured using Stochastic Optical Reconstruction Microscopy (STORM) on a custom-built microscope. | Cytoskeleton | | 316 | 44,751 | 463 | | 633 | 244,941 | 926 | Cells, Tools and Techniques | | | | Melike Lakadamyali, Perelman School of Medicine at the University of Pennsylvania. | | | Microtubules and tau aggregates | Active | Photograph | A web of magenta fibers with light-blue spots throughout. | | | Melina Gyparaki, Melike Lakadamyali’s lab, Perelman School of Medicine at the University of Pennsylvania. | 673 | 832,104 | 456 | From: Lakadamyali, Melike < melikel@pennmedicine.upenn.edu> Sent: Tuesday, February 1, 2022 12:50 PM To: Abbey Bigler < abigler@iqsolutions.com> Subject: RE: NIGMS Blog Request <Br><Br> Hi Abbey, Please find attached the images with a caption and the type of microscope that was used. Let me know if this is good or if you need something more. I give permission for the use of these images in the NIGMS image and video gallery and I confirm the materials are free of copyright restrictions. Best, Melike | Dual-color super-resolution image of microtubules (magenta) and aggregates of the microtubule-associated protein tau (cyan) in a cell model of tauopathy. The image was captured using Stochastic Optical Reconstruction Microscopy (STORM) on an Oxford Nanoimager (ONI) microscope. | Cytoskeleton | | 336 | 27,221 | 227 | | 336 | 27,221 | 227 | Cells, Injury and Illness, Tools and Techniques | | | | Melike Lakadamyali, Perelman School of Medicine at the University of Pennsylvania. | | | Chromatin in human tenocyte | Active | Photograph | An oblong, mostly blue shape with red spots concentrated around its perimeter and in its middle. | | | Su Chin Heo, Melike Lakadamyali’s lab, Perelman School of Medicine at the University of Pennsylvania. | 500 | 338,478 | 480 | From: Lakadamyali, Melike < melikel@pennmedicine.upenn.edu> Sent: Tuesday, February 1, 2022 12:50 PM To: Abbey Bigler < abigler@iqsolutions.com> Subject: RE: NIGMS Blog Request <Br><Br> Hi Abbey, Please find attached the images with a caption and the type of microscope that was used. Let me know if this is good or if you need something more. I give permission for the use of these images in the NIGMS image and video gallery and I confirm the materials are free of copyright restrictions. Best, Melike | Super-resolution image of chromatin in a degenerating human tenocyte. Color coding shows low (blue) and high (red) density chromatin domains. The image was captured using Stochastic Optical Reconstruction Microscopy (STORM) on an Oxford Nanoimager (ONI) microscope. In the fibroblast/tenocyte images, it is the nucleus that is being shown. | | | 250 | 17,657 | 240 | | 250 | 17,657 | 240 | Cells, Tools and Techniques | | | | Melike Lakadamyali, Perelman School of Medicine at the University of Pennsylvania. | | | Zebrafish embryo | Active | Photograph | Long, wormlike structure with some see-through and bright blue areas. | A zebrafish embryo showing its natural colors. Zebrafish have see-through eggs and embryos, making them ideal research organisms for studying the earliest stages of development. This image was taken in transmitted light under a polychromatic polarizing microscope. | | Andrew Latimer and Michael Shribak, Marine Biological Laboratory/University of Chicago. | 1,024 | 986,844 | 1,344 | Hi Rachel, Please find the image attached. NIGMS has my permission to add this image to their image and video gallery. I have more images, which I can share with the NIGMS Image and Video Gallery. Could I upload the images to my University of Chicago Box and provide you a link for download? Thank you, Michael Michael Shribak, Ph.D. Senior Scientist Marine Biological Laboratory/ University of Chicago 7 MBL St Woods Hole, MA 02543
| Zebrafish embryo in transmitted light under polychromatic polarizing microscope. The picture shows real colors, as it is seen by naked eye. objective lens Olympus UPlanFL N 4x/0.13, image size 1.48mm x 1.0mm. The new microscope ( https://www.nature.com/articles/srep17340) was developed with support of the NIGMS grant R01 GM101701. | blue, line, circle | | 256 | 6,533 | 336 | | 512 | 26,758 | 672 | Cells, Molecular Structures, Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | Crane fly spermatocyte undergoing meiosis | Active | Video | A black and white video showing a cell dividing, with chromosomes being pulled apart at the spindle. | A crane fly spermatocyte during metaphase of meiosis-I, a step in the production of sperm. A meiotic spindle pulls apart three pairs of autosomal chromosomes, along with a sex chromosome on the right. Tubular mitochondria surround the spindle and chromosomes. This video was captured with quantitative orientation-independent differential interference contrast and is a time lapse showing a 1-second image taken every 30 seconds over the course of 30 minutes. <Br><Br> More information about the research that produced this video can be found in the <em>J. Biomed Opt.</em> paper <a href=" https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2302836/">“Orientation-Independent Differential Interference Contrast (DIC) Microscopy and Its Combination with Orientation-Independent Polarization System”</a> by Shribak et. al. | | Michael Shribak, Marine Biological Laboratory/University of Chicago, and James LaFountain, University at Buffalo. | | 15,559,688 | | Yes, I give my permission to add the three movies (crane fly, circular lamellipodia, and baby squids) and the mouse brain slice image to your image and video gallery. Thank you, Michael Michael Shribak, Ph.D. Senior Scientist Marine Biological Laboratory/ University of Chicago 7 MBL St Woods Hole, MA 02543
| The movie shows an example of the OI-DIC image of a crane fly spermatocyte during metaphase of meiosis-I, taken with a 100x/1.30 oil immersion objective lens. The three autosomal, bivalent chromosomes are pulled apart at the spindle equator, along with one of the X-Y sex univalents located at the right. The distribution of tubular mitochondria surrounding the spindle and granual chromosome structure is clearly visible. The experiment was done by M. Shribak and J. R. LaFountain, Jr. (University at Buffalo, Buffalo, NY) (Shribak et al., 2008). David Biggs, of KB Imaging Solutions LLC, Loomis, CA, computed the optical path difference (OPD) image, using iterative deconvolution algorithms. Image acquisition and processing took about 1 second each. Image size is 68 µm x68 µm. We took one OPD image each 30 seconds. Captured with quantitative orientation-independent differential interference contrast (OI-DIC). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2302836/ The overall time frame of this time-lapse video is 30 min. https://figshare.com/articles/media/Crane_Fly_movie_avi/6483647 | cell division | | | | | | | | | Cells, Molecular Structures, Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | Epithelial cell migration | Active | Video | A black and white video showing cells moving to close a wound. | High-resolution time lapse of epithelial (skin) cell migration and wound healing. It shows an image taken every 13 seconds over the course of almost 14 minutes. The images were captured with quantitative orientation-independent differential interference contrast (DIC) microscope (left) and a conventional DIC microscope (right). <Br><Br>More information about the research that produced this video can be found in the <em>Journal of Microscopy</em> paper <a href=" https://onlinelibrary.wiley.com/doi/10.1111/jmi.12682/">“An Orientation-Independent DIC Microscope Allows High Resolution Imaging of Epithelial Cell Migration and Wound Healing in a Cnidarian Model”</a> by Malamy and Shribak. | | Michael Shribak, Marine Biological Laboratory/University of Chicago, and Jocelyn Malamy, University at Chicago. | | 18,132,166 | | Yes, I give my permission to add the three movies (crane fly, circular lamellipodia, and baby squids) and the mouse brain slice image to your image and video gallery. Thank you, Michael Michael Shribak, Ph.D. Senior Scientist Marine Biological Laboratory/ University of Chicago 7 MBL St Woods Hole, MA 02543
| circular lamellipodia. High resolution imaging of epithelial cell migration and wound healing in a Chidarian model using orientation-independent DIC microscope (left) and conventional DIC microscope (right). This is a time-lapse movie of small wounds healing. The time interval between frames was 13 seconds. The duration of the entire movie is 13 min 39 sec. Captured with quantitative orientation-independent differential interference contrast (OI-DIC). I think yes that circular lamellipodia are a formation of the epithelial cells. Yes, it would be appropriate to use a publication https://doi.org/10.1111/jmi.12682 as a reference. https://figshare.com/articles/media/movie_2_circular_lamellipodia_v2_avi/5445208 | cell movement, heal cells | | | | | | | | | Cells, Molecular Structures, Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | Mouse brain slice showing nerve cells | Active | Photograph | Groups of colored lines. | A 20-µm thick section of mouse midbrain. The nerve cells are transparent and weren’t stained. Instead, the color is generated by interaction of white polarized light with the molecules in the cells and indicates their orientation. <Br><Br>The image was obtained with a polychromatic polarizing microscope that shows the polychromatic birefringent image with hue corresponding to the slow axis orientation. More information about the microscopy that produced this image can be found in the <em>Scientific Reports</em> paper <a href=" https://www.nature.com/articles/srep17340/">“Polychromatic Polarization Microscope: Bringing Colors to a Colorless World”</a> by Shribak. | | Michael Shribak, Marine Biological Laboratory/University of Chicago, and Timothy Balmer, Arizona State University. | 328 | 52,591 | 624 | Yes, I give my permission to add the three movies (crane fly, circular lamellipodia, and baby squids) and the mouse brain slice image to your image and video gallery. Thank you, Michael Michael Shribak, Ph.D. Senior Scientist Marine Biological Laboratory/ University of Chicago 7 MBL St Woods Hole, MA 02543
| Polychromatic polarization microscope: bringing colors to a colorless world. Shribak M. Sci Rep. 2015 Nov 27;5:17340. Mouse midbrain section image obtained with new polychromatic polarizing microscope ( https://www.nature.com/articles/srep17340), which allows directly see the polychromatic birefringent image with hue corresponding to the slow axis orientation. The image shows a coronal view of 20-µm thick section of the brain, which has been sliced down a vertical axis. No staining was applied to the transparent specimen. Nerve cells appear in the real colors that reveal orientation of the molecules. Let’s credit for the mouse midbrain image to me and Tim Balmer. Tim kindly provided the specimen. | blue, red, green, pink, neurons | | 164 | 9,667 | 312 | | 164 | 9,667 | 312 | Cells, Molecular Structures, Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | Arachnoidiscus diatom | Active | Photograph | A red Ferris wheel-like structure with a blue background. | An <em> Arachnoidiscus</em> diatom with a diameter of 190µm. Diatoms are microscopic algae that have cell walls made of silica, which is the strongest known biological material relative to its density. In <em> Arachnoidiscus</em>, the cell wall is a radially symmetric pillbox-like shell composed of overlapping halves that contain intricate and delicate patterns. Sometimes, <em> Arachnoidiscus</em> is called “a wheel of glass.” <Br><Br> This image was taken with the orientation-independent differential interference contrast microscope.
| | Michael Shribak, Marine Biological Laboratory/University of Chicago. | 729 | 217,641 | 750 | Yes, I give my permission to add the three movies (crane fly, circular lamellipodia, and baby squids) and the mouse brain slice image to your image and video gallery. I would like to add new image of diatom Arachnoidiscus, which I called “Happy 4th of July”. Thank you, Michael Michael Shribak, Ph.D. Senior Scientist Marine Biological Laboratory/ University of Chicago 7 MBL St Woods Hole, MA 02543
| I would like to add new image of diatom Arachnoidiscus, which I called “Happy 4th of July”. The is image was taken with the orientation-independent differential interference contrast (OI-DIC) microscope ( https://doi.org/10.1111/jmi.12682). Diatom Arachnoidiscus has silicified cell wall, which forms a radially symmetric pillbox-like shell (frustule) composed of overlapping halves that contain intricate and delicate patterns. Sometimes, it is called “a wheel of glass”. Diatom Arachnoidiscus deserves the term of “living photonic crystals” and can be employed for enabling sub-diffractive focusing of light. Diameter of shown diatom is 190µm. | red and blue round structure that looks like a ferris wheel, fireworks, Independence Day | | 364 | 40,713 | 374 | | 364 | 40,713 | 374 | Cells, Molecular Structures, Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | Young squids | Active | Video | Small, translucent squids swimming. As they move, the translucent color of their bodies changes from shades of blue/greens to pink/purples. | Real-time movie of young squids. Squids are often used as research organisms due to having the largest nervous system of any invertebrate, complex behaviors like instantaneous camouflage, and other unique traits. <Br><Br>This video was taken with polychromatic polarization microscope, as described in the <em>Scientific Reports</em> paper <a href=" https://www.nature.com/articles/srep17340/">“Polychromatic Polarization Microscope: Bringing Colors to a Colorless World”</a> by Shribak. The color is generated by interaction of white polarized light with the squid’s transparent soft tissue. The tissue works as a living tunable spectral filter, and the transmission band depends on the molecular orientation. When the young squid is moving, the tissue orientation changes, and its color shifts accordingly. | | Michael Shribak, Marine Biological Laboratory/University of Chicago, and Elizabeth Lee, University of Chicago. | | 16,700,234 | | Yes, I give my permission to add the three movies (crane fly, circular lamellipodia, and baby squids) and the mouse brain slice image to your image and video gallery. Thank you, Michael Michael Shribak, Ph.D. Senior Scientist Marine Biological Laboratory/ University of Chicago 7 MBL St Woods Hole, MA 02543
| | Cephalopods | | | | | | | | | Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | Drosophila (fruit fly) myosin 1D motility assay | Active | Video | | Actin gliding powered by myosin 1D. Note the counterclockwise motion of the gliding actin filaments. | | Serapion Pyrpassopoulos and E. Michael Ostap, University of Pennsylvania | 221 | 2,007,223 | 296 | | | protein | | 55 | 1,211 | 73 | | 110 | 3,443 | 147 | Molecular Structures | | | | Serapion Pyrpassopoulos and E. Michael Ostap, University of Pennsylvania | | | C. elegans showing internal structures | Active | Photograph | The elongated body of a worm with variously shaped structures inside. | An image of <em>Caenorhabditis elegans</em>, a tiny roundworm, showing internal structures including the intestine, pharynx, and body wall muscle. <em>C. elegans</em> is one of the simplest organisms with a nervous system. Scientists use it to study nervous system development, among other things. This image was captured with a quantitative orientation-independent differential interference contrast (OI-DIC) microscope. The scale bar is 100 µm. <Br><Br> More information about the microscopy that produced this image can be found in the <em>Journal of Microscopy</em> paper <a href=" https://onlinelibrary.wiley.com/doi/10.1111/jmi.12682/">“An Orientation-Independent DIC Microscope Allows High Resolution Imaging of Epithelial Cell Migration and Wound Healing in a Cnidarian Model”</a> by Malamy and Shribak. | | Michael Shribak and Rachel Gray, Marine Biological Laboratory/University of Chicago. | 1,386 | 3,193,504 | 2,304 | From: Michael Shribak mshribak@mbl.edu Sent: Friday, July 15, 2022 1:03 PM To: Crowley, Rachel (NIH/NIGMS) [E] rachel.crowley@nih.gov Subject: [EXTERNAL] C. elegans images <Br><Br> Hi Rachel, <Br><Br> I am wondering if you would be interesting to add to your gallery the attached image of C. elegans. The photo was captured with quantitative orientation-independent differential interference contrast. The scale bar is 100 µm. <Br><Br> You can also consider adding a video of trapped C. elegans worm https://figshare.com/articles/media/Caenorhabditis_elegans/15046812 <Br><Br> Thank you for your consideration, Michael <Br><Br> --- Michael Shribak, Ph.D. Senior Scientist Marine Biological Laboratory 7 MBL St Woods Hole, MA 02543 office phone: (508) 289-7242 email: mshribak@mbl.edu | A high-resolution, label-free optical section of the nematode Caenorhabditis elegans captured with quantitative orientation-independent differential interference contrast (OI-DIC) microscope. C. elegans is a model organism for investigation primarily of development of the nervous system in animals. It is one of the simplest organisms with a nervous system. The image clearly shows internal organs of the worm, such as intestine, body wall muscle, and pharynx. The scale bar is 100 µm. <Br><Br> More information about the microscopy that produced this image can be found in the Journal of Microscopy paper “An Orientation-Independent DIC Microscope Allows High Resolution Imaging of Epithelial Cell Migration and Wound Healing in a Cnidarian Model” by Malamy and Shribak. OI-DIC was invented at the MBL and has been developed with support of NIGMS grant R01 GM101701. | research organism, model organism, nematode | | 346 | 10,192 | 575 | | 693 | 42,019 | 1,152 | Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | C. elegans trapped by carnivorous fungus | Active | Video | A worm wiggling as it attempts to move forward while its tail is snared by fungal ring traps. More ring traps can be seen in the background attached to crisscrossing fungal threads. | Real-time footage of <em>Caenorhabditis elegans</em>, a tiny roundworm, trapped by a carnivorous fungus, <em>Arthrobotrys dactyloides</em>. This fungus makes ring traps in response to the presence of <em>C. elegans</em>. When a worm enters a ring, the trap rapidly constricts so that the worm cannot move away, and the fungus then consumes the worm. The size of the imaged area is 0.7mm x 0.9mm. <Br><Br> This video was obtained with a polychromatic polarizing microscope (PPM) in white light that shows the polychromatic birefringent image with hue corresponding to the slow axis orientation. More information about PPM can be found in the <em>Scientific Reports</em> paper <a href=" https://www.nature.com/articles/srep17340/">“Polychromatic Polarization Microscope: Bringing Colors to a Colorless World”</a> by Shribak. | | Michael Shribak, Marine Biological Laboratory/University of Chicago, and Fred Chang, University of California, San Francisco. | | 5,392,883 | | From: Michael Shribak mshribak@mbl.edu Sent: Friday, July 15, 2022 1:03 PM To: Crowley, Rachel (NIH/NIGMS) [E] rachel.crowley@nih.gov Subject: [EXTERNAL] C. elegans images <Br><Br> Hi Rachel, <Br><Br> I am wondering if you would be interesting to add to your gallery the attached image of C. elegans. The photo was captured with quantitative orientation-independent differential interference contrast. The scale bar is 100 µm. <Br><Br> You can also consider adding a video of trapped C. elegans worm https://figshare.com/articles/media/Caenorhabditis_elegans/15046812 <Br><Br> Thank you for your consideration, Michael <Br><Br> --- Michael Shribak, Ph.D. Senior Scientist Marine Biological Laboratory 7 MBL St Woods Hole, MA 02543 office phone: (508) 289-7242 email: mshribak@mbl.edu | Real-time movie of a carnivorous fungus A. dactyloides that traps and eats nematodes. This fungus makes many circular ring traps in response to the presence of C. elegans worms. When the worm enters the ring, the ring rapidly constricts to trap the worm so that it cannot move away. The fungus will then send in hyphae that will kill and eat the worm from the inside. The size of imaged area is 0.7mm x 0.9mm. <Br><Br> The movie was obtained with a polychromatic polarizing microscope (PPM) in white light that shows the polychromatic birefringent image with hue corresponding to the slow axis orientation. More information about the microscopy that produced this image can be found in the Scientific Reports paper “Polychromatic Polarization Microscope: Bringing Colors to a Colorless World”. PPM was invented at the MBL and has been developed with support of NIGMS grant R01 GM101701. | research organism, model organism, nematode, fungi | | | | | | | | | Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | Trigonium diatom | Active | Photograph | A triangle with rounded corners filled by a honeycomb structure. | A <em>Trigonium</em> diatom imaged by a quantitative orientation-independent differential interference contrast (OI-DIC) microscope. Diatoms are single-celled photosynthetic algae with mineralized cell walls that contain silica and provide protection and support. These organisms form an important part of the plankton at the base of the marine and freshwater food chains. The width of this image is 90 μm. <Br><Br> More information about the microscopy that produced this image can be found in the <em>Journal of Microscopy</em> paper <a href=" https://onlinelibrary.wiley.com/doi/10.1111/jmi.12682/">“An Orientation-Independent DIC Microscope Allows High Resolution Imaging of Epithelial Cell Migration and Wound Healing in a Cnidarian Model”</a> by Malamy and Shribak. | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | 3,372 | 8,990,986 | 3,748 | | A high-resolution, label-free optical section of the diatom Trigonium captured with quantitative orientation-independent differential interference contrast (OI-DIC) microscope. Diatoms are single-celled photosynthetic algae, of which there are about 100,000 species. They have mineralized cell walls (frustules) that contain silica and provide protection and support. The diatoms form an important part of the plankton at the base of the marine and freshwater food chains. The image width is 90 μm. <Br><Br> More information about the microscopy that produced this image can be found in the Journal of Microscopy paper “An Orientation-Independent DIC Microscope Allows High Resolution Imaging of Epithelial Cell Migration and Wound Healing in a Cnidarian Model” by Malamy and Shribak. OI-DIC was invented at the Marine Biological Laboratory (Woods Hole, MA) and has been developed with support of NIGMS grant R01 GM101701. | unicellular, microscopic | | 843 | 135,983 | 937 | | 1,686 | 708,601 | 1,874 | Cells, Tools and Techniques | | | | Michael Shribak, Marine Biological Laboratory/University of Chicago. | | | Crawling cell | Active | Photograph | A round, speckled blue shape inside a semicircular made up of many pink filaments. | A crawling cell with DNA shown in blue and actin filaments, which are a major component of the cytoskeleton, visible in pink. Actin filaments help enable cells to crawl. This image was captured using structured illumination microscopy. | | Dylan T. Burnette, Vanderbilt University School of Medicine. | 7,620 | 15,216,842 | 8,000 | From: Burnette, Dylan Tyler dylan.burnette@vanderbilt.edu Sent: Monday, November 14, 2022 9:46 AM To: Bigler, Abbey (NIH/NIGMS) [C] abbey.bigler@nih.gov Subject: [EXTERNAL] Re: NIGMS Gallery Request <Br><Br> Hi Abbey, <Br><Br> I would be happy for my images/videos to be added to the NIGMS gallery. Do you need the original versions? <Br><Br> Dylan | This image shows a cell that has been photographed using structured illumination microscopy (SIM). DNA in the nucleus (blue) and a major component of the cytoskeleton (actin filaments) are shown. | | | 1,905 | 286,331 | 2,000 | | 3,810 | 1,108,153 | 4,000 | Cells, Tools and Techniques | | | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | | Dividing cell | Active | Video | An oblong blue shape with a pink mass in the middle. The pink mass divides in two, then the blue shape divides so that each half contains one of the new pink masses. | As this cell was undergoing cell division, it was imaged with two microscopy techniques: differential interference contrast (DIC) and confocal. The DIC view appears in blue and shows the entire cell. The confocal view appears in pink and shows the chromosomes. | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | 14,123,647 | | From: Burnette, Dylan Tyler dylan.burnette@vanderbilt.edu Sent: Monday, November 14, 2022 9:46 AM To: Bigler, Abbey (NIH/NIGMS) [C] abbey.bigler@nih.gov Subject: [EXTERNAL] Re: NIGMS Gallery Request <Br><Br> Hi Abbey, <Br><Br> I would be happy for my images/videos to be added to the NIGMS gallery. Do you need the original versions? <Br><Br> Dylan | This video shows a cell in culture going through cell division as seen through a microscope. It was imaged with two different microscopy techniques: differential interference contrast (DIC) and confocal (fluorescence). The DIC channel is shown in blue and it shows the entire cell. The confocal channel is shown in pink and shows the chromosomes. | mitosis, dna, genome | | | | | | | | | Cells, Tools and Techniques | | | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | | Dying melanoma cells | Active | Video | Several large round shapes shriveling up and bursting. | Melanoma (skin cancer) cells undergoing programmed cell death, also called apoptosis. This process was triggered by raising the pH of the medium that the cells were growing in. Melanoma in people cannot be treated by raising pH because that would also kill healthy cells. This video was taken using a differential interference contrast (DIC) microscope. | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | 8,300,891 | | From: Burnette, Dylan Tyler dylan.burnette@vanderbilt.edu Sent: Monday, November 14, 2022 9:46 AM To: Bigler, Abbey (NIH/NIGMS) [C] abbey.bigler@nih.gov Subject: [EXTERNAL] Re: NIGMS Gallery Request <Br><Br> Hi Abbey, <Br><Br> I would be happy for my images/videos to be added to the NIGMS gallery. Do you need the original versions? <Br><Br> Dylan | This video shows melanoma cancer cells in culture as they go through programed cell death (apoptosis) as seen through a differential interference contrast (DIC) microscope. Killing cancer cells inside of a human is usually complicated by the need to keep the rest of the cells in the body alive. However, in culture it is more straightforward. In this case, the pH of the medium was raised to a level that triggered apoptosis; not something that would be effective inside a body, as it would also kill a patient’s healthy cells. | | | | | | | | | | Cells, Tools and Techniques | | | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | | Multinucleated cancer cell | Active | Video | Three light-blue circles surrounded by an irregular red shape that also contains yellow, wiggling, thread-like structures. | A cancer cell with three nuclei, shown in turquoise. The abnormal number of nuclei indicates that the cell failed to go through cell division, probably more than once. Mitochondria are shown in yellow, and a protein of the cell’s cytoskeleton appears in red. This video was captured using a confocal microscope. | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | 8,985,870 | | From: Burnette, Dylan Tyler dylan.burnette@vanderbilt.edu Sent: Monday, November 14, 2022 9:46 AM To: Bigler, Abbey (NIH/NIGMS) [C] abbey.bigler@nih.gov Subject: [EXTERNAL] Re: NIGMS Gallery Request <Br><Br> Hi Abbey, <Br><Br> I would be happy for my images/videos to be added to the NIGMS gallery. Do you need the original versions? <Br><Br> Dylan | This video shows a cancer cell videoed using a confocal microscope. The cell has an abnormal number of nuclei (cyan), which indicates that it had previously failed to go through cell division; probably more than once. The powerhouses of the cell, mitochondria (yellow), and a component of the cell’s cytoskeleton, VASP (red), are also shown. | nucleus, mitosis | | | | | | | | | Cells, Tools and Techniques | | | | Dylan T. Burnette, Vanderbilt University School of Medicine. | | | Regenerating lizard tail | Active | Photograph | An oblong shape with blue throughout and red patches concentrated in the middle. A smattering of small green dots appears in the top half of the shape and large white spots sit along its perimeter. | The interior of a regenerating lizard tail 14 days after the original tail was amputated. Cell nuclei (blue), proliferating cells (green), cartilage (red), and muscle (white) have been visualized with immunofluorescence staining. | | Thomas Lozito, University of Southern California. | 783 | 822,948 | 877 | From: Thomas Lozito tomlozito@gmail.com Sent: Wednesday, January 4, 2023 6:43 PM To: Bigler, Abbey (NIH/NIGMS) [C] abbey.bigler@nih.gov Subject: Re: [EXTERNAL] Re: NIGMS Blog Post About You Publishing Tomorrow <Br><Br> Hi Abby. Sure, the image is free of copyright restrictions. <Br><Br> Thanks, <Br><Br> Tom <Br><Br> On Wed, Jan 4, 2023 at 2:43 PM Bigler, Abbey (NIH/NIGMS) [C] abbey.bigler@nih.gov wrote: <Br><Br> Hi Tom, <Br><Br> I realized I forgot to ask you a question in my previous email. Would you be interested in having your image of a regenerating lizard tail (attached) featured in the NIGMS Image and Video Gallery? We would also be happy to consider featuring any other images/videos that you have from NIGMS-funded research and would like to share. Our gallery showcases NIGMS-funded work, and we feature content from it in our digital and print publications, as well as on social media. Other people may use items from the gallery for non-commercial purposes as long as they credit the source (i.e., you/your colleagues). <Br><Br> If you’d like to see your image added to the NIGMS gallery, we would just need written permission that confirms the image is free of copyright restrictions. <Br><Br> If you have any questions, I’d be happy to answer them. <Br><Br> Thanks again! <Br><Br> Abbey | Microscopy image is a regenerating lizard tail collected 14 days post-tail amputation. Immunofluorescence staining was used to visualize different tissues. Cell nuclei are labeled blue, proliferating cells are labeled green, cartilage is labeled red, and muscle is labeled white. | reptiles, research organisms, regeneration | | 391 | 28,545 | 438 | | 391 | 28,545 | 438 | Cells, Injury and Illness, Tools and Techniques | | | Used in the Biomedical Beat blog post “A Tail of Tales: How Reptile Regeneration Could Help Humans” published January 4, 2023. | Thomas Lozito, University of Southern California. | | | Snowflake yeast | Active | Photograph | Many ovals connected to one another. Those at the top of the image are mostly red, while those at the bottom are mostly green, with red spots where they connect to other ovals. | | | Anthony Burnetti, Ozan Bozdağ, and William Ratcliff, Georgia Institute of Technology. | 1,021 | 1,380,269 | 1,021 | From: Ratcliff, William C william.ratcliff@biology.gatech.edu Sent: Tuesday, January 3, 2023 4:16 PM To: Kimberly Rousseau krousseau@iqsolutions.com Cc: Tony Burnetti tony.burnetti@gmail.com; Burnetti, Anthony J anthony.burnetti@biosci.gatech.edu Subject: Re: For Review: NIGMS Blog Post <Br><Br> CAUTION: This email originated from an external sender <Br><Br> Hi Kim, <Br><Br> Great! Looking forward to reading the final piece. <Br><Br> I'm more than happy to add these images to the NIGMS gallery! These images have not been used in any papers yet, but I was planning on submitting them as journal cover art. I assume that's still OK if they're in the NIGMS gallery first. If not, I'll tell the journals to shove it. They can't hold copyright over our images. <Br><Br> Credit information: Image by Anthony Burnetti, Ozan Bozdag and Will Ratcliff, Georgia Institute of Techology. <Br><Br> As for the microscopy details, I will let Tony answer this. He is the one who took the pictures. <Br><Br> Tony, can you do me a favor and write a brief title / caption for these images? <Br><Br> Cheers, <Br><Br> Will <Br><Br> ps- Happy New Year! <Br><Br> Associate Professor, Biological Sciences Director, Interdisciplinary Graduate Program in Quantitative Biosciences (QBioS) Georgia Institute of Technology Lab website: http://www.ratclifflab.biology.gatech.edu/ Google Scholar profile Twitter: @wc_ratcliff Phone: 612-840-4983 Office: 331 Cherry Emerson Lab: 330 Cherry Emerson | “Snowflake yeast” are the result of many generations of settling selection driving yeast into multicellular forms. They consist of branching chains of cells attached to their mothers and daughters. Staining cell membranes (green) and cell walls (red) reveals the connections between the cells, holding them together into a larger whole. The properties of these cell to cell connections change and evolve over continued laboratory selection. Image captured via spinning disk confocal microscopy. <Br><Br> The different colors are coming from the fact that older and younger cells seemingly have a systematically different staining. Younger cells are taking in less cell wall stain, and older cells are systematically taking in less membrane stain. This could be due to the same thing – older cells having more cell wall, which both stains and prevents the membrane stain from getting through as well. | Research organisms, model organisms, saccharomyces cerevisiae, balloons | | 510 | 41,665 | 510 | | 510 | 41,665 | 510 | Cells, Tools and Techniques | | | | William Ratcliff, Georgia Institute of Technology. | | | Snowflake yeast | Active | Photograph | Many long ovals outlined in blue and magenta and connected to one another. | | | Anthony Burnetti, Ozan Bozdağ, and William Ratcliff, Georgia Institute of Technology. | 1,021 | 1,438,838 | 1,021 | From: Ratcliff, William C william.ratcliff@biology.gatech.edu Sent: Tuesday, January 3, 2023 4:16 PM To: Kimberly Rousseau krousseau@iqsolutions.com Cc: Tony Burnetti tony.burnetti@gmail.com; Burnetti, Anthony J anthony.burnetti@biosci.gatech.edu Subject: Re: For Review: NIGMS Blog Post <Br><Br> CAUTION: This email originated from an external sender <Br><Br> Hi Kim, <Br><Br> Great! Looking forward to reading the final piece. <Br><Br> I'm more than happy to add these images to the NIGMS gallery! These images have not been used in any papers yet, but I was planning on submitting them as journal cover art. I assume that's still OK if they're in the NIGMS gallery first. If not, I'll tell the journals to shove it. They can't hold copyright over our images. <Br><Br> Credit information: Image by Anthony Burnetti, Ozan Bozdag and Will Ratcliff, Georgia Institute of Techology. <Br><Br> As for the microscopy details, I will let Tony answer this. He is the one who took the pictures. <Br><Br> Tony, can you do me a favor and write a brief title / caption for these images? <Br><Br> Cheers, <Br><Br> Will <Br><Br> ps- Happy New Year! <Br><Br> Associate Professor, Biological Sciences Director, Interdisciplinary Graduate Program in Quantitative Biosciences (QBioS) Georgia Institute of Technology Lab website: http://www.ratclifflab.biology.gatech.edu/ Google Scholar profile Twitter: @wc_ratcliff Phone: 612-840-4983 Office: 331 Cherry Emerson Lab: 330 Cherry Emerson | Stains and fluorescent proteins show the structure of large multicellular yeast clusters after 600 days of directed evolution for large size. Highly elongated cells are connected to each other by their cell walls (blue). Green fluorescent protein and membrane stains (red) reveal that even after hundreds of days of evolution leading to macroscopic growth forms, individual cells remain separate unlike in most multicellular fungi. <Br><Br> The cytoplasm is tagged with GFP, hence gaps within the cells where vacuoles are holding fluid that is not cytoplasm. <Br><Br> There does appear to be lots of overlap between the cell wall and membrane stains at this low magnification, but I believe I should probably indeed have called that channel magenta rather than red. | Research organisms, model organisms, saccharomyces cerevisiae | | 510 | 57,281 | 510 | | 510 | 57,281 | 510 | Cells, Tools and Techniques | | | Grant info: R35GM138030 | William Ratcliff, Georgia Institute of Technology. | | | Snowflake yeast | Active | Photograph | Several clusters, each made up of many branches of connected blue ovals. Each oval contains an orange circle. | | | Anthony Burnetti, Ozan Bozdağ, and William Ratcliff, Georgia Institute of Technology. | 2,042 | 7,093,238 | 2,043 | Grant: R35GM138030 From: Ratcliff, William C william.ratcliff@biology.gatech.edu Sent: Tuesday, January 3, 2023 4:16 PM To: Kimberly Rousseau krousseau@iqsolutions.com Cc: Tony Burnetti tony.burnetti@gmail.com; Burnetti, Anthony J anthony.burnetti@biosci.gatech.edu Subject: Re: For Review: NIGMS Blog Post <Br><Br> CAUTION: This email originated from an external sender <Br><Br> Hi Kim, <Br><Br> Great! Looking forward to reading the final piece. <Br><Br> I'm more than happy to add these images to the NIGMS gallery! These images have not been used in any papers yet, but I was planning on submitting them as journal cover art. I assume that's still OK if they're in the NIGMS gallery first. If not, I'll tell the journals to shove it. They can't hold copyright over our images. <Br><Br> Credit information: Image by Anthony Burnetti, Ozan Bozdag and Will Ratcliff, Georgia Institute of Techology. <Br><Br> As for the microscopy details, I will let Tony answer this. He is the one who took the pictures. <Br><Br> Tony, can you do me a favor and write a brief title / caption for these images? <Br><Br> Cheers, <Br><Br> Will <Br><Br> ps- Happy New Year! <Br><Br> Associate Professor, Biological Sciences Director, Interdisciplinary Graduate Program in Quantitative Biosciences (QBioS) Georgia Institute of Technology Lab website: http://www.ratclifflab.biology.gatech.edu/ Google Scholar profile Twitter: @wc_ratcliff Phone: 612-840-4983 Office: 331 Cherry Emerson Lab: 330 Cherry Emerson | Many basic cellular processes are affected by laboratory evolution of multicellular snowflake yeast for large size and increased strength. Pulling apart fragments of multicellular clusters subject to 600 days of evolution for large size, the shape and behavior of individual cells can be observed. Here, fluorescent proteins (orange) localized to nuclei allow changes in the process of cell division to be examined. <Br><Br> The blue is cell wall, a stain called calcofluor, and it is directly staining the polysaccharides. | Research organisms, model organisms, saccharomyces cerevisiae, nucleus | | 510 | 36,811 | 510 | | 1,021 | 156,036 | 1,021 | Cells, Tools and Techniques | | | | William Ratcliff, Georgia Institute of Technology. | | | Axolotl showing nervous system | Active | Photograph | A transparent salamander head with the shapes of a brain and spine shown in purple, surrounded by light blue. | The head of an axolotl—a type of salamander—that has been genetically modified so that its developing nervous system glows purple and its Schwann cell nuclei appear light blue. Schwann cells insulate and provide nutrients to peripheral nerve cells. Researchers often study axolotls for their extensive regenerative abilities. They can regrow tails, limbs, spinal cords, brains, and more. The researcher who took this image focuses on the role of the peripheral nervous system during limb regeneration. <Br><Br> This image was captured using a light sheet microscope. <Br><Br> Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6928">6928</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6932">6932</a>. | | Marko Pende, MDI Biological Laboratory; MDI Biological Laboratory Light Microscopy Facility; and the Murawala Lab, MDI Biological Laboratory and Hannover Medical School. | 4,128 | 42,970,238 | 9,234 | On Jan 11, 2023, at 2:59 PM, Prayag Murawala pmurawala@mdibl.org wrote: <Br><Br> Dear Abbey, <Br><Br> Feel free to rename images as you may see fit. Image credits: Dr. Marko Pende, MDIBL-LMF and Murawala Lab Let me know, if you need any further details. <Br><Br> Best, <Br><Br> Prayag <Br><Br> — Prayag Murawala, PhD Assistant Professor Pronouns: he / him / his 159, Old Bar Harbor Road | Bar Harbor, ME 04609, USA 207-288-9880, Ext. 468 | mdibl.org https://murawalalab.mdibl.org & die Klinik für Nieren- und Hochdruckerkrankungen (Clinic for Kidney and Hypertension Diseases) der Medizinische Hochschule Hannover (Hannover Medical School), Carl-Neuberg-Straße 1 | 30625 Hannover, Germany <Br><Br> https://orcid.org/0000-0002-0607-1059 https://www.ncbi.nlm.nih.gov/pubmed/ Twitter: pmurawala <Br><Br> Grant information: Sub-project ID 8474 of parent grant 5P20GM104318, PO Yang Zhou; MDI Biological Laboratory Light Microscopy Facility is supported by the Maine INBRE grant GM103423, PO Krishan Arora | Tissue cleared transgenic axolotl (B3Tub:Cherry) showing the developing nervous system (magenta) and cell nuclei (cyan). Recorded on: mesoSPIM light-sheet [Sourcing for additional details in the description is included in IVG metadata form that's on file] | research organisms, salamanders, amphibians | | 1,031 | 102,426 | 2,308 | | 2,064 | 430,375 | 4,617 | Tools and Techniques | | | | Prayag Murawala, MDI Biological Laboratory and Hannover Medical School. | | | Axolotls showing nervous system components | Active | Photograph | Six salamanders that appear translucent and have various internal structures highlighted in green and purple. | Axolotls—a type of salamander—that have been genetically modified so that various parts of their nervous systems glow purple and green. Researchers often study axolotls for their extensive regenerative abilities. They can regrow tails, limbs, spinal cords, brains, and more. The researcher who took this image focuses on the role of the peripheral nervous system during limb regeneration. <Br><Br> This image was captured using a stereo microscope. <Br><Br> Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6927">6927</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6932">6932</a>. | | Marko Pende, MDI Biological Laboratory; MDI Biological Laboratory Light Microscopy Facility; and the Murawala Lab, MDI Biological Laboratory and Hannover Medical School. | 3,300 | 6,091,435 | 2,550 | On Jan 11, 2023, at 2:59 PM, Prayag Murawala pmurawala@mdibl.org wrote: <Br><Br> Dear Abbey, <Br><Br> Feel free to rename images as you may see fit. Image credits: Dr. Marko Pende, MDIBL-LMF and Murawala Lab Let me know, if you need any further details. <Br><Br> Best, <Br><Br> Prayag <Br><Br> — Prayag Murawala, PhD Assistant Professor Pronouns: he / him / his 159, Old Bar Harbor Road | Bar Harbor, ME 04609, USA 207-288-9880, Ext. 468 | mdibl.org https://murawalalab.mdibl.org & die Klinik für Nieren- und Hochdruckerkrankungen (Clinic for Kidney and Hypertension Diseases) der Medizinische Hochschule Hannover (Hannover Medical School), Carl-Neuberg-Straße 1 | 30625 Hannover, Germany <Br><Br> https://orcid.org/0000-0002-0607-1059 https://www.ncbi.nlm.nih.gov/pubmed/ Twitter: pmurawala <Br><Br> Grant information: Sub-project ID 8474 of parent grant 5P20GM104318, PO Yang Zhou; MDI Biological Laboratory Light Microscopy Facility is supported by the Maine INBRE grant GM103423, PO Krishan Arora | Live imaging of different transgenic axolotl lines showing various components of the nervous system. Recorded on: Stereoscope Zeiss Axio Zoom (Contains many different transgenic axolotl lines - CAGGs:Lp-GFP-Lp-Cherry; B3Tub:Cherry_CNP:eGFP; CNP:eGFP, B3Tub:Cherry, Sox2:GFPnls-T2a-ER-Cre-ER, CAGGs:Cherry) [Sourcing for additional details in the description is included in IVG metadata form that's on file] | research organisms, salamanders, amphibians | | 825 | 42,230 | 637 | | 1,650 | 194,849 | 1,275 | Tools and Techniques | | | | Prayag Murawala, MDI Biological Laboratory and Hannover Medical School. | | | Mouse brain | Active | Photograph | A brain with various parts glowing green at different intensities. | | | Marko Pende, MDI Biological Laboratory; MDI Biological Laboratory Light Microscopy Facility; and the Murawala Lab, MDI Biological Laboratory and Hannover Medical School. | 4,935 | 19,960,258 | 9,234 | On Jan 11, 2023, at 2:59 PM, Prayag Murawala pmurawala@mdibl.org wrote: <Br><Br> Dear Abbey, <Br><Br> Feel free to rename images as you may see fit. Image credits: Dr. Marko Pende, MDIBL-LMF and Murawala Lab Let me know, if you need any further details. <Br><Br> Best, <Br><Br> Prayag <Br><Br> — Prayag Murawala, PhD Assistant Professor Pronouns: he / him / his 159, Old Bar Harbor Road | Bar Harbor, ME 04609, USA 207-288-9880, Ext. 468 | mdibl.org https://murawalalab.mdibl.org & die Klinik für Nieren- und Hochdruckerkrankungen (Clinic for Kidney and Hypertension Diseases) der Medizinische Hochschule Hannover (Hannover Medical School), Carl-Neuberg-Straße 1 | 30625 Hannover, Germany <Br><Br> https://orcid.org/0000-0002-0607-1059 https://www.ncbi.nlm.nih.gov/pubmed/ Twitter: pmurawala <Br><Br> Grant information: Sub-project ID 8474 of parent grant 5P20GM104318, PO Yang Zhou; MDI Biological Laboratory Light Microscopy Facility is supported by the Maine INBRE grant GM103423, PO Krishan Arora | Tissue cleared transgenic mouse brain (Thy1:YFP) labelled for different neuronal subpopulations. Recorded on: mesoSPIM light-sheet | research organisms, model organisms, nerve cells | | 1,233 | 107,710 | 2,308 | | 2,467 | 477,065 | 4,617 | Tools and Techniques | | | | Prayag Murawala, MDI Biological Laboratory and Hannover Medical School. | | | Mouse brain | Active | Photograph | Many points of light that together form a brain shape. | | | Marko Pende, MDI Biological Laboratory; MDI Biological Laboratory Light Microscopy Facility; and the Murawala Lab, MDI Biological Laboratory and Hannover Medical School. | 5,784 | 21,310,435 | 4,842 | On Jan 11, 2023, at 2:59 PM, Prayag Murawala pmurawala@mdibl.org wrote: <Br><Br> Dear Abbey, <Br><Br> Feel free to rename images as you may see fit. Image credits: Dr. Marko Pende, MDIBL-LMF and Murawala Lab Let me know, if you need any further details. <Br><Br> Best, <Br><Br> Prayag <Br><Br> — Prayag Murawala, PhD Assistant Professor Pronouns: he / him / his 159, Old Bar Harbor Road | Bar Harbor, ME 04609, USA 207-288-9880, Ext. 468 | mdibl.org https://murawalalab.mdibl.org & die Klinik für Nieren- und Hochdruckerkrankungen (Clinic for Kidney and Hypertension Diseases) der Medizinische Hochschule Hannover (Hannover Medical School), Carl-Neuberg-Straße 1 | 30625 Hannover, Germany <Br><Br> https://orcid.org/0000-0002-0607-1059 https://www.ncbi.nlm.nih.gov/pubmed/ Twitter: pmurawala <Br><Br> Grant information: Sub-project ID 8474 of parent grant 5P20GM104318, PO Yang Zhou; MDI Biological Laboratory Light Microscopy Facility is supported by the Maine INBRE grant GM103423, PO Krishan Arora | Tissue cleared transgenic mouse brain from Thy1:YFP mouse labelled for different neuronal subpopulations. Recorded on: mesoSPIM light-sheet | research organisms, model organisms, nerve cells | | 1,445 | 192,100 | 1,210 | | 2,892 | 937,069 | 2,421 | Tools and Techniques | | | | Prayag Murawala, MDI Biological Laboratory and Hannover Medical School. | | | Mouse brain | Active | Video | A range of views of a brain with various parts glowing green at different intensities. | | | Marko Pende, MDI Biological Laboratory; MDI Biological Laboratory Light Microscopy Facility; and the Murawala Lab, MDI Biological Laboratory and Hannover Medical School. | | 78,809,274 | | On Jan 11, 2023, at 2:59 PM, Prayag Murawala pmurawala@mdibl.org wrote: <Br><Br> Dear Abbey, <Br><Br> Feel free to rename images as you may see fit. Image credits: Dr. Marko Pende, MDIBL-LMF and Murawala Lab Let me know, if you need any further details. <Br><Br> Best, <Br><Br> Prayag <Br><Br> — Prayag Murawala, PhD Assistant Professor Pronouns: he / him / his 159, Old Bar Harbor Road | Bar Harbor, ME 04609, USA 207-288-9880, Ext. 468 | mdibl.org https://murawalalab.mdibl.org & die Klinik für Nieren- und Hochdruckerkrankungen (Clinic for Kidney and Hypertension Diseases) der Medizinische Hochschule Hannover (Hannover Medical School), Carl-Neuberg-Straße 1 | 30625 Hannover, Germany <Br><Br> https://orcid.org/0000-0002-0607-1059 https://www.ncbi.nlm.nih.gov/pubmed/ Twitter: pmurawala <Br><Br> Grant information: Sub-project ID 8474 of parent grant 5P20GM104318, PO Yang Zhou; MDI Biological Laboratory Light Microscopy Facility is supported by the Maine INBRE grant GM103423, PO Krishan Arora | Movie of a tissue cleared transgenic mouse brain (Thy1:GFP) labelled for different neuronal subpopulations. Recorded on: mesoSPIM light-sheet | research organisms, model organisms, nerve cells | | | | | | | | | Tools and Techniques | | | | Prayag Murawala, MDI Biological Laboratory and Hannover Medical School. | | | Axolotl | Active | Photograph | A salamander that’s glowing purple and has three feathery projections on each side of its head. Light blue spots appear in the salamander’s eyes and throughout its body. | An axolotl—a type of salamander—that has been genetically modified so that its developing nervous system glows purple and its Schwann cell nuclei appear light blue. Schwann cells insulate and provide nutrients to peripheral nerve cells. Researchers often study axolotls for their extensive regenerative abilities. They can regrow tails, limbs, spinal cords, brains, and more. The researcher who took this image focuses on the role of the peripheral nervous system during limb regeneration. <Br><Br> This image was captured using a stereo microscope. <Br><Br> Related to images <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6927">6927</a> and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6928">6928</a>. | | Marko Pende, MDI Biological Laboratory; MDI Biological Laboratory Light Microscopy Facility; and the Murawala Lab, MDI Biological Laboratory and Hannover Medical School. | 2,208 | 5,665,411 | 2,752 | On Jan 11, 2023, at 2:59 PM, Prayag Murawala pmurawala@mdibl.org wrote: <Br><Br> Dear Abbey, <Br><Br> Feel free to rename images as you may see fit. Image credits: Dr. Marko Pende, MDIBL-LMF and Murawala Lab Let me know, if you need any further details. <Br><Br> Best, <Br><Br> Prayag <Br><Br> — Prayag Murawala, PhD Assistant Professor Pronouns: he / him / his 159, Old Bar Harbor Road | Bar Harbor, ME 04609, USA 207-288-9880, Ext. 468 | mdibl.org https://murawalalab.mdibl.org & die Klinik für Nieren- und Hochdruckerkrankungen (Clinic for Kidney and Hypertension Diseases) der Medizinische Hochschule Hannover (Hannover Medical School), Carl-Neuberg-Straße 1 | 30625 Hannover, Germany <Br><Br> https://orcid.org/0000-0002-0607-1059 https://www.ncbi.nlm.nih.gov/pubmed/ Twitter: pmurawala <Br><Br> Grant information: Sub-project ID 8474 of parent grant 5P20GM104318, PO Yang Zhou; MDI Biological Laboratory Light Microscopy Facility is supported by the Maine INBRE grant GM103423, PO Krishan Arora | Live imaging of a transgenic axolotl (B3Tub:Cherry) showing the developing nervous system (magenta) and Schwann cells (cyan). Recorded on: Stereoskop Zeiss Axio Zoom [Sourcing for additional details in the description is included in IVG metadata form that's on file] | research organisms, salamanders, amphibians | | 552 | 22,048 | 688 | | 1,104 | 93,930 | 1,376 | Tools and Techniques | | | | Prayag Murawala, MDI Biological Laboratory and Hannover Medical School. | | | Zebrafish head vasculature | Active | Video | A range of views of a zebrafish head with blood vessels shown in purple. | Various views of a zebrafish head with blood vessels shown in purple. Researchers often study zebrafish because they share many genes with humans, grow and reproduce quickly, and have see-through eggs and embryos, which make it easy to study early stages of development. <Br><Br> This video was captured using a light sheet microscope. <Br><Br> Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6934">6934</a>. | | Marko Pende, MDI Biological Laboratory; MDI Biological Laboratory Light Microscopy Facility; and the Murawala Lab, MDI Biological Laboratory and Hannover Medical School. | | 81,780,842 | | On Jan 11, 2023, at 2:59 PM, Prayag Murawala pmurawala@mdibl.org wrote: <Br><Br> Dear Abbey, <Br><Br> Feel free to rename images as you may see fit. Image credits: Dr. Marko Pende, MDIBL-LMF and Murawala Lab Let me know, if you need any further details. <Br><Br> Best, <Br><Br> Prayag <Br><Br> — Prayag Murawala, PhD Assistant Professor Pronouns: he / him / his 159, Old Bar Harbor Road | Bar Harbor, ME 04609, USA 207-288-9880, Ext. 468 | mdibl.org https://murawalalab.mdibl.org & die Klinik für Nieren- und Hochdruckerkrankungen (Clinic for Kidney and Hypertension Diseases) der Medizinische Hochschule Hannover (Hannover Medical School), Carl-Neuberg-Straße 1 | 30625 Hannover, Germany <Br><Br> https://orcid.org/0000-0002-0607-1059 https://www.ncbi.nlm.nih.gov/pubmed/ Twitter: pmurawala <Br><Br> Grant information: Sub-project ID 8474 of parent grant 5P20GM104318, PO Yang Zhou; MDI Biological Laboratory Light Microscopy Facility is supported by the Maine INBRE grant GM103423, PO Krishan Arora | Movie of tissue cleared adult zebrafish labelled for blood vessels using intercardial Dextran568 dye injection. Recorded on: mesoSPIM light-sheet | research organisms, model organisms | | | | | | | | | Tools and Techniques | | | | Prayag Murawala, MDI Biological Laboratory and Hannover Medical School. | | | Zebrafish head vasculature | Active | Photograph | A fish head in shades of gray with purple blood vessels throughout. | A zebrafish head with blood vessels shown in purple. Researchers often study zebrafish because they share many genes with humans, grow and reproduce quickly, and have see-through eggs and embryos, which make it easy to study early stages of development. <Br><Br> This image was captured using a light sheet microscope. <Br><Br> Related to video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6933">6933</a>. | | Marko Pende, MDI Biological Laboratory; MDI Biological Laboratory Light Microscopy Facility; and the Murawala Lab, MDI Biological Laboratory and Hannover Medical School. | 4,228 | 7,663,208 | 5,692 | On Jan 11, 2023, at 2:59 PM, Prayag Murawala pmurawala@mdibl.org wrote: <Br><Br> Dear Abbey, <Br><Br> Feel free to rename images as you may see fit. Image credits: Dr. Marko Pende, MDIBL-LMF and Murawala Lab Let me know, if you need any further details. <Br><Br> Best, <Br><Br> Prayag <Br><Br> — Prayag Murawala, PhD Assistant Professor Pronouns: he / him / his 159, Old Bar Harbor Road | Bar Harbor, ME 04609, USA 207-288-9880, Ext. 468 | mdibl.org https://murawalalab.mdibl.org & die Klinik für Nieren- und Hochdruckerkrankungen (Clinic for Kidney and Hypertension Diseases) der Medizinische Hochschule Hannover (Hannover Medical School), Carl-Neuberg-Straße 1 | 30625 Hannover, Germany <Br><Br> https://orcid.org/0000-0002-0607-1059 https://www.ncbi.nlm.nih.gov/pubmed/ Twitter: pmurawala <Br><Br> Grant information: Sub-project ID 8474 of parent grant 5P20GM104318, PO Yang Zhou; MDI Biological Laboratory Light Microscopy Facility is supported by the Maine INBRE grant GM103423, PO Krishan Arora | Tissue cleared adult zebrafish labelled for blood vessels using intercardial Dextran568 dye injection. Recorded on: mesoSPIM light-sheet | research organisms, model organisms | | 1,057 | 57,459 | 1,423 | | 2,114 | 227,399 | 2,846 | Tools and Techniques | | | | Prayag Murawala, MDI Biological Laboratory and Hannover Medical School. | | | Insulin production and fat sensing in fruit flies | Active | Photograph | Large magenta blobs with small green dots in and around them. | | | Mroj Alassaf, Akhila Rajan’s lab, Fred Hutchinson Cancer Center | 2,024 | 22,262,588 | 3,875 | Grant R35GM124593 Hi Rachel, Thanks for your patience. Since the images are too large to attach I have uploaded them at this google drive link and you should be able to download it the link. You would also have received an email from my google drive with this link. Please let me know if you have any difficulties. Here are snapshots of the 4 images and attached word doc has the caption, and necessary credit. Again, thanks for reaching out to feature some of our work in the NIGMS image gallery as a resource. Best wishes, Akhila
| | fruit fly, nerve cells | | 506 | 63,213 | 968 | | 1,012 | 326,743 | 1,937 | Cells, Chemistry, Biochemistry, and Pharmacology, Tools and Techniques | | | | Akhila Rajan, Fred Hutchinson Cancer Center | | | Genetic mosaicism in fruit flies | Active | Photograph | Left, blue dots outlined in yellow; right, blue-green accumulation in the yellow outline but not outside of the outline. | | | Aditi Madan, Akhila Rajan’s lab, Fred Hutchinson Cancer Center | 605 | 248,010,816 | 1,190 | Grant R35GM124593 Hi Rachel, Thanks for your patience. Since the images are too large to attach I have uploaded them at this google drive link and you should be able to download it the link. You would also have received an email from my google drive with this link. Please let me know if you have any difficulties. Here are snapshots of the 4 images and attached word doc has the caption, and necessary credit. Again, thanks for reaching out to feature some of our work in the NIGMS image gallery as a resource. Best wishes, Akhila
| A genetically mosaic Drosophila adult fat tissue from the fly abdomen. This results in accumulation of a critical fly adipokine (blue-green) within the fat tissue cells that have a have a gene knockdown for a key nutrient sensing gene (in left panel). The dotted line shows the mutant cells and the rest of the cells are normal. Image was captured using a confocal and a maximum intensity projection of many slices is shown. | | | 151 | 6,835 | 297 | | 302 | 29,503 | 594 | Cells, Chemistry, Biochemistry, and Pharmacology, Genes, Tools and Techniques | | | | Akhila Rajan, Fred Hutchinson Cancer Center | | | Fruit fly starvation leads to adipokine accumulation | Active | Photograph | Two pictures, both with pink dots in a purple web. The bottom also had bright blue dots in the purple web. | | | Aditi Madan, Akhila Rajan’s lab, Fred Hutchinson Cancer Center | 1,214 | 227,697 | 588 | Grant R35GM124593 Hi Rachel, Thanks for your patience. Since the images are too large to attach I have uploaded them at this google drive link and you should be able to download it the link. You would also have received an email from my google drive with this link. Please let me know if you have any difficulties. Here are snapshots of the 4 images and attached word doc has the caption, and necessary credit. Again, thanks for reaching out to feature some of our work in the NIGMS image gallery as a resource. Best wishes, Akhila
| | | | 303 | 8,613 | 147 | | 607 | 38,609 | 294 | Cells, Chemistry, Biochemistry, and Pharmacology | | | | Akhila Rajan, Fred Hutchinson Cancer Center | | | Fruit fly brain responds to adipokines | Active | Photograph | Many large pockets of aqua, with a red line running down the middle and ending near many | | | Ava Brent, Akhila Rajan’s lab, Fred Hutchinson Cancer Center | 1,619 | 4,198,920 | 1,595 | rant R35GM124593 Hi Rachel, Thanks for your patience. Since the images are too large to attach I have uploaded them at this google drive link and you should be able to download it the link. You would also have received an email from my google drive with this link. Please let me know if you have any difficulties. Here are snapshots of the 4 images and attached word doc has the caption, and necessary credit. Again, thanks for reaching out to feature some of our work in the NIGMS image gallery as a resource. Best wishes, Akhila
| Drosophila adult brain showing neurons that respond to the adipokine (fat hormone) in aqua and the flies insulin producing neurons (red), are regulated by the adipokine. | nerve cells | | 404 | 24,095 | 398 | | 809 | 118,076 | 797 | Cells, Chemistry, Biochemistry, and Pharmacology | | | | Akhila Rajan, Fred Hutchinson Cancer Center | | | Breast cancer cells change migration phenotypes | Active | Video | On the left, a gray orb of cells moving, with small projections flying off. The same video is on the right, but the small projections are colored in different colors. | Cancer cells can change their migration phenotype, which includes their shape and the way that they move to invade different tissues. This movie shows breast cancer cells forming a tumor spheroid—a 3D ball of cancer cells—and invading the surrounding tissue. Images were taken using a laser scanning confocal microscope, and artificial intelligence (AI) models were used to segment and classify the images by migration phenotype. On the right side of the video, each phenotype is represented by a different color, as recognized by the AI program based on identifiable characteristics of those phenotypes. The movie demonstrates how cancer cells can use different migration modes during growth and metastasis—the spreading of cancer cells within the body. | | Austin Naylor and Bo Sun, Oregon State University. | | 4,930,702 | | Yes I give permission for inclusion in the NIGMS image and video gallery, the material is free of copyright restrictions. This work is supported by DOD award W81XWH-20-1-0444 (BC190068), and the National Institute of General Medical Sciences award 1R35GM138179. Bo Sun Associate Professor, Department of Physics Center for Quantitative Life Science Oregon State University https://sites.google.com/site/biophysicsbosun/home | Breast cancer cells invasion is accompanied with phenotype transition The movie shows breast cancer cells forming a tumor spheroid invade into tissue-mimicking collagen matrix. A laser-scanning confocal microscope was used to take the images, which were then sent to home-made AI models for automatic segmentation and classification. Colors represent the migration phenotype of cells recognized from their characteristic morphology. The movie demonstrates the plastic and heterogeneous migration programs executed by cancer cells during metastasis.
| | | | | | | | | | Cells, Tools and Techniques | | | | Bo Sun, Oregon State University. | | | SARS-CoV-2 nucleocapsid dimer | Active | Illustration | Three clumps of pink and purple connected by curved lines. | In SARS-CoV-2, the virus that causes COVID-19, nucleocapsid is a complex molecule with many functional parts. One section folds into an RNA-binding domain, with a groove that grips a short segment of the viral genomic RNA. Another section folds into a dimerization domain that brings two nucleocapsid molecules together. The rest of the protein is intrinsically disordered, forming tails at each end of the protein chain and a flexible linker that connects the two structured domains. These disordered regions assist with RNA binding and orchestrate association of nucleocapsid dimers into larger assemblies that package the RNA in the small space inside virions. Nucleocapsid is in magenta and purple, and short RNA strands are in yellow. <Br><Br> Find these in the RCSB Protein Data Bank: <a href=" https://www.rcsb.org/structure/7ACT">RNA-binding domain</a> (PDB entry 7ACT) and <a href=" https://www.rcsb.org/structure/6WJI">Dimerization domain</a> (PDB entry 6WJI). | | | 1,906 | 11,065,576 | 1,929 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | Structurally-ordered domains are depicted from the atomic structures and disordered regions are shown schematically. Nucleocapsid is in magenta and purple, and short RNA strands are in yellow. | COVID | | 476 | 23,051 | 481 | | 952 | 86,992 | 964 | Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Molecular view of glutamatergic synapse | Active | Illustration | Two large peach spheres surrounded by blobs of many colors. | This illustration highlights spherical pre-synaptic vesicles that carry the neurotransmitter glutamate. The presynaptic and postsynaptic membranes are shown with proteins relevant for transmitting and modulating the neuronal signal. <Br><Br> PDB 101’s <a href=" https://pdb101.rcsb.org/learn/videos/opioids-and-pain-signaling">Opioids and Pain Signaling video</a> explains how glutamatergic synapses are involved in the process of pain signaling. | | | 3,079 | 17,365,508 | 3,241 | | | | | 769 | 116,588 | 810 | | 1,539 | 528,376 | 1,620 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | RNA polymerase | Active | Illustration | A large purple orb with orange and green lines crossing it’s middle. | RNA polymerase (purple) is a complex enzyme at the heart of transcription. During this process, the enzyme unwinds the DNA double helix and uses one strand (darker orange) as a template to create the single-stranded messenger RNA (green), later used by ribosomes for protein synthesis. <Br><Br> From the <a href=" https://www.rcsb.org/structure/1i6h">RNA polymerase II elongation complex of <em>Saccharomyces cerevisiae</em></a> (PDB entry 1I6H) as seen in PDB-101's <a href=" https://pdb101.rcsb.org/learn/videos/what-is-a-protein-video">What is a Protein?</a> video. | | Maria Voigt and the RCSB Protein Data Bank. | 2,154 | 4,269,820 | 1,950 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | | | | 538 | 22,773 | 487 | | 1,077 | 95,590 | 975 | Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Respiratory droplet | Active | Illustration | A large orb filled with green strings and small orange dots. Entangled in the green strings is a pink orb with darker pink projections. | This painting shows a cross section of a small respiratory droplet, like the ones that are thought to transmit SARS-CoV-2, the virus that causes COVID-19. The virus is shown in pink, and the droplet is also filled with molecules that are present in the respiratory tract, including mucins (green), pulmonary surfactant proteins and lipids (blue), and antibodies (tan). | | | 4,386 | 24,667,244 | 3,336 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | | | | 1,096 | 148,641 | 833 | | 2,193 | 641,755 | 1,668 | Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Measles virus | Active | Illustration | A large blue sphere with a double-layered barrier and green lines snaking through the middle. | A cross section of the measles virus in which six proteins work together to infect cells. The measles virus is extremely infectious; 9 out of 10 people exposed will contract the disease. Fortunately, an effective vaccine protects against infection. <Br><Br> For a zoomed-in look at the six important proteins, see <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6996">Measles Virus Proteins</a>. | | | 2,840 | 14,010,848 | 2,400 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | | | | 710 | 76,015 | 600 | | 1,420 | 348,592 | 1,200 | Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Measles virus proteins | Active | Illustration | A large blue sphere with a double-layered barrier and green lines snaking through the middle. Six proteins are enlarged on the side, as purple, pink, blue, and green blobs. | | | | 2,796 | 9,601,324 | 3,105 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | | | | 698 | 92,085 | 776 | | 1,397 | 434,892 | 1,552 | Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Shiga toxin | Active | Illustration | A dark red orb with bright red projections off the bottom. One is attached to a green blob, and other green and orange blobs are floating around it. Green cylinders are in the bottom. | <em>E. coli</em> bacteria normally live harmlessly in our intestines, but some cause disease by making toxins. One of these toxins, called Shiga toxin (green), inactivates host ribosomes (purple) by mimicking their normal binding partners, the EF-Tu elongation factor (red) complexed with Phe-tRNAPhe (orange). <Br><Br> Find these in the RCSB Protein Data Bank: <a href=" https://www.rcsb.org/structure/7U6V">Shiga toxin 2</a> (PDB entry 7U6V) and <a href=" https://www.rcsb.org/structure/1TTT">Phe-tRNA</a> (PDB entry 1TTT). <Br><Br> More information about this work can be found in the <em>J. Biol. Chem.</em> paper <a href=" https://www.jbc.org/article/S0021-9258(22)01238-8/fulltext">"Cryo-EM structure of Shiga toxin 2 in complex with the native ribosomal P-stalk reveals residues involved in the binding interaction"</a> by Kulczyk et. al. | | | 2,075 | 3,638,632 | 1,700 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | Title: Shiga toxin 2 in complex with ribosomal P-stalk. Some of bacterial ribosome-inactivating toxins evolved to mimic the mechanism employed for loading onto the ribosome by translation factors. The illustration depicts how Shiga toxin 2a (Stx2a) holotoxin (green, PDB ID: 7U6V, EMD-26381) outcompetes the EF-Tu elongation factor (red, PDB ID: 1TTT) complexed with Phe-tRNAPhe (orange) for binding to the ribosomal P-stalk (red) at the large subunit of the 80S ribosome (purple, EMD-26380). Kulczyk et al. determined a cryo-EM structure of Stx2a bound to the native ribosomal P-stalk. Sourced some info from the CDC site: https://www.cdc.gov/ecoli/general/index.html | Escherichia coli | | 518 | 24,290 | 425 | | 1,037 | 102,929 | 850 | Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Zika virus | Active | Illustration | Two large pink orbs in a see of small, yellow blobs. One pink orb is cut in half to reveal the inside filled with yellow strings. It’s touching a green barrier that has small, blue blobs on the other side. | Zika virus is shown in cross section at center left. On the outside, it includes envelope protein (red) and membrane protein (magenta) embedded in a lipid membrane (light purple). Inside, the RNA genome (yellow) is associated with capsid proteins (orange). The viruses are shown interacting with receptors on the cell surface (green) and are surrounded by blood plasma molecules at the top. | | | 3,193 | 13,501,724 | 2,487 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | | | | 798 | 101,517 | 621 | | 1,596 | 398,353 | 1,243 | Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | HIV enzyme | Active | Illustration | Three pictures of large protein blobs with helices winding through them. | These images model the molecular structures of three enzymes with critical roles in the life cycle of the human immunodeficiency virus (HIV). At the top, reverse transcriptase (orange) creates a DNA copy (yellow) of the virus's RNA genome (blue). In the middle image, integrase (magenta) inserts this DNA copy in the DNA genome (green) of the infected cell. At the bottom, much later in the viral life cycle, protease (turquoise) chops up a chain of HIV structural protein (purple) to generate the building blocks for making new viruses. See these enzymes in action on PDB 101’s video <a href=" https://pdb101.rcsb.org/learn/videos/a-molecular-view-of-hiv-therapy"> A Molecular View of HIV Therapy</a>. | | | 3,556 | 7,609,192 | 2,000 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | | | | 889 | 59,564 | 500 | | 1,778 | 231,370 | 1,000 | Genes, Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Plastic-eating enzymes | Active | Illustration | A diagram showing the steps of plastic degradation. A long change of PET plastic polymer is converted into the smaller molecule MHET which is further broken down into two small molecules, EG and TPA. A purple blob labeled PETase and a larger blob labeled MHETase both have a yellow spot in them. | PETase enzyme degrades polyester plastic (polyethylene terephthalate, or PET) into monohydroxyethyl terephthalate (MHET). Then, MHETase enzyme degrades MHET into its constituents ethylene glycol (EG) and terephthalic acid (TPA). <Br><Br> Find these in the RCSB Protein Data Bank: <a href=" https://www.rcsb.org/structure/5XH3"> PET hydrolase</a> (PDB entry 5XH3) and <a href=" https://www.rcsb.org/structure/6QGA">MHETase</a> (PDB entry 6QGA). | | | 1,264 | 5,647,220 | 1,479 | : From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | | | | 316 | 22,146 | 369 | | 632 | 90,672 | 739 | Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Histone deacetylases | Active | Illustration | A flower-shaped complex. Yellow helices (DNA) wrap around an orange core (histones). Blue and green enzymes sit below them. | The human genome contains much of the information needed for every cell in the body to function. However, different types of cells often need different types of information. Access to DNA is controlled, in part, by how tightly it’s wrapped around proteins called histones to form nucleosomes. The complex shown here, from yeast cells (PDB entry <a href=" https://www.rcsb.org/structure/6Z6P">6Z6P</a>), includes several histone deacetylase (HDAC) enzymes (green and blue) bound to a nucleosome (histone proteins in red; DNA in yellow). The yeast HDAC enzymes are similar to the human enzymes. Two enzymes form a V-shaped clamp (green) that holds the other others, a dimer of the Hda1 enzymes (blue). In this assembly, Hda1 is activated and positioned to remove acetyl groups from histone tails. | | Jessica Damanski, Paloma Munguía Salazar, Mihika Shah, Rajiv Snape, David S. Goodsell, Stephen K. Burley, and the <a href=" https://pdb101.rcsb.org/motm/285">RCSB Protein Data Bank</a>. | 2,480 | 14,677,488 | 1,968 | : From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | Yeast Histone Deacetylases (HDAC) complex (green and blue) bound to a nucleosome (histone proteins in red; DNA in yellow). The complex shown here, from yeast cells (PDB entry 6Z6P), includes several Hda enzymes similar to human HDAC enzymes. Hda2 and Hda3 are non-catalytic and form a V-shaped clamp that holds a Hda1-Hda1’ dimer. In this assembly, Hda1 is activated and positioned to remove acetyl groups from histone tails. | | | 620 | 40,396 | 492 | | 1,240 | 179,730 | 984 | Genes, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Plant resistosome | Active | Illustration | A disc with five bent arms coming off the center. The center is a yellow star with green surrounding it, and the bent arms are blue. The bottom image shows the side view, with the yellow core hanging below the rest. | The research organism <em>Arabidopsis thaliana</em> forms a large molecular machine called a resistosome to fight off infections. This illustration shows the top and side views of the fully-formed resistosome assembly (PDB entry <a href=" https://www.rcsb.org/structure/6J5T">6J5T</a>), composed of different proteins including one the plant uses as a decoy, PBL2 (dark blue), that gets uridylylated to begin the process of building the resistosome (uridylyl groups in magenta). Other proteins include RSK1 (turquoise) and ZAR1 (green) subunits. The ends of the ZAR1 subunits (yellow) form a funnel-like protrusion on one side of the assembly (seen in the side view). The funnel can carry out the critical protective function of the resistosome by inserting itself into the cell membrane to form a pore, which leads to a localized programmed cell death. The death of the infected cell helps protect the rest of the plant. | | | 4,452 | 38,608,620 | 2,888 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | Top and side views of the fully-formed ZAR1 resistosome assembly (PDB entry 6J5T), composed of uridylylated PBL2 (dark blue; uridylyl groups in magenta), RSK1 (turquoise), and ZAR1 (green) subunits. The ends of the ZAR1 subunits (yellow) form a funnel-like protrusion on one side of the assembly. | | | 1,113 | 137,376 | 722 | | 2,226 | 607,004 | 1,444 | Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Catalase diversity | Active | Illustration | Three different colored blobs. Left is pink, yellow and purple and square shaped. Center is pink, yellow, and purple and oval shaped. Right is pink and yellow with green dots and circular. | Catalases are some of the most efficient enzymes found in cells. Each catalase molecule can decompose millions of hydrogen peroxide molecules every second—working as an antioxidant to protect cells from the dangerous form of reactive oxygen. Different cells build different types of catalases. The human catalase that protects our red blood cells, shown on the left from PDB entry <a href=" https://www.rcsb.org/structure/1QQW">1QQW</a>, is composed of four identical subunits and uses a heme/iron group to perform the reaction. Many bacteria scavenge hydrogen peroxide with a larger catalase, shown in the center from PDB entry <a href=" https://www.rcsb.org/structure/1IPH">1IPH</a>, that uses a similar arrangement of iron and heme. Other bacteria protect themselves with an entirely different catalase that uses manganese ions instead of heme, as shown at the right from PDB entry <a href=" https://www.rcsb.org/structure/1JKU">1JKU</a>. | | | 1,064 | 7,156,536 | 2,236 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | | | | 266 | 32,251 | 559 | | 532 | 159,659 | 1,118 | Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Protein kinases as cancer chemotherapy targets | Active | Illustration | Three pictures of a large, multicolored blob. In the Inactive Abl, an orange semicircle holds the blob closed. In the Active Abl form, the orange tail has released the protein into an open position. In the Dysregulated Bcr-Abl form, the orange semicircle tail is replaced with a large orange circle labeled BCR that cannot hold the protein in the inactive form. | Protein kinases—enzymes that add phosphate groups to molecules—are cancer chemotherapy targets because they play significant roles in almost all aspects of cell function, are tightly regulated, and contribute to the development of cancer and other diseases if any alterations to their regulation occur. Genetic abnormalities affecting the c-Abl tyrosine kinase are linked to chronic myelogenous leukemia, a cancer of immature cells in the bone marrow. In the noncancerous form of the protein, binding of a myristoyl group to the kinase domain inhibits the activity of the protein until it is needed (top left shows the inactive form, top right shows the open and active form). The cancerous variant of the protein, called Bcr-Abl, lacks this autoinhibitory myristoyl group and is continually active (bottom). ATP is shown in green bound in the active site of the kinase. <Br><Br> Find these in the RCSB Protein Data Bank: <a href=" https://www.rcsb.org/structure/1OPL">c-Abl tyrosine kinase and regulatory domains</a> (PDB entry 1OPL) and <a href=" https://www.rcsb.org/structure/1ZZP">F-actin binding domain</a> (PDB entry 1ZZP). | | | 1,988 | 14,410,232 | 2,410 | From: Amy Wu < amy.wu@rcsb.org> Sent: Thursday, February 1, 2024 4:20 PM To: Bigler, Abbey (NIH/NIGMS) [C] < abbey.bigler@nih.gov>; Crowley, Rachel (NIH/NIGMS) [E] < rachel.crowley@nih.gov> Cc: Christine Zardecki < zardecki@rcsb.rutgers.edu> Subject: [EXTERNAL] RCSB PDB Content for the NIGMS Image and Video Gallery Hi! I hope all is well. Attached is a Google Folder link + Word document with all the requested images and information. Link: https://drive.google.com/drive/folders/17GbO9ddzOn0UAifMihHDo6qAQdIQgE4r?usp=drive_link Please feel free to email me with any questions. Sincerely, Amy Funding Source: RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198. | In the normal protein, binding of the myristoyl group to the kinase domain inhibits the activity of the protein until it is needed. Bcr-Abl lacks this autoinhibitory myristoyl group and is continually active. ATP is shown in green bound in the active site of the kinase. | CML | | 496 | 38,691 | 602 | | 994 | 151,656 | 1,205 | Injury and Illness, Molecular Structures | | | | Amy Wu and Christine Zardecki, RCSB Protein Data Bank. | | | Hungry, hungry macrophages | Active | Photograph | | Macrophages (green) are the professional eaters of our immune system. They are constantly surveilling our tissues for targets—such as bacteria, dead cells, or even cancer—and clearing them before they can cause harm. In this image, researchers were testing how macrophages responded to different molecules that were attached to silica beads (magenta) coated with a lipid bilayer to mimic a cell membrane. <Br><Br>Find more information on this image in the <em>NIH Director’s Blog</em> post <a href=" https://directorsblog.nih.gov/2023/08/22/how-to-feed-a-macrophage/">"How to Feed a Macrophage."</a> | | Annalise Bond, Morrissey Lab, University of California, Santa Barbara. | 3,900 | 1,176,565 | 3,900 | From: Meghan Morrissey morrissey@ucsb.edu Sent: Wednesday, August 23, 2023 3:22 PM To: Bigler, Abbey (NIH/NIGMS) [C] abbey.bigler@nih.gov; Annalise Bond annalise.bond@lifesci.ucsb.edu Subject: [EXTERNAL] Re: NIGMS Gallery Request <Br><Br> Sure! Here is the requested info, let us know if we should make any changes. I have cc'ed Annalise Bond who took the image. <Br><Br> Free of copyright restrictions - yes. <Br><Br> Funding: R35GM146935 | Macrophages (green) are the professional eaters of our immune system. They are constantly surveilling our tissues for targets – like bacteria, dead cells or even cancer! – and clearing them before they can cause harm. With these synthetic targets (magenta), we can test what makes a macrophage particularly hungry and what makes a target extra tasty. | white blood cells, purple | | 975 | 102,756 | 975 | | 1,950 | 358,041 | 1,950 | Cells, Injury and Illness | | | | Meghan Morrissey, University of California, Santa Barbara. | | | Adult and juvenile Hawaiian bobtail squids | Active | Photograph | | | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 2,902 | 5,967,374 | 4,354 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism | | 725 | 46,713 | 1,088 | | 1,451 | 198,193 | 2,177 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Hawaiian bobtail squid | Active | Photograph | | | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 2,223 | 4,908,239 | 3,334 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism | | 556 | 26,942 | 833 | | 1,111 | 116,932 | 1,667 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Adult Hawaiian bobtail squid burying in the sand | Active | Video | | | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | 867,887 | | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism, bacteria | | | | | | | | | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | An adult Hawaiian bobtail squid | Active | Photograph | | An adult female Hawaiian bobtail squid, <em>Euprymna scolopes</em>, with its mantle cavity exposed from the underside. Some internal organs are visible, including the two lobes of the light organ that contains bioluminescent bacteria, <em>Vibrio fischeri</em>. The light organ includes accessory tissues like an ink sac (black) that serves as a shutter, and a silvery reflector that directs the light out of the underside of the animal. | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 1,550 | 212,054 | 1,086 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism | | 388 | 8,483 | 271 | | 775 | 36,384 | 543 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Flagellated bacterial cells | Active | Photograph | | <em>Vibrio fischeri</em> (2 mm in length) is the exclusive symbiotic partner of the Hawaiian bobtail squid, <em>Euprymna scolopes</em>. After this bacterium uses its flagella to swim from the seawater into the light organ of a newly hatched juvenile, it colonizes the host and loses the appendages. This image was taken using a scanning electron microscope. | | Dennis Kunkel, University of Hawaii-Manoa. | 2,560 | 398,881 | 1,920 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism, bacteria, flagellum | | 640 | 36,362 | 480 | | 1,280 | 157,764 | 960 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Bacterial cells migrating through the tissues of the squid light organ | Active | Photograph | | <em>Vibrio fischeri</em> cells (~ 2 mm), labeled with green fluorescent protein (GFP), passing through a very narrow bottleneck in the tissues (red) of the Hawaiian bobtail squid, <em>Euprymna scolopes</em>, on the way to the crypts where the symbiont population resides. This image was taken using a confocal fluorescence microscope. | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 370 | 12,895,212 | 561 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism, bacteria | | 92 | 2,486 | 139 | | 184 | 8,144 | 280 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Pores on the surface of the Hawaiian bobtail squid light organ | Active | Photograph | | | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 1,221 | 6,515,760 | 1,771 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism, bacteria | | 305 | 18,077 | 442 | | 610 | 70,834 | 884 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | The nascent juvenile light organ of the Hawaiian bobtail squid | Active | Photograph | | | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 3,664 | 1,088,616 | 4,741 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism, bacteria | | 915 | 115,511 | 1,185 | | 1,831 | 544,341 | 2,370 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Bacterial cells aggregating above the light organ of the Hawaiian bobtail squid | Active | Photograph | | | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 2,008 | 322,938 | 1,888 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism, bacteria | | 502 | 18,992 | 472 | | 1,004 | 77,993 | 944 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Bacterial cells aggregated above a light-organ pore of the Hawaiian bobtail squid | Active | Photograph | | | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 860 | 326,877 | 903 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism, bacteria, Euprymna scolopes | | 215 | 9,257 | 225 | | 430 | 37,413 | 451 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Bacterial symbionts colonizing the crypts of a juvenile Hawaiian bobtail squid light organ | Active | Photograph | | | | The labs of Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | 496 | 1,150,972 | 500 | We, the creators/owners of these images and videos, grant permission to post them in the NIGMS image and video gallery. This material is free of copyright restrictions. -Margaret J. McFall-Ngai (Carnegie Institution/Caltech) and Edward G. Ruby (Caltech) All these images and videos were produced with the support of NIAID/NIH and NIGMS/NIH funding (R01GM135254).
| | symbiont, symbiotic, bioluminescent, research organism, bacteria | | 124 | 2,115 | 125 | | 248 | 7,697 | 250 | Tools and Techniques | | | | Margaret J. McFall-Ngai, Carnegie Institution for Science/California Institute of Technology, and Edward G. Ruby, California Institute of Technology. | | | Single-cell “radios” | Active | Photograph | | Individual cells are color-coded based on their identity and signaling activity using a protein circuit technology developed by the Coyle Lab. Just as a radio allows you to listen to an individual frequency, this technology allows researchers to tune into the specific “radio station” of each cell through genetically encoded proteins from a bacterial system called MinDE. The proteins generate an oscillating fluorescent signal that transmits information about cell shape, state, and identity that can be decoded using digital signal processing tools originally designed for telecommunications. The approach allows researchers to look at the dynamics of a single cell in the presence of many other cells. <Br><Br> Related to video <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=7022">7022</a>. | | Rohith Rajasekaran, Scott Coyle’s lab, University of Wisconsin-Madison. | 1,608 | 7,757,158 | 1,608 | I give permission for inclusion of the attached images and videos as part of the NIGMS Image and Video Gallery. I confirm these are free from copyright restrictions. These images and videos are associated with an NIH New Innovator Award to Scott Coyle 1DP2GM154329-01. Additional support for this work came from a David and Lucille Packard Foundation award. All of these images and videos were collected by Rohith Rajasekaran, a graduate student in the IPiB program at University of Wisconsin-Madison in the Coyle Lab. | Individual cells and their signaling dynamics can be tracked using a novel circuit technology developed by the Coyle Lab. Briefly, a synthetic protein wave derived from the bacterial positioning system MinDE is installed in human cells to generate a unique oscillating fluorescent signal. This oscillation acts like a single-cell radio beacon whose signal encodes cell shape, state and identity data that can be decoded using digital signal processing tools originally designed for telecommunications. The approach allows single-cell dynamics to be reliably tracked and analyzed in multicellular contexts and is currently being used to probe the origins of oncogenic behaviors in cancer. | | | 402 | 26,666 | 402 | | 804 | 104,838 | 804 | Cells, Tools and Techniques | | | | Scott Coyle, University of Wisconsin-Madison. | | | Single-cell “radios” | Active | Video | | Individual cells are color-coded based on their identity and signaling activity using a protein circuit technology developed by the Coyle Lab. Just as a radio allows you to listen to an individual frequency, this technology allows researchers to tune into the specific “radio station” of each cell through genetically encoded proteins from a bacterial system called MinDE. The proteins generate an oscillating fluorescent signal that transmits information about cell shape, state, and identity that can be decoded using digital signal processing tools originally designed for telecommunications. The approach allows researchers to look at the dynamics of a single cell in the presence of many other cells. <Br><Br> Related to image <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=7021">7021</a>. | | Rohith Rajasekaran, Scott Coyle’s lab, University of Wisconsin-Madison. | | 21,576,741 | | I give permission for inclusion of the attached images and videos as part of the NIGMS Image and Video Gallery. I confirm these are free from copyright restrictions. These images and videos are associated with an NIH New Innovator Award to Scott Coyle 1DP2GM154329-01. Additional support for this work came from a David and Lucille Packard Foundation award. All of these images and videos were collected by Rohith Rajasekaran, a graduate student in the IPiB program at University of Wisconsin-Madison in the Coyle Lab. | Barcoding single-cell identity and cellular state in the frequency domain using synthetic protein oscillations as "single cell radios" Individual cells and their signaling dynamics can be tracked using a novel circuit technology developed by the Coyle Lab. Briefly, a synthetic protein wave derived from the bacterial positioning system MinDE is installed in human cells to generate a unique oscillating fluorescent signal. This oscillation acts like a single-cell radio beacon whose signal encodes cell shape, state and identity data that can be decoded using digital signal processing tools originally designed for telecommunications. The approach allows single-cell dynamics to be reliably tracked and analyzed in multicellular contexts and is currently being used to probe the origins of oncogenic behaviors in cancer.
| | | | | | | | | | Cells, Tools and Techniques | | | | Scott Coyle, University of Wisconsin-Madison. | | | Dynein moving along microtubules | Active | Video | | Dynein (green) is a motor protein that “walks” along microtubules (red, part of the cytoskeleton) and carries its cargo along with it. This video was captured through fluorescence microscopy. | | John Gillies, Morgan DeSantis' lab, University of Michigan. | | 18,829,417 | | Hi Rachel, Yes, you have my permission to include the video in the NIGMS gallery. The image is free from copyright restrictions. It was acquired in my lab here at the University of Michigan by John Gillies, PhD. Thanks! Morgan Funding information: R35GM146739
| | | | | | | | | | | Cells, Chemistry, Biochemistry, and Pharmacology, Molecular Structures | | | Used in the 5/22/24 BioBeat featuring Dr. DeSantis. | Morgan DeSantis, University of Michigan. | | | CRISPR Illustration | Active | Illustration | | This illustration shows, in simplified terms, how the CRISPR-Cas9 system can be used as a gene-editing tool. <Br><Br>Frame 1 shows the two components of the CRISPR system: a strong cutting device (an enzyme called Cas9 that can cut through a double strand of DNA), and a finely tuned targeting device (a small strand of RNA programmed to look for a specific DNA sequence). <Br><Br>In frame 2, the CRISPR machine locates the target DNA sequence once inserted into a cell. <Br><Br>In frame 3, the Cas9 enzyme cuts both strands of the DNA. <Br><Br>Frame 4 shows a repaired DNA strand with new genetic material that researchers can introduce, which the cell automatically incorporates into the gap when it repairs the broken DNA. <Br><Br>For an explanation and overview of the CRISPR-Cas9 system, see the <a href=" http://www.ibiology.org/ibiomagazine/jennifer-doudna-genome-engineering-with-crispr-cas9-birth-of-a-breakthrough-technology.html">iBiology video</a>. <Br><Br>Download the individual frames: <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6465">Frame 1</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6486">Frame 2</a>, <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6487">Frame 3</a>, and <a href=" https://images.nigms.nih.gov/pages/DetailPage.aspx?imageid2=6488">Frame 4</a>. | | National Institute of General Medical Sciences. | 1,080 | 698,411 | 1,080 | | | | | 270 | 11,578 | 270 | | 540 | 41,511 | 540 | Genes, Tools and Techniques | | | | National Institute of General Medical Sciences. |
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